File	CN State	Type	Chromosome	Cytoband Start	Size (kbp)	Marker Count	Gene Count	Genes	OMIM ® Genes Count	OMIM ® Genes	CytoRegions	Call	Segment Interpretation	Curation By	Materially Modified Segment	Microarray Nomenclature	Full Location
LST.OSCHP	9.33	Gain	17	q12	451.562	31	10	CCT6B, ZNF830, LIG3, RFFL, RAD51L3-RFFL, RAD51D, FNDC8, NLE1, UNC45B, SLC35G3	5	CCT6B (610730), LIG3 (600940), RFFL (609735), RAD51D (602954), UNC45B (611220)	CytoRegions Not Set				false	arr[hg19] 17q12(33,112,847-33,564,409)x9-10	chr17:33112847-33564409
LST.OSCHP	9.33	Gain	8	p11.23	3754.868	301	40	LINC01605, ZNF703, LOC101929622, LOC102723701, ERLIN2, LOC728024, PLPBP, ADGRA2, BRF2, RAB11FIP1, GOT1L1, ADRB3, EIF4EBP1, ASH2L, STAR, LSM1, BAG4, DDHD2, PLPP5, NSD3, LETM2, FGFR1, C8orf86, RNF5P1, TACC1, PLEKHA2, HTRA4, TM2D2, ADAM9, SNORD38D, ADAM32, ADAM5, ADAM3A, LOC100130964, ADAM18, ADAM2, IDO1, IDO2, TCIM, ZMAT4	25	ZNF703 (617045), ERLIN2 (611605), PLPBP (604436), ADGRA2 (606823), BRF2 (607013), RAB11FIP1 (608737), ADRB3 (109691), EIF4EBP1 (602223), ASH2L (604782), STAR (600617), LSM1 (607281), BAG4 (603884), DDHD2 (615003), PLPP5 (610626), NSD3 (607083), FGFR1 (136350), TACC1 (605301), PLEKHA2 (607773), HTRA4 (610700), TM2D2 (610081), ADAM9 (602713), ADAM2 (601533), IDO1 (147435), IDO2 (612129), TCIM (607702)	CytoRegions Not Set				false	arr[hg19] 8p11.23p11.21(37,353,780-41,108,648)x9-10	chr8:37353780-41108648
LST.OSCHP	9.0	Gain	8	p12	1339.533	90	3	KCNU1, MIR1268A, LINC01605	1	KCNU1 (615215)	CytoRegions Not Set				false	arr[hg19] 8p12p11.23(35,999,590-37,339,123)x9	chr8:35999590-37339123
LST.OSCHP	6.67	Gain	8	p11.21	1747.853	178	28	SFRP1, MIR548AO, SNORD65B, GOLGA7, GINS4, LOC102723729, GPAT4, NKX6-3, ANK1, MIR486-1, MIR486-2, KAT6A, LOC105379393, AP3M2, PLAT, LOC101929897, IKBKB, POLB, DKK4, VDAC3, SLC20A2, SMIM19, CHRNB3, CHRNA6, THAP1, RNF170, MIR4469, HOOK3	19	SFRP1 (604156), GOLGA7 (609453), GINS4 (610611), GPAT4 (608143), NKX6-3 (610772), ANK1 (612641), KAT6A (601408), AP3M2 (610469), PLAT (173370), IKBKB (603258), POLB (174760), DKK4 (605417), VDAC3 (610029), SLC20A2 (158378), CHRNB3 (118508), CHRNA6 (606888), THAP1 (609520), RNF170 (614649), HOOK3 (607825)	CytoRegions Not Set				false	arr[hg19] 8p11.21(41,121,279-42,869,132)x6-7	chr8:41121279-42869132
LST.OSCHP	6.33	Gain	8	p11.21	4466.772	94	5	HOOK3, FNTA, POMK, HGSNAT, POTEA	5	HOOK3 (607825), FNTA (134635), POMK (615247), HGSNAT (610453), POTEA (608915)	CytoRegions Not Set				false	arr[hg19] 8p11.21q11.1(42,870,374-47,337,146)x6-7	chr8:42870374-47337146
LST.OSCHP	6.0	Gain	8	q24.23	6528.339	509	138	COL22A1, KCNK9, TRAPPC9, PEG13, CHRAC1, AGO2, PTK2, DENND3, SLC45A4, LOC105375787, LINC01300, GPR20, PTP4A3, MROH5, MIR1302-7, MIR4539, MIR4472-1, LINC00051, TSNARE1, ADGRB1, ARC, LOC101928087, JRK, PSCA, LY6K, LOC100288181, THEM6, SLURP1, LYPD2, SLURP2, LYNX1-SLURP2, LYNX1, LY6D, GML, CYP11B1, CYP11B2, LY6E-DT, CDC42P3, LY6E, C8orf31, LY6H, GPIHBP1, ZFP41, GLI4, MINCR, ZNF696, TOP1MT, RHPN1-AS1, RHPN1, MAFA-AS1, MAFA, ZC3H3, SNORD149, GSDMD, LOC100310756, MROH6, NAPRT, EEF1D, TIGD5, PYCR3, TSTA3, ZNF623, ZNF707, BREA2, CCDC166, LOC101928160, MAPK15, FAM83H, MIR4664, FAM83H-AS1, LOC105375800, SCRIB, MIR937, PUF60, NRBP2, MIR6845, EPPK1, PLEC, MIR661, PARP10, GRINA, SPATC1, OPLAH, MIR6846, EXOSC4, MIR6847, GPAA1, CYC1, SHARPIN, MAF1, WDR97, HGH1, MROH1, MIR7112, SCX, BOP1, HSF1, DGAT1, MIR6848, SCRT1, TMEM249, FBXL6, SLC52A2, LOC101928902, ADCK5, CPSF1, MIR939, MIR6849, SLC39A4, VPS28, TONSL, TONSL-AS1, MIR6893, CYHR1, KIFC2, FOXH1, PPP1R16A, GPT, MFSD3, RECQL4, LRRC14, LRRC24, C8orf82, ARHGAP39, ZNF251, ZNF34, RPL8, MIR6850, ZNF517, LOC100130027, ZNF7, COMMD5, ZNF250, ZNF16, ZNF252P, TMED10P1, ZNF252P-AS1, C8orf33	71	COL22A1 (610026), KCNK9 (605874), TRAPPC9 (611966), CHRAC1 (607268), AGO2 (606229), PTK2 (600758), DENND3 (617503), GPR20 (601908), PTP4A3 (606449), ADGRB1 (602682), ARC (612461), JRK (603210), PSCA (602470), LY6K (615093), SLURP1 (606119), LYNX1 (606110), LY6D (606204), GML (602370), CYP11B1 (610613), CYP11B2 (124080), LY6E (601384), LY6H (603625), GPIHBP1 (612757), GLI4 (165280), TOP1MT (606387), RHPN1 (601031), MAFA (610303), GSDMD (617042), NAPRT (611552), EEF1D (130592), PYCR3 (616408), TSTA3 (137020), FAM83H (611927), SCRIB (607733), PUF60 (604819), NRBP2 (615563), EPPK1 (607553), PLEC (601282), MIR661 (613716), PARP10 (609564), GRINA (138251), SPATC1 (610874), OPLAH (614243), EXOSC4 (606491), GPAA1 (603048), CYC1 (123980), SHARPIN (611885), MAF1 (610210), SCX (609067), BOP1 (610596), HSF1 (140580), DGAT1 (604900), SCRT1 (605858), FBXL6 (609076), SLC52A2 (607882), CPSF1 (606027), SLC39A4 (607059), VPS28 (611952), TONSL (604546), CYHR1 (616635), KIFC2 (615216), FOXH1 (603621), PPP1R16A (609172), GPT (138200), RECQL4 (603780), ARHGAP39 (615880), ZNF34 (194526), RPL8 (604177), ZNF7 (194531), COMMD5 (608216), ZNF16 (601262)	CytoRegions Not Set				false	arr[hg19] 8q24.23q24.3(139,764,395-146,292,734)x6	chr8:139764395-146292734
LST.OSCHP	5.33	Gain	8	q24.21	10965.438	805	50	PVT1, MIR1204, TMEM75, MIR1205, MIR1206, MIR1207, MIR1208, LINC00824, LINC00976, LINC00977, CCDC26, MIR3686, GSDMC, FAM49B, MIR5194, ASAP1, ASAP1-IT2, ASAP1-IT1, ADCY8, EFR3A, OC90, HHLA1, KCNQ3, HPYR1, LRRC6, TMEM71, PHF20L1, TG, SLA, MIR7848, PTCSC1, WISP1, NDRG1, ST3GAL1, LOC105375773, LOC101927798, LOC101927822, ZFAT, ZFAT-AS1, MIR30B, MIR30D, NCRNA00250, LOC101927845, LINC01591, KHDRBS3, LINC02055, LOC101927915, LOC401478, FAM135B, COL22A1	20	PVT1 (165140), CCDC26 (613040), GSDMC (608384), FAM49B (617978), ASAP1 (605953), ADCY8 (103070), EFR3A (611798), OC90 (601658), HHLA1 (604109), KCNQ3 (602232), LRRC6 (614930), TG (188450), SLA (601099), PTCSC1 (617440), WISP1 (603398), NDRG1 (605262), ST3GAL1 (607187), ZFAT (610931), KHDRBS3 (610421), COL22A1 (610026)	CytoRegions Not Set				false	arr[hg19] 8q24.21q24.23(128,775,143-139,740,581)x5-6	chr8:128775143-139740581
LST.OSCHP	5.33	Gain	8	q21.2	9722.851	668	49	RALYL, LRRCC1, LOC102723322, E2F5, C8orf59, CA13, CA1, CA3, CA3-AS1, CA2, REXO1L2P, PSKH2, ATP6V0D2, SLC7A13, WWP1, RMDN1, CPNE3, CNGB3, CNBD1, DCAF4L2, MMP16, LOC101929709, RIPK2, OSGIN2, NBN, DECR1, CALB1, LINC00534, LINC01030, TMEM64, NECAB1, C8orf88, PIP4P2, OTUD6B-AS1, OTUD6B, LRRC69, MIR4661, SLC26A7, RUNX1T1, LOC102724710, FLJ46284, TRIQK, MIR8084, C8orf87, LINC00535, FAM92A, RBM12B, RBM12B-AS1, TMEM67	24	RALYL (614648), LRRCC1 (617791), E2F5 (600967), CA13 (611436), CA1 (114800), CA3 (114750), CA2 (611492), SLC7A13 (617256), WWP1 (602307), RMDN1 (611871), CPNE3 (604207), CNGB3 (605080), MMP16 (602262), RIPK2 (603455), OSGIN2 (604598), NBN (602667), DECR1 (222745), CALB1 (114050), PIP4P2 (609864), OTUD6B (612021), SLC26A7 (608479), RUNX1T1 (133435), FAM92A (617273), TMEM67 (609884)	CytoRegions Not Set				false	arr[hg19] 8q21.2q22.1(85,133,801-94,856,652)x5-6	chr8:85133801-94856652
LST.OSCHP	5.33	Gain	8	q21.13	2403.441	162	21	STMN2, HEY1, LINC01607, LOC101927040, MRPS28, TPD52, MIR5708, ZBTB10, ZNF704, PAG1, FABP5, PMP2, FABP9, FABP4, FABP12, IMPA1P1, IMPA1, SLC10A5, ZFAND1, CHMP4C, SNX16	11	STMN2 (600621), HEY1 (602953), MRPS28 (611990), TPD52 (604068), PAG1 (605767), FABP5 (605168), PMP2 (170715), FABP4 (600434), IMPA1 (602064), CHMP4C (610899), SNX16 (614903)	CytoRegions Not Set				false	arr[hg19] 8q21.13(80,398,162-82,801,603)x5-6	chr8:80398162-82801603
LST.OSCHP	5.33	Gain	8	q23.3	14008.664	1203	85	TRPS1, LINC00536, EIF3H, LOC105375713, UTP23, RAD21, RAD21-AS1, MIR3610, AARD, SLC30A8, MED30, EXT1, SNORD168, SAMD12, SAMD12-AS1, TNFRSF11B, COLEC10, LOC101927513, MAL2, MAL2-AS1, MIR548AZ, NOV, ENPP2, TAF2, DSCC1, DEPTOR, COL14A1, MRPL13, MTBP, SNTB1, LOC101927543, HAS2, HAS2-AS1, SMILR, LINC01151, ZHX2, DERL1, TBC1D31, FAM83A, FAM83A-AS1, MIR4663, C8orf76, ZHX1-C8orf76, ZHX1, ATAD2, MIR548D1, WDYHV1, FBXO32, KLHL38, ANXA13, FAM91A1, FER1L6, FER1L6-AS1, FER1L6-AS2, LOC101927588, TMEM65, TRMT12, RNF139-AS1, RNF139, TATDN1, MIR6844, NDUFB9, MTSS1, MIR4662B, MIR4662A, LINC00964, ZNF572, LOC105375744, SQLE, WASHC5, NSMCE2, TRIB1, LINC00861, LOC101927657, FAM84B, PCAT1, PCAT2, PRNCR1, CASC19, CCAT1, CASC21, CASC8, CCAT2, POU5F1B, CASC11	45	TRPS1 (604386), EIF3H (603912), RAD21 (606462), SLC30A8 (611145), MED30 (610237), EXT1 (608177), TNFRSF11B (602643), COLEC10 (607620), MAL2 (609684), NOV (164958), ENPP2 (601060), TAF2 (604912), DSCC1 (613203), DEPTOR (612974), COL14A1 (120324), MRPL13 (610200), MTBP (605927), SNTB1 (600026), HAS2 (601636), HAS2-AS1 (614353), ZHX2 (609185), DERL1 (608813), ZHX1 (604764), ATAD2 (611941), FBXO32 (606604), ANXA13 (602573), TMEM65 (616609), TRMT12 (611244), RNF139 (603046), NDUFB9 (601445), MTSS1 (608486), SQLE (602019), WASHC5 (610657), NSMCE2 (617246), TRIB1 (609461), FAM84B (609483), PCAT1 (616043), PCAT2 (617678), PRNCR1 (615452), CASC19 (617703), CCAT1 (617705), CASC21 (617702), CASC8 (617701), POU5F1B (615739), CASC11 (617704)	CytoRegions Not Set				false	arr[hg19] 8q23.3q24.21(114,732,647-128,741,311)x5-6	chr8:114732647-128741311
LST.OSCHP	5.0	Gain	8	q24.21	33.228	49	2	CASC11, MYC	2	CASC11 (617704), MYC (190080)	CytoRegions Not Set				false	arr[hg19] 8q24.21(128,741,421-128,774,649)x5	chr8:128741421-128774649
LST.OSCHP	5.0	Gain	14	q21.2	2128.828	145	14	FSCB, LOC105370473, LINC02302, C14orf28, LOC101927418, KLHL28, TOGARAM1, PRPF39, SNORD127, FKBP3, FANCM, MIS18BP1, LINC02303, LINC00871	5	FSCB (611779), TOGARAM1 (617618), PRPF39 (614907), FKBP3 (186947), FANCM (609644)	CytoRegions Not Set				false	arr[hg19] 14q21.2(44,822,127-46,950,955)x5	chr14:44822127-46950955
LST.OSCHP	5.0	Gain	8	q22.1	19856.587	1999	114	MIR378D2, PDP1, CDH17, GEM, RAD54B, FSBP, VIRMA, LOC100288748, ESRP1, DPY19L4, INTS8, CCNE2, NDUFAF6, TP53INP1, MIR3150BHG, MIR3150B, MIR3150A, PLEKHF2, LINC01298, C8orf37, C8orf37-AS1, LOC100500773, GDF6, UQCRB, MTERF3, PTDSS1, LOC102724804, SDC2, CPQ, LOC101927066, TSPYL5, SNORD3H, MTDH, LAPTM4B, MATN2, RPL30, SNORA72, ERICH5, RIDA, POP1, NIPAL2, KCNS2, STK3, OSR2, VPS13B, MIR599, MIR875, COX6C, RGS22, SNORD77B, FBXO43, POLR2K, SPAG1, RNF19A, MIR4471, ANKRD46, SNX31, PABPC1, MIR7705, YWHAZ, FLJ42969, ZNF706, NACA4P, GRHL2, NCALD, LOC104054148, MIR5680, RRM2B, UBR5-AS1, UBR5, ODF1, KLF10, GASAL1, AZIN1, AZIN1-AS1, ATP6V1C1, LINC01181, BAALC-AS2, BAALC, MIR3151, BAALC-AS1, LOC105369147, FZD6, SNORD173, CTHRC1, SLC25A32, DCAF13, LOC105375690, RIMS2, DCSTAMP, DPYS, LRP12, ZFPM2, ZFPM2-AS1, OXR1, ABRA, ANGPT1, RSPO2, EIF3E, EMC2, TMEM74, TRHR, NUDCD1, ENY2, PKHD1L1, EBAG9, SYBU, LOC100132813, KCNV1, LINC01608, LINC01609, LINC02237, CSMD3, MIR2053	69	PDP1 (605993), CDH17 (603017), GEM (600164), RAD54B (604289), FSBP (616306), VIRMA (616447), ESRP1 (612959), DPY19L4 (613895), INTS8 (611351), CCNE2 (603775), NDUFAF6 (612392), TP53INP1 (606185), PLEKHF2 (615208), C8orf37 (614477), GDF6 (601147), UQCRB (191330), MTERF3 (616930), PTDSS1 (612792), SDC2 (142460), TSPYL5 (614721), MTDH (610323), LAPTM4B (613296), MATN2 (602108), RPL30 (180467), RIDA (602487), POP1 (602486), KCNS2 (602906), STK3 (605030), OSR2 (611297), VPS13B (607817), COX6C (124090), RGS22 (615650), FBXO43 (609110), POLR2K (606033), SPAG1 (603395), RNF19A (607119), PABPC1 (604679), YWHAZ (601288), GRHL2 (608576), NCALD (606722), RRM2B (604712), UBR5 (608413), ODF1 (182878), KLF10 (601878), AZIN1 (607909), ATP6V1C1 (603097), BAALC (606602), FZD6 (603409), CTHRC1 (610635), SLC25A32 (610815), DCAF13 (616196), RIMS2 (606630), DCSTAMP (605933), DPYS (613326), ZFPM2 (603693), OXR1 (605609), ABRA (609747), ANGPT1 (601667), RSPO2 (610575), EIF3E (602210), EMC2 (607722), TMEM74 (613935), TRHR (188545), NUDCD1 (606109), PKHD1L1 (607843), EBAG9 (605772), SYBU (611568), KCNV1 (608164), CSMD3 (608399)	CytoRegions Not Set				false	arr[hg19] 8q22.1q23.3(94,868,477-114,725,064)x5	chr8:94868477-114725064
LST.OSCHP	4.67	Gain	14	q12	4753.629	414	35	AKAP6, NPAS3, SNORA89, EGLN3, SPTSSA, EAPP, SNX6, CFL2, BAZ1A, SRP54-AS1, IGBP1P1, SRP54, FAM177A1, LOC101927178, PPP2R3C, KIAA0391, PSMA6, NFKBIA, INSM2, RALGAPA1, RALGAPA1P1, SNORA101B, BRMS1L, LINC00609, PTCSC3, MBIP, SFTA3, NKX2-1, NKX2-1-AS1, NKX2-8, PAX9, SLC25A21, MIR4503, SLC25A21-AS1, MIPOL1	23	AKAP6 (604691), NPAS3 (609430), EGLN3 (606426), SPTSSA (613540), EAPP (609486), SNX6 (606098), CFL2 (601443), BAZ1A (605680), SRP54 (604857), PPP2R3C (615902), KIAA0391 (609947), PSMA6 (602855), NFKBIA (164008), INSM2 (614027), RALGAPA1 (608884), PTCSC3 (614821), MBIP (609431), SFTA3 (617860), NKX2-1 (600635), NKX2-8 (603245), PAX9 (167416), SLC25A21 (607571), MIPOL1 (606850)	CytoRegions Not Set				false	arr[hg19] 14q12q13.3(32,917,430-37,671,059)x4-5	chr14:32917430-37671059
LST.OSCHP	4.67	Gain	8	q21.13	2294.373	153	3	LOC101927141, LINC01419, RALYL	1	RALYL (614648)	CytoRegions Not Set				false	arr[hg19] 8q21.13q21.2(82,818,004-85,112,377)x4-5	chr8:82818004-85112377
LST.OSCHP	4.67	Gain	8	q21.12	1870.884	139	5	PKIA, PKIA-AS1, ZC2HC1A, LOC101241902, IL7	2	PKIA (606059), IL7 (146660)	CytoRegions Not Set				false	arr[hg19] 8q21.12q21.13(78,500,064-80,370,948)x4-5	chr8:78500064-80370948
LST.OSCHP	4.33	Gain	14	q12	1357.125	108	12	AP4S1, HECTD1, HEATR5A, LOC101927124, DTD2, GPR33, NUBPL, LINC02313, ARHGAP5-AS1, ARHGAP5, RNU6-2, AKAP6	5	AP4S1 (607243), GPR33 (610118), NUBPL (613621), ARHGAP5 (602680), AKAP6 (604691)	CytoRegions Not Set				false	arr[hg19] 14q12(31,552,619-32,909,744)x4-5	chr14:31552619-32909744
LST.OSCHP	4.33	Gain	8	q11.1	1681.399	180	8	ASNSP1, LINC00293, LOC100287846, SPIDR, CEBPD, PRKDC, MCM4, UBE2V2	6	LINC00293 (609543), SPIDR (615384), CEBPD (116898), PRKDC (600899), MCM4 (602638), UBE2V2 (603001)	CytoRegions Not Set				false	arr[hg19] 8q11.1q11.21(47,349,683-49,031,082)x4-5	chr8:47349683-49031082
LST.OSCHP	4.33	Gain	9	p21.1	855.801	57	21	B4GALT1, B4GALT1-AS1, SPINK4, BAG1, CHMP5, NFX1, AQP7, AQP3, NOL6, MIR6851, SUGT1P1, ANKRD18B, ANXA2P2, PTENP1, PTENP1-AS, LINC01251, PRSS3, UBE2R2, UBAP2, SNORD121B, SNORD121A	11	B4GALT1 (137060), SPINK4 (613929), BAG1 (601497), CHMP5 (610900), NFX1 (603255), AQP7 (602974), AQP3 (600170), NOL6 (611532), PTENP1 (613531), PRSS3 (613578), UBE2R2 (612506)	CytoRegions Not Set				false	arr[hg19] 9p21.1p13.3(33,117,523-33,973,324)x4-5	chr9:33117523-33973324
LST.OSCHP	4.33	Gain	17	p13.2	456.402	49	24	MINK1, CHRNE, C17orf107, GP1BA, SLC25A11, RNF167, PFN1, ENO3, SPAG7, CAMTA2, MIR6864, MIR6865, INCA1, KIF1C, LOC102724009, SLC52A1, ZFP3, ZNF232, LOC101928000, USP6, ZNF594, LOC100130950, SCIMP, RABEP1	17	MINK1 (609426), CHRNE (100725), GP1BA (606672), SLC25A11 (604165), RNF167 (610431), PFN1 (176610), ENO3 (131370), SPAG7 (610056), CAMTA2 (611508), INCA1 (617374), KIF1C (603060), SLC52A1 (607883), ZFP3 (194480), ZNF232 (616463), USP6 (604334), SCIMP (614406), RABEP1 (603616)	CytoRegions Not Set				false	arr[hg19] 17p13.2(4,766,936-5,223,338)x4-5	chr17:4766936-5223338
LST.OSCHP	4.33	Gain	14	q13.3	7111.553	451	18	MIPOL1, FOXA1, TTC6, LINC00517, SSTR1, CLEC14A, LINC00639, LOC105370457, SEC23A, SEC23A-AS1, GEMIN2, TRAPPC6B, PNN, MIA2, LOC100288846, FBXO33, LINC02315, LRFN5	11	MIPOL1 (606850), FOXA1 (602294), SSTR1 (182451), CLEC14A (616845), SEC23A (610511), GEMIN2 (602595), TRAPPC6B (610397), PNN (603154), MIA2 (602132), FBXO33 (609103), LRFN5 (612811)	CytoRegions Not Set				false	arr[hg19] 14q13.3q21.2(37,690,401-44,801,954)x4-5	chr14:37690401-44801954
LST.OSCHP	4.33	Gain	5	q11.1	2646.706	176	10	PARP8, LINC02106, LOC642366, ISL1, LINC02118, PELO, ITGA1, ITGA2, MOCS2, LOC257396	5	ISL1 (600366), PELO (605757), ITGA1 (192968), ITGA2 (192974), MOCS2 (603708)	CytoRegions Not Set				false	arr[hg19] 5q11.1q11.2(49,846,227-52,492,933)x4-5	chr5:49846227-52492933
LST.OSCHP	4.33	Gain	8	q11.23	7828.719	579	47	RGS20, TCEA1, LYPLA1, MRPL15, SOX17, RP1, XKR4, SBF1P1, LOC105375843, TMEM68, TGS1, LYN, SNORA1B, RPS20, SNORD54, CERNA3, MOS, PLAG1, CHCHD7, SDR16C5, SDR16C6P, PENK, LOC101929415, LINC00968, IMPAD1, LINC01606, LOC286177, LINC00588, LOC101929488, LOC286178, LINC01602, FAM110B, LOC101929528, UBXN2B, CYP7A1, SDCBP, NSMAF, TOX, LOC100505501, CA8, LINC01301, RAB2A, CHD7, LOC100130298, CLVS1, ASPH, MIR4470	26	RGS20 (607193), TCEA1 (601425), LYPLA1 (605599), MRPL15 (611828), SOX17 (610928), RP1 (603937), TGS1 (606461), LYN (165120), RPS20 (603682), MOS (190060), PLAG1 (603026), CHCHD7 (611238), SDR16C5 (608989), PENK (131330), IMPAD1 (614010), FAM110B (611394), UBXN2B (610686), CYP7A1 (118455), SDCBP (602217), NSMAF (603043), TOX (606863), CA8 (114815), RAB2A (179509), CHD7 (608892), CLVS1 (611292), ASPH (600582)	CytoRegions Not Set				false	arr[hg19] 8q11.23q12.3(54,801,326-62,630,045)x4-5	chr8:54801326-62630045
LST.OSCHP	4.0	Gain	11	q13.3	18.827	25	1	CCND1	1	CCND1 (168461)	CytoRegions Not Set				false	arr[hg19] 11q13.3(69,460,467-69,479,294)x4	chr11:69460467-69479294
LST.OSCHP	4.0	Gain	1	p34.2	1157.857	81	19	COL9A2, SMAP2, ZFP69B, ZFP69, EXO5, ZNF684, RIMS3, NFYC-AS1, NFYC, MIR30E, MIR30C1, KCNQ4, CITED4, CTPS1, SLFNL1-AS1, SLFNL1, SCMH1, FOXO6, LOC101929901	11	COL9A2 (120260), SMAP2 (616916), ZFP69 (617939), RIMS3 (611600), NFYC (605344), MIR30C1 (615151), KCNQ4 (603537), CITED4 (606815), CTPS1 (123860), SCMH1 (616396), FOXO6 (611457)	CytoRegions Not Set				false	arr[hg19] 1p34.2(40,776,751-41,934,608)x4	chr1:40776751-41934608
LST.OSCHP	4.0	Gain	5	q11.2	55.509	19	1	GAPT	0		CytoRegions Not Set				false	arr[hg19] 5q11.2(57,762,654-57,818,163)x4	chr5:57762654-57818163
LST.OSCHP	4.0	Gain	12	q13.13	3496.691	339	122	KRT7, KRT7-AS, KRT87P, KRT86, KRT81, KRT83, KRT85, KRT84, KRT82, KRT75, KRT6B, KRT6C, KRT6A, KRT5, KRT71, KRT74, KRT72, KRT73, KRT73-AS1, KRT2, KRT1, KRT77, KRT76, KRT3, KRT4, KRT79, KRT78, KRT8, KRT18, EIF4B, LOC283335, TNS2, MIR6757, SPRYD3, IGFBP6, SOAT2, CSAD, ZNF740, ITGB7, RARG, MFSD5, ESPL1, PFDN5, C12orf10, AAAS, SP7, SP1, AMHR2, PRR13, PCBP2, PCBP2-OT1, MAP3K12, TARBP2, NPFF, ATF7, LOC100652999, ATP5MC2, CALCOCO1, CISTR, HOXC13-AS, HOXC13, HOXC12, HOTAIR, HOXC11, HOXC-AS3, HOXC10, MIR196A2, HOXC-AS2, HOXC-AS1, HOXC9, HOXC8, HOXC6, HOXC5, HOXC4, MIR615, FLJ12825, LOC100240735, LOC100240734, LINC02381, SMUG1, CBX5, MIR3198-2, HNRNPA1, HNRNPA1P10, NFE2, COPZ1, MIR148B, LOC102724050, GPR84, ZNF385A, ITGA5, GTSF1, NCKAP1L, PDE1B, PPP1R1A, GLYCAM1, LACRT, DCD, MUCL1, TESPA1, NEUROD4, OR9K2, OR10A7, OR6C74, OR6C6, OR6C1, OR6C3, OR6C75, OR6C65, OR6C76, OR6C2, OR6C70, OR6C68, OR6C4, OR2AP1, OR10P1, METTL7B, ITGA7, BLOC1S1, BLOC1S1-RDH5, RDH5, CD63	80	KRT7 (148059), KRT86 (601928), KRT81 (602153), KRT83 (602765), KRT85 (602767), KRT84 (602766), KRT82 (601078), KRT75 (609025), KRT6B (148042), KRT6C (612315), KRT6A (148041), KRT5 (148040), KRT71 (608245), KRT74 (608248), KRT72 (608246), KRT73 (608247), KRT2 (600194), KRT1 (139350), KRT77 (611158), KRT76 (616671), KRT3 (148043), KRT4 (123940), KRT79 (611160), KRT78 (611159), KRT8 (148060), KRT18 (148070), EIF4B (603928), TNS2 (607717), IGFBP6 (146735), SOAT2 (601311), CSAD (616569), ITGB7 (147559), RARG (180190), ESPL1 (604143), PFDN5 (604899), C12orf10 (611366), AAAS (605378), SP7 (606633), SP1 (189906), AMHR2 (600956), PRR13 (610459), PCBP2 (601210), MAP3K12 (600447), TARBP2 (605053), NPFF (604643), ATF7 (606371), ATP5MC2 (603193), HOXC13 (142976), HOXC12 (142975), HOTAIR (611400), HOXC11 (605559), HOXC10 (605560), MIR196A2 (609687), HOXC9 (142971), HOXC8 (142970), HOXC6 (142972), HOXC5 (142973), HOXC4 (142974), SMUG1 (607753), CBX5 (604478), HNRNPA1 (164017), NFE2 (601490), COPZ1 (615472), MIR148B (613787), GPR84 (606383), ZNF385A (609124), ITGA5 (135620), GTSF1 (617484), NCKAP1L (141180), PDE1B (171891), PPP1R1A (613246), LACRT (607360), DCD (606634), MUCL1 (610857), TESPA1 (615664), NEUROD4 (611635), ITGA7 (600536), BLOC1S1 (601444), RDH5 (601617), CD63 (155740)	CytoRegions Not Set				false	arr[hg19] 12q13.13q13.2(52,629,678-56,126,369)x4	chr12:52629678-56126369
LST.OSCHP	4.0	Gain	5	q11.2	372.753	26	2	LOC101928505, LINC02225	0		CytoRegions Not Set				false	arr[hg19] 5q11.2(56,919,629-57,292,382)x4	chr5:56919629-57292382
LST.OSCHP	4.0	Gain	8	q11.21	5737.761	385	18	LOC101929268, LOC101929217, EFCAB1, SNAI2, PPDPFL, LOC100507464, SNTG1, PXDNL, PCMTD1, ST18, LOC101929341, ALKAL1, RB1CC1, NPBWR1, OPRK1, LOC100507516, ATP6V1H, RGS20	9	SNAI2 (602150), SNTG1 (608714), PXDNL (615904), ST18 (617155), RB1CC1 (606837), NPBWR1 (600730), OPRK1 (165196), ATP6V1H (608861), RGS20 (607193)	CytoRegions Not Set				false	arr[hg19] 8q11.21q11.23(49,046,676-54,784,437)x4	chr8:49046676-54784437
LST.OSCHP	4.0	Gain	11	q13.4	208.731	19	10	NUMA1, MIR3165, LRTOMT, LAMTOR1, ANAPC15, FOLR3, FOLR1, FOLR2, INPPL1, PHOX2A	9	NUMA1 (164009), LRTOMT (612414), LAMTOR1 (613510), ANAPC15 (614717), FOLR3 (602469), FOLR1 (136430), FOLR2 (136425), INPPL1 (600829), PHOX2A (602753)	CytoRegions Not Set				false	arr[hg19] 11q13.4(71,775,571-71,984,302)x4	chr11:71775571-71984302
LST.OSCHP	4.0	Gain	5	p15.33	1266.163	98	28	PLEKHG4B, LRRC14B, CCDC127, SDHA, HRAT5, PDCD6, AHRR, EXOC3-AS1, EXOC3, PP7080, SLC9A3, SLC9A3-AS1, MIR4456, LOC100996325, CEP72, TPPP, ZDHHC11B, ZDHHC11, BRD9, TRIP13, LOC100506688, NKD2, SLC12A7, MIR4635, CTD-3080P12.3, SLC6A19, SLC6A18, TERT	13	SDHA (600857), PDCD6 (601057), AHRR (606517), EXOC3 (608186), SLC9A3 (182307), CEP72 (616475), TPPP (608773), TRIP13 (604507), NKD2 (607852), SLC12A7 (604879), SLC6A19 (608893), SLC6A18 (610300), TERT (187270)	CytoRegions Not Set				false	arr[hg19] 5p15.33(38,138-1,304,301)x4	chr5:38138-1304301
LST.OSCHP	4.0	Gain	14	q21.2	2146.4	144	4	RPL10L, MDGA2, MIR548Y, LINC00648	1	MDGA2 (611128)	CytoRegions Not Set				false	arr[hg19] 14q21.2q21.3(46,977,510-49,123,910)x4	chr14:46977510-49123910
LST.OSCHP	3.67	Gain	10	q22.1	380.513	30	5	ADAMTS14, TBATA, SGPL1, PCBD1, LOC105378349	4	ADAMTS14 (607506), TBATA (612640), SGPL1 (603729), PCBD1 (126090)	CytoRegions Not Set				false	arr[hg19] 10q22.1(72,394,001-72,774,514)x3-4	chr10:72394001-72774514
LST.OSCHP	3.67	Gain	12	q12	8994.532	681	137	ADAMTS20, PUS7L, IRAK4, TWF1, TMEM117, NELL2, DBX2, RACGAP1P, PLEKHA8P1, RNY5, ANO6, LINC00938, ARID2, SCAF11, SLC38A1, SLC38A2, LOC100288798, SLC38A4, AMIGO2, PCED1B, MIR4698, PCED1B-AS1, LOC105369747, MIR4494, LINC02156, RPAP3, ENDOU, RAPGEF3, SLC48A1, HDAC7, VDR, TMEM106C, COL2A1, SENP1, PFKM, MIR6505, ASB8, CCDC184, OR10AD1, H1FNT, ZNF641, ANP32D, C12orf54, OR8S1, LALBA, KANSL2, SNORA2C, MIR1291, SNORA2A, SNORA2B, CCNT1, TEX49, ADCY6, MIR4701, LOC100506125, CACNB3, DDX23, RND1, CCDC65, FKBP11, ARF3, WNT10B, WNT1, DDN, DDN-AS1, PRKAG1, KMT2D, RHEBL1, DHH, LMBR1L, TUBA1B, TUBA1A, TUBA1C, LOC101927267, PRPH, TROAP, C1QL4, DNAJC22, SPATS2, LOC100335030, KCNH3, MCRS1, FAM186B, PRPF40B, FMNL3, TMBIM6, NCKAP5L, BCDIN3D-AS1, BCDIN3D, FAIM2, LINC02396, LINC02395, AQP2, LOC101927318, AQP5, AQP6, RACGAP1, ASIC1, SMARCD1, GPD1, COX14, CERS5, LIMA1, MIR1293, FAM186A, LARP4, SNORD133, DIP2B, ATF1, TMPRSS12, METTL7A, HIGD1C, SLC11A2, LETMD1, CSRNP2, TFCP2, POU6F1, DAZAP2, SMAGP, BIN2, CELA1, GALNT6, SLC4A8, SCN8A, FIGNL2, LOC105369971, ANKRD33, ACVRL1, ACVR1B, GRASP-AS1, GRASP, NR4A1, ATG101, OR7E47P, KRT80, C12orf80, LINC00592	80	ADAMTS20 (611681), IRAK4 (606883), TWF1 (610932), NELL2 (602320), RNY5 (601824), ANO6 (608663), ARID2 (609539), SCAF11 (603668), SLC38A1 (608490), SLC38A2 (605180), SLC38A4 (608065), AMIGO2 (615690), RPAP3 (611477), ENDOU (606720), RAPGEF3 (606057), SLC48A1 (612187), HDAC7 (606542), VDR (601769), COL2A1 (120140), SENP1 (612157), PFKM (610681), ASB8 (615053), ZNF641 (613906), ANP32D (606878), LALBA (149750), KANSL2 (615488), SNORA2C (615487), CCNT1 (143055), ADCY6 (600294), CACNB3 (601958), DDX23 (612172), RND1 (609038), CCDC65 (611088), FKBP11 (610571), ARF3 (103190), WNT10B (601906), WNT1 (164820), DDN (610588), PRKAG1 (602742), KMT2D (602113), DHH (605423), LMBR1L (610007), TUBA1B (602530), TUBA1A (602529), PRPH (170710), TROAP (603872), C1QL4 (615229), SPATS2 (611667), KCNH3 (604527), MCRS1 (609504), FMNL3 (616288), TMBIM6 (600748), NCKAP5L (615104), FAIM2 (604306), AQP2 (107777), AQP5 (600442), AQP6 (601383), RACGAP1 (604980), ASIC1 (602866), SMARCD1 (601735), GPD1 (138420), COX14 (614478), CERS5 (615335), LIMA1 (608364), DIP2B (611379), ATF1 (123803), SLC11A2 (600523), TFCP2 (189889), DAZAP2 (607431), BIN2 (605936), CELA1 (130120), GALNT6 (605148), SLC4A8 (605024), SCN8A (600702), ACVRL1 (601284), ACVR1B (601300), GRASP (612027), NR4A1 (139139), ATG101 (615089), KRT80 (611161)	CytoRegions Not Set				false	arr[hg19] 12q12q13.13(43,629,226-52,623,758)x3-4	chr12:43629226-52623758
LST.OSCHP	3.67	Gain	7	q11.23	545.428	47	15	BAZ1B, BCL7B, TBL2, MLXIPL, VPS37D, DNAJC30, BUD23, STX1A, MIR4284, ABHD11-AS1, ABHD11, CLDN3, CLDN4, METTL27, TMEM270	12	BAZ1B (605681), BCL7B (605846), TBL2 (605842), MLXIPL (605678), VPS37D (610039), BUD23 (615733), STX1A (186590), ABHD11-AS1 (612545), CLDN3 (602910), CLDN4 (602909), METTL27 (612546), TMEM270 (612547)	CytoRegions Not Set				false	arr[hg19] 7q11.23(72,877,165-73,422,593)x3-4	chr7:72877165-73422593
LST.OSCHP	3.67	Gain	22	q13.1	427.025	26	18	CARD10, CDC42EP1, LGALS2, GGA1, SH3BP1, LOC101927051, PDXP, LGALS1, NOL12, TRIOBP, H1F0, GCAT, GALR3, ANKRD54, MIR658, MIR659, EIF3L, MICALL1	13	CARD10 (607209), CDC42EP1 (606084), LGALS2 (150571), GGA1 (606004), SH3BP1 (617368), PDXP (609246), LGALS1 (150570), TRIOBP (609761), H1F0 (142708), GCAT (607422), GALR3 (603692), ANKRD54 (613383), MIR659 (613556)	CytoRegions Not Set				false	arr[hg19] 22q13.1(37,902,499-38,329,524)x3-4	chr22:37902499-38329524
LST.OSCHP	3.67	Gain	5	p12	6426.169	226	13	CCL28, TMEM267, C5orf34, PAIP1, NNT-AS1, NNT, FGF10, FGF10-AS1, LINC02224, MRPS30-DT, MRPS30, HCN1, EMB	7	CCL28 (605240), PAIP1 (605184), NNT (607878), FGF10 (602115), MRPS30 (611991), HCN1 (602780), EMB (615669)	CytoRegions Not Set				false	arr[hg19] 5p12q11.1(43,410,616-49,836,785)x3-4	chr5:43410616-49836785
LST.OSCHP	3.67	Gain	7	q11.23	119.858	21	1	CLIP2	1	CLIP2 (603432)	CytoRegions Not Set				false	arr[hg19] 7q11.23(73,735,334-73,855,192)x3-4	chr7:73735334-73855192
LST.OSCHP	3.67	Gain	20	p11.21	39275.484	2658	538	CST4, CST1, CST2, CST5, GGTLC1, LINC01721, SYNDIG1, CST7, APMAP, ACSS1, VSX1, LOC284798, LOC101926889, ENTPD6, PYGB, ABHD12, GINS1, NINL, NANP, ZNF337-AS1, ZNF337, LOC105372582, LOC105379511, FAM182B, LOC101926935, LINC01733, LOC100134868, FAM182A, NCOR1P1, MIR663AHG, MIR663A, LINC01597, FAM242B, FRG1BP, FRG1DP, MLLT10P1, DEFB115, DEFB116, DEFB118, DEFB119, DEFB121, DEFB122, DEFB123, DEFB124, REM1, LINC00028, HM13, HM13-AS1, ID1, MIR3193, COX4I2, BCL2L1, ABALON, TPX2, MYLK2, FOXS1, DUSP15, TTLL9, PDRG1, XKR7, CCM2L, HCK, TM9SF4, TSPY26P, PLAGL2, POFUT1, MIR1825, KIF3B, ASXL1, NOL4L, LOC101929698, NOL4L-DT, C20orf203, COMMD7, DNMT3B, MAPRE1, EFCAB8, SUN5, BPIFB2, BPIFB6, BPIFB3, BPIFB4, BPIFA2, BPIFA4P, BPIFA3, BPIFA1, BPIFB1, CDK5RAP1, SNTA1, CBFA2T2, NECAB3, C20orf144, ACTL10, E2F1, PXMP4, ZNF341, ZNF341-AS1, CHMP4B, RALY-AS1, RALY, MIR4755, EIF2S2, ASIP, AHCY, ITCH, MIR644A, DYNLRB1, MAP1LC3A, PIGU, TP53INP2, NCOA6, HMGB3P1, GGT7, ACSS2, GSS, MYH7B, MIR499A, MIR499B, TRPC4AP, EDEM2, MMP24-AS1-EDEM2, PROCR, MMP24, MMP24OS, EIF6, FAM83C-AS1, FAM83C, UQCC1, GDF5OS, GDF5, MIR1289-1, CEP250, C20orf173, ERGIC3, FER1L4, SPAG4, CPNE1, RBM12, NFS1, ROMO1, RBM39, PHF20, SCAND1, CNBD2, NORAD, EPB41L1, LOC100130373, AAR2, DLGAP4, DLGAP4-AS1, MYL9, TGIF2, TGIF2-RAB5IF, RAB5IF, SLA2, NDRG3, DSN1, SOGA1, TLDC2, SAMHD1, RBL1, MROH8, RPN2, GHRH, MANBAL, SRC, BLCAP, NNAT, LINC00489, LOC100287792, CTNNBL1, VSTM2L, TTI1, RPRD1B, TGM2, KIAA1755, LOC149684, BPI, LBP, SNHG17, SNORA71B, SNORA71A, SNORA71C, SNORA71D, SNHG11, SNORA71E, SNORA60, RALGAPB, MIR548O2, ADIG, ARHGAP40, SLC32A1, ACTR5, PPP1R16B, FAM83D, DHX35, LINC01734, LINC01370, MAFB, SNORD154, LOC100128988, TOP1, PLCG1-AS1, PLCG1, MIR6871, ZHX3, LPIN3, EMILIN3, CHD6, PTPRT, LOC101927159, LOC101927138, SRSF6, L3MBTL1, SGK2, IFT52, MYBL2, GTSF1L, LINC01728, TOX2, JPH2, OSER1, OSER1-DT, GDAP1L1, FITM2, R3HDML, HNF4A, HNF4A-AS1, MIR3646, LINC01430, LINC01620, TTPAL, SERINC3, PKIG, ADA, LINC01260, KCNK15-AS1, WISP2, KCNK15, RIMS4, YWHAB, PABPC1L, TOMM34, STK4-AS1, STK4, KCNS1, WFDC5, WFDC12, PI3, SEMG1, SEMG2, SLPI, MATN4, RBPJL, SDC4, SYS1, SYS1-DBNDD2, TP53TG5, DBNDD2, PIGT, MIR6812, WFDC2, SPINT3, WFDC6, EPPIN-WFDC6, EPPIN, WFDC8, WFDC9, WFDC10A, WFDC11, WFDC10B, WFDC13, MIR3617, SPINT4, WFDC3, DNTTIP1, UBE2C, TNNC2, SNX21, ACOT8, ZSWIM3, ZSWIM1, SPATA25, NEURL2, CTSA, PLTP, PCIF1, ZNF335, MMP9, SLC12A5-AS1, SLC12A5, NCOA5, CD40, CDH22, SLC35C2, ELMO2, LOC105372633, ZNF663P, MKRN7P, ZNF334, OCSTAMP, SLC13A3, TP53RK, SLC2A10, EYA2, MIR3616, ZMYND8, LOC100131496, LOC101927377, LINC01754, NCOA3, SULF2, LINC01522, LINC01523, LINC00494, PREX1, ARFGEF2, CSE1L-AS1, CSE1L, STAU1, DDX27, ZNFX1, ZFAS1, SNORD12C, SNORD12B, SNORD12, KCNB1, PTGIS, B4GALT5, SLC9A8, SPATA2, LOC105372653, RNF114, SNAI1, TRERNA1, UBE2V1, TMEM189-UBE2V1, TMEM189, LINC01273, CEBPB-AS1, CEBPB, SMIM25, LINC01270, LINC01271, PTPN1, MIR645, RIPOR3, MIR1302-5, LOC100506175, PARD6B, BCAS4, ADNP, ADNP-AS1, DPM1, MOCS3, KCNG1, NFATC2, MIR3194, ATP9A, SALL4, LINC01429, ZFP64, LINC01524, TSHZ2, LOC101927770, ZNF217, LOC105372672, SUMO1P1, BCAS1, MIR4756, CYP24A1, PFDN4, DOK5, LINC01441, LINC01440, CBLN4, MC3R, FAM210B, AURKA, CSTF1, CASS4, RTF2, GCNT7, FAM209A, FAM209B, LINC01716, TFAP2C, BMP7, BMP7-AS1, MIR4325, SPO11, RAE1, MTRNR2L3, LOC100291105, RBM38, CTCFL, PCK1, ZBP1, PMEPA1, NKILA, LINC01742, C20orf85, ANKRD60, PPP4R1L, RAB22A, VAPB, APCDD1L, APCDD1L-DT, LINC01711, STX16, STX16-NPEPL1, NPEPL1, LOC105372695, MIR296, MIR298, GNAS-AS1, GNAS, LOC101927932, NELFCD, CTSZ, TUBB1, ATP5F1E, SLMO2-ATP5E, PRELID3B, ZNF831, EDN3, PHACTR3, LOC100506384, SYCP2, FAM217B, PPP1R3D, CDH26, C20orf197, LOC729296, MIR646HG, MIR646, LOC101928048, MIR4533, MIR548AG2, LINC01718, CDH4, LOC100128310, MIR1257, TAF4, MIR3195, LSM14B, PSMA7, SS18L1, MTG2, HRH3, OSBPL2, ADRM1, LAMA5, MIR4758, LAMA5-AS1, RPS21, CABLES2, RBBP8NL, GATA5, MIR1-1HG-AS1, MIR1-1HG, MIR1-1, MIR133A2, SLCO4A1, SLCO4A1-AS1, NTSR1, LINC00659, MRGBP, OGFR-AS1, OGFR, COL9A3, TCFL5, DPH3P1, DIDO1, SNORA117, GID8, SLC17A9, BHLHE23, LINC01749, LINC00029, LINC01056, HAR1B, HAR1A, MIR124-3, YTHDF1, BIRC7, MIR3196, NKAIN4, FLJ16779, ARFGAP1, MIR4326, COL20A1, CHRNA4, LOC100130587, KCNQ2, EEF1A2, PPDPF, PTK6, SRMS, FNDC11, HELZ2, GMEB2, MHENCR, STMN3, RTEL1, RTEL1-TNFRSF6B, TNFRSF6B, ARFRP1, ZGPAT, LIME1, SLC2A4RG, ZBTB46, ZBTB46-AS1, ABHD16B, TPD52L2, DNAJC5, MIR941-1, MIR941-5, MIR941-4, MIR941-3, MIR941-2, UCKL1, MIR1914, MIR647, UCKL1-AS1, ZNF512B, SAMD10, PRPF6, C20orf204, SOX18, TCEA2, RGS19, MIR6813, OPRL1, LKAAEAR1, NPBWR2, MYT1, PCMTD2	290	CST4 (123857), CST1 (123855), CST2 (123856), CST5 (123858), GGTLC1 (612338), SYNDIG1 (614311), CST7 (603253), APMAP (615884), ACSS1 (614355), VSX1 (605020), ENTPD6 (603160), PYGB (138550), ABHD12 (613599), GINS1 (610608), NINL (609580), NANP (610763), DEFB118 (607650), DEFB119 (615997), DEFB121 (616075), DEFB122 (616077), DEFB123 (616076), REM1 (610388), HM13 (607106), ID1 (600349), COX4I2 (607976), BCL2L1 (600039), TPX2 (605917), MYLK2 (606566), FOXS1 (602939), DUSP15 (616776), PDRG1 (610789), HCK (142370), TM9SF4 (617727), PLAGL2 (604866), POFUT1 (607491), KIF3B (603754), ASXL1 (612990), COMMD7 (616703), DNMT3B (602900), MAPRE1 (603108), SUN5 (613942), BPIFB2 (614108), BPIFB6 (614110), BPIFB3 (615717), BPIFB4 (615718), BPIFA4P (607627), BPIFA1 (607412), CDK5RAP1 (608200), SNTA1 (601017), CBFA2T2 (603672), NECAB3 (612478), E2F1 (189971), PXMP4 (616397), CHMP4B (610897), RALY (614663), EIF2S2 (603908), ASIP (600201), AHCY (180960), ITCH (606409), DYNLRB1 (607167), MAP1LC3A (601242), PIGU (608528), TP53INP2 (617549), NCOA6 (605299), GGT7 (612342), ACSS2 (605832), GSS (601002), MYH7B (609928), MIR499A (613614), TRPC4AP (608430), EDEM2 (610302), PROCR (600646), MMP24 (604871), EIF6 (602912), UQCC1 (611797), GDF5 (601146), CEP250 (609689), ERGIC3 (616971), SPAG4 (603038), CPNE1 (604205), RBM12 (607179), NFS1 (603485), RBM39 (604739), PHF20 (610335), SCAND1 (610416), NORAD (617037), EPB41L1 (602879), AAR2 (617365), DLGAP4 (616191), MYL9 (609905), TGIF2 (607294), SLA2 (606577), NDRG3 (605273), DSN1 (609175), SAMHD1 (606754), RBL1 (116957), RPN2 (180490), GHRH (139190), SRC (190090), BLCAP (613110), NNAT (603106), CTNNBL1 (611537), VSTM2L (616537), TTI1 (614425), RPRD1B (614694), TGM2 (190196), BPI (109195), LBP (151990), ADIG (611396), SLC32A1 (616440), PPP1R16B (613275), LINC01370 (617038), MAFB (608968), TOP1 (126420), PLCG1 (172420), ZHX3 (609598), LPIN3 (605520), EMILIN3 (608929), CHD6 (616114), PTPRT (608712), SRSF6 (601944), L3MBTL1 (608802), SGK2 (607589), IFT52 (617094), MYBL2 (601415), TOX2 (611163), JPH2 (605267), FITM2 (612029), HNF4A (600281), SERINC3 (607165), PKIG (604932), ADA (608958), WISP2 (603399), KCNK15 (607368), RIMS4 (611601), YWHAB (601289), TOMM34 (616049), STK4 (604965), KCNS1 (602905), WFDC5 (605161), WFDC12 (609872), PI3 (182257), SEMG1 (182140), SEMG2 (182141), SLPI (107285), MATN4 (603897), RBPJL (616104), SDC4 (600017), SYS1 (612979), TP53TG5 (617316), DBNDD2 (611453), PIGT (610272), WFDC2 (617548), SPINT3 (613941), EPPIN (609031), DNTTIP1 (611388), UBE2C (605574), TNNC2 (191039), ACOT8 (608123), NEURL2 (608597), CTSA (613111), PLTP (172425), ZNF335 (610827), MMP9 (120361), SLC12A5 (606726), NCOA5 (616825), CD40 (109535), CDH22 (609920), ELMO2 (606421), SLC13A3 (606411), TP53RK (608679), SLC2A10 (606145), EYA2 (601654), ZMYND8 (615713), NCOA3 (601937), SULF2 (610013), PREX1 (606905), ARFGEF2 (605371), CSE1L (601342), STAU1 (601716), DDX27 (616621), KCNB1 (600397), PTGIS (601699), B4GALT5 (604016), SLC9A8 (612730), SPATA2 (607662), RNF114 (612451), SNAI1 (604238), UBE2V1 (602995), TMEM189 (610994), CEBPB (189965), PTPN1 (176885), PARD6B (608975), BCAS4 (607471), ADNP (611386), DPM1 (603503), MOCS3 (609277), KCNG1 (603788), NFATC2 (600490), ATP9A (609126), SALL4 (607343), TSHZ2 (614118), ZNF217 (602967), BCAS1 (602968), CYP24A1 (126065), PFDN4 (604898), DOK5 (608334), CBLN4 (615029), MC3R (155540), AURKA (603072), CSTF1 (600369), TFAP2C (601602), BMP7 (112267), SPO11 (605114), RAE1 (603343), RBM38 (612428), CTCFL (607022), PCK1 (614168), ZBP1 (606750), PMEPA1 (606564), RAB22A (612966), VAPB (605704), STX16 (603666), MIR296 (610945), MIR298 (614914), GNAS-AS1 (610540), GNAS (139320), NELFCD (605297), CTSZ (603169), TUBB1 (612901), ATP5F1E (606153), EDN3 (131242), PHACTR3 (608725), SYCP2 (604105), PPP1R3D (603326), CDH26 (617685), CDH4 (603006), TAF4 (601796), PSMA7 (606607), SS18L1 (606472), MTG2 (610919), HRH3 (604525), OSBPL2 (606731), ADRM1 (610650), LAMA5 (601033), RPS21 (180477), GATA5 (611496), MIR1-1 (609326), MIR133A2 (610255), SLCO4A1 (612436), NTSR1 (162651), MRGBP (611157), OGFR (606459), COL9A3 (120270), TCFL5 (604745), DIDO1 (604140), GID8 (611625), SLC17A9 (612107), BHLHE23 (609331), HAR1B (610557), HAR1A (610556), YTHDF1 (616529), BIRC7 (605737), NKAIN4 (612873), ARFGAP1 (608377), CHRNA4 (118504), KCNQ2 (602235), EEF1A2 (602959), PTK6 (602004), SRMS (617797), HELZ2 (611265), GMEB2 (607451), STMN3 (608362), RTEL1 (608833), TNFRSF6B (603361), ARFRP1 (604699), LIME1 (609809), SLC2A4RG (609493), ZBTB46 (614639), TPD52L2 (603747), DNAJC5 (611203), UCKL1 (610866), ZNF512B (617886), PRPF6 (613979), SOX18 (601618), TCEA2 (604784), RGS19 (605071), OPRL1 (602548), NPBWR2 (600731), MYT1 (600379)	CytoRegions Not Set				false	arr[hg19] 20p11.21q13.33(23,636,979-62,912,463)x3-4	chr20:23636979-62912463
LST.OSCHP	3.67	Gain	4	p16.2	459.705	32	5	EVC, CRMP1, MIR378D1, JAKMIP1, LINC02495	3	EVC (604831), CRMP1 (602462), JAKMIP1 (611195)	CytoRegions Not Set				false	arr[hg19] 4p16.2p16.1(5,774,505-6,234,210)x3-4	chr4:5774505-6234210
LST.OSCHP	3.67	Gain	22	q11.21	131.023	38	6	GNB1L, RTL10, TXNRD2, COMT, MIR4761, ARVCF	4	GNB1L (610778), TXNRD2 (606448), COMT (116790), ARVCF (602269)	CytoRegions Not Set				false	arr[hg19] 22q11.21(19,837,574-19,968,597)x3-4	chr22:19837574-19968597
LST.OSCHP	3.67	Gain	11	q13.2	2244.877	224	44	GPR152, CABP4, TMEM134, AIP, MIR6752, PITPNM1, CDK2AP2, CABP2, GSTP1, C11orf72, NDUFV1, DOC2GP, NUDT8, TBX10, ACY3, ALDH3B2, FAM86C2P, UNC93B1, ALDH3B1, NDUFS8, MIR7113, MIR4691, TCIRG1, MIR6753, CHKA, KMT5B, C11orf24, LRP5, PPP6R3, GAL, TESMIN, CPT1A, MRPL21, IGHMBP2, MRGPRD, MRGPRF, MRGPRF-AS1, TPCN2, MIR3164, LOC338694, MYEOV, LOC102724265, LINC01488, CCND1	29	CABP4 (608965), AIP (605555), PITPNM1 (608794), CABP2 (607314), GSTP1 (134660), NDUFV1 (161015), TBX10 (604648), ACY3 (614413), ALDH3B2 (601917), UNC93B1 (608204), ALDH3B1 (600466), NDUFS8 (602141), TCIRG1 (604592), CHKA (118491), KMT5B (610881), C11orf24 (610880), LRP5 (603506), PPP6R3 (610879), GAL (137035), TESMIN (604374), CPT1A (600528), MRPL21 (611834), IGHMBP2 (600502), MRGPRD (607231), MRGPRF (607233), TPCN2 (612163), MYEOV (605625), LINC01488 (617696), CCND1 (168461)	CytoRegions Not Set				false	arr[hg19] 11q13.2q13.3(67,213,517-69,458,394)x3-4	chr11:67213517-69458394
LST.OSCHP	3.67	Gain	22	q11.23	57.611	24	5	GSTT4, LOC391322, GSTT1-AS1, GSTT1, GSTTP2	1	GSTT1 (600436)	CytoRegions Not Set				false	arr[hg19] 22q11.23(24,330,627-24,388,238)x3-4	chr22:24330627-24388238
LST.OSCHP	3.67	Gain	12	q24.22	16913.012	1204	211	LINC00173, MAP1LC3B2, C12orf49, RNFT2, HRK, FBXW8, LOC100506551, TESC, TESC-AS1, FBXO21, NOS1, KSR2, RFC5, WSB2, VSIG10, PEBP1, TAOK3, SUDS3, LINC02423, LINC02439, SRRM4, LOC105370024, HSPB8, LINC00934, CCDC60, TMEM233, PRKAB1, CIT, MIR1178, BICDL1, RAB35, GCN1, MIR4498, RPLP0, PXN-AS1, PXN, SIRT4, PLA2G1B, MSI1, COX6A1, TRIAP1, GATC, SRSF9, DYNLL1, NRAV, COQ5, RNF10, POP5, CABP1, MLEC, UNC119B, MIR4700, ACADS, SPPL3, XLOC_009911, HNF1A-AS1, HNF1A, C12orf43, OASL, P2RX7, P2RX4, CAMKK2, ANAPC5, RNF34, KDM2B, MIR7107, MIR548AQ, ORAI1, MORN3, TMEM120B, RHOF, LINC01089, SETD1B, HPD, PSMD9, WDR66, BCL7A, LOC100506691, MLXIP, LRRC43, IL31, B3GNT4, DIABLO, LOC101593348, VPS33A, CLIP1, CLIP1-AS1, ZCCHC8, RSRC2, KNTC1, HCAR2, HCAR3, HCAR1, DENR, CCDC62, HIP1R, VPS37B, ABCB9, OGFOD2, ARL6IP4, PITPNM2, MIR4304, PITPNM2-AS1, MPHOSPH9, C12orf65, CDK2AP1, SBNO1, MIR8072, KMT5A, RILPL2, SNRNP35, RILPL1, MIR3908, LOC101927415, TMED2, DDX55, SNORA9B, EIF2B1, GTF2H3, TCTN2, ATP6V0A2, DNAH10, CCDC92, ZNF664-RFLNA, ZNF664, RFLNA, NCOR2, MIR6880, SCARB1, UBC, MIR5188, DHX37, BRI3BP, THRIL, AACS, TMEM132B, LINC00939, LINC02359, LOC283435, LINC02350, LINC02347, LOC100996671, LINC00944, LINC00943, LINC02372, LINC02405, LINC02376, LINC02375, LINC02411, LOC105370068, LINC02393, LINC00508, LINC00507, LINC02441, LINC02369, LINC02368, TMEM132C, MIR3612, SLC15A4, LOC100128276, GLT1D1, TMEM132D, TMEM132D-AS1, TMEM132D-AS2, LINC02418, LINC02419, FZD10-DT, FZD10, PIWIL1, RIMBP2, STX2, RAN, ADGRD1, ADGRD1-AS1, LINC01257, LINC02415, LINC02370, LINC02414, SFSWAP, MMP17, ULK1, PUS1, EP400, SNORA49, EP400P1, DDX51, NOC4L, LINC02361, GALNT9, LOC100130238, LOC101928416, FBRSL1, MIR6763, LRCOL1, P2RX2, POLE, PXMP2, PGAM5, ANKLE2, GOLGA3, CHFR, LOC101928530, ZNF605, ZNF26, LOC101928597, ZNF84, ZNF140, ZNF891, ZNF10, ZNF268, ANHX	114	HRK (603447), FBXW8 (609073), TESC (611585), FBXO21 (609095), NOS1 (163731), KSR2 (610737), RFC5 (600407), PEBP1 (604591), TAOK3 (616711), SUDS3 (608250), SRRM4 (613103), HSPB8 (608014), PRKAB1 (602740), CIT (605629), BICDL1 (617002), RAB35 (604199), GCN1 (605614), RPLP0 (180510), PXN (602505), SIRT4 (604482), PLA2G1B (172410), MSI1 (603328), COX6A1 (602072), TRIAP1 (614943), GATC (617210), SRSF9 (601943), DYNLL1 (601562), NRAV (616207), COQ5 (616359), RNF10 (615998), POP5 (609992), CABP1 (605563), MLEC (613802), ACADS (606885), SPPL3 (608240), HNF1A (142410), OASL (603281), P2RX7 (602566), P2RX4 (600846), CAMKK2 (615002), ANAPC5 (606948), RNF34 (608299), KDM2B (609078), ORAI1 (610277), TMEM120B (616551), SETD1B (611055), HPD (609695), PSMD9 (603146), BCL7A (601406), MLXIP (608090), IL31 (609509), B3GNT4 (605864), DIABLO (605219), VPS33A (610034), CLIP1 (179838), ZCCHC8 (616381), KNTC1 (607363), HCAR2 (609163), HCAR3 (606039), HCAR1 (606923), DENR (604550), CCDC62 (613481), HIP1R (605613), VPS37B (610037), ABCB9 (605453), ARL6IP4 (607668), PITPNM2 (608920), MPHOSPH9 (605501), C12orf65 (613541), CDK2AP1 (602198), SBNO1 (614274), KMT5A (607240), RILPL2 (614093), RILPL1 (614092), EIF2B1 (606686), GTF2H3 (601750), TCTN2 (613846), ATP6V0A2 (611716), DNAH10 (605884), ZNF664 (617890), RFLNA (615927), NCOR2 (600848), SCARB1 (601040), UBC (191340), DHX37 (617362), BRI3BP (615627), THRIL (615622), AACS (614364), SLC15A4 (615806), TMEM132D (611257), FZD10 (606147), PIWIL1 (605571), RIMBP2 (611602), STX2 (132350), RAN (601179), ADGRD1 (613639), SFSWAP (601945), MMP17 (602285), ULK1 (603168), PUS1 (608109), EP400 (606265), NOC4L (612819), GALNT9 (606251), P2RX2 (600844), POLE (174762), PXMP2 (617399), PGAM5 (614939), ANKLE2 (616062), GOLGA3 (602581), CHFR (605209), ZNF26 (194537), ZNF140 (604082), ZNF10 (194538), ZNF268 (604753)	CytoRegions Not Set				false	arr[hg19] 12q24.22q24.33(116,905,103-133,818,115)x3-4	chr12:116905103-133818115
LST.OSCHP	3.67	Gain	4	q35.2	547.997	34	5	LINC01262, LOC105379514, FRG1-DT, LINC01596, FRG1	1	FRG1 (601278)	CytoRegions Not Set				false	arr[hg19] 4q35.2(190,367,653-190,915,650)x3-4	chr4:190367653-190915650
LST.OSCHP	3.67	Gain	11	q13.4	1550.439	102	24	LINC01537, PDE2A, MIR139, ARAP1, ARAP1-AS2, STARD10, MIR4692, ATG16L2, FCHSD2, P2RY2, P2RY6, LOC100287837, ARHGEF17, RELT, FAM168A, PLEKHB1, RAB6A, MRPL48, COA4, PAAF1, DNAJB13, UCP2, UCP3, C2CD3	18	PDE2A (602658), MIR139 (615017), ARAP1 (606646), STARD10 (617382), FCHSD2 (617556), P2RY2 (600041), P2RY6 (602451), ARHGEF17 (617043), RELT (611211), FAM168A (616316), PLEKHB1 (607651), RAB6A (179513), MRPL48 (611853), COA4 (608016), DNAJB13 (610263), UCP2 (601693), UCP3 (602044), C2CD3 (615944)	CytoRegions Not Set				false	arr[hg19] 11q13.4(72,269,133-73,819,572)x3-4	chr11:72269133-73819572
LST.OSCHP	3.67	Gain	5	q11.2	456.492	49	2	LINC02101, PLK2	1	PLK2 (607023)	CytoRegions Not Set				false	arr[hg19] 5q11.2(57,302,019-57,758,511)x3-4	chr5:57302019-57758511
LST.OSCHP	3.67	Gain	8	q12.3	15850.9	1220	94	LINC02155, NKAIN3, NKAIN3-IT1, GGH, TTPA, YTHDF3-AS1, YTHDF3, LOC102724612, LINC01289, LOC102724623, MIR124-2HG, MIR124-2, LOC401463, BHLHE22, CYP7B1, LINC00251, LINC01299, ARMC1, MTFR1, PDE7A, DNAJC5B, TRIM55, CRH, LINC00967, RRS1-AS1, RRS1, ADHFE1, VXN, MYBL1, VCPIP1, C8orf44, C8orf44-SGK3, SGK3, PTTG3P, MCMDC2, SNHG6, SNORD87, TCF24, PPP1R42, COPS5, CSPP1, ARFGEF1, LOC102724708, CPA6, PREX2, C8orf34-AS1, C8orf34, LINC01592, LINC01603, SULF1, SLCO5A1, PRDM14, NCOA2, LOC101926892, TRAM1, LACTB2-AS1, LACTB2, XKR9, EYA1, MSC, MSC-AS1, TRPA1, LOC392232, KCNB2, LOC101926908, TERF1, SBSPON, C8orf89, RPL7, RDH10, RDH10-AS1, STAU2-AS1, STAU2, UBE2W, LINC01617, ELOC, TMEM70, LY96, JPH1, GDAP1, MIR5681A, MIR5681B, MIR2052HG, MIR2052, PI15, CRISPLD1, CASC9, HNF4G, LINC01111, ZFHX4-AS1, ZFHX4, MIR3149, PEX2, LOC102724874	45	NKAIN3 (612872), GGH (601509), TTPA (600415), BHLHE22 (613483), CYP7B1 (603711), PDE7A (171885), DNAJC5B (613945), TRIM55 (606469), CRH (122560), ADHFE1 (611083), MYBL1 (159405), VCPIP1 (611745), SGK3 (607591), MCMDC2 (617545), SNHG6 (612215), SNORD87 (612216), PPP1R42 (617720), COPS5 (604850), CSPP1 (611654), ARFGEF1 (604141), CPA6 (609562), PREX2 (612139), SULF1 (610012), SLCO5A1 (613543), PRDM14 (611781), NCOA2 (601993), TRAM1 (605190), EYA1 (601653), MSC (603628), TRPA1 (604775), KCNB2 (607738), TERF1 (600951), RPL7 (604166), RDH10 (607599), STAU2 (605920), UBE2W (614277), ELOC (600788), TMEM70 (612418), LY96 (605243), JPH1 (605266), GDAP1 (606598), PI15 (607076), HNF4G (605966), ZFHX4 (606940), PEX2 (170993)	CytoRegions Not Set				false	arr[hg19] 8q12.3q21.12(62,643,782-78,494,682)x3-4	chr8:62643782-78494682
LST.OSCHP	3.67	Gain	11	q13.3	2094.211	194	28	LTO1, FGF19, FGF4, FGF3, LOC101928443, LINC02584, ANO1, FADD, PPFIA1, MIR548K, CTTN, SHANK2, SHANK2-AS1, SHANK2-AS3, MIR3664, FLJ42102, DHCR7, NADSYN1, MIR6754, KRTAP5-7, KRTAP5-8, KRTAP5-9, KRTAP5-10, KRTAP5-11, FAM86C1, ALG1L9P, ZNF705E, DEFB108B	13	LTO1 (607224), FGF19 (603891), FGF4 (164980), FGF3 (164950), ANO1 (610108), FADD (602457), PPFIA1 (611054), CTTN (164765), SHANK2 (603290), DHCR7 (602858), NADSYN1 (608285), KRTAP5-9 (148021), FAM86C1 (616124)	CytoRegions Not Set				false	arr[hg19] 11q13.3q13.4(69,480,190-71,574,401)x3-4	chr11:69480190-71574401
LST.OSCHP	3.67	Gain	22	q11.21	952.4	82	27	MED15, POM121L4P, TMEM191A, PI4KA, SERPIND1, SNAP29, CRKL, LINC01637, AIFM3, LZTR1, THAP7, THAP7-AS1, TUBA3FP, P2RX6, SLC7A4, MIR649, P2RX6P, LRRC74B, BCRP2, LOC102724728, FAM230B, GGT2, POM121L8P, LOC100996335, RIMBP3C, RIMBP3B, HIC2	14	MED15 (607372), PI4KA (600286), SERPIND1 (142360), SNAP29 (604202), CRKL (602007), AIFM3 (617298), LZTR1 (600574), THAP7 (609518), P2RX6 (608077), SLC7A4 (603752), GGT2 (137181), RIMBP3C (612701), RIMBP3B (612700), HIC2 (607712)	CytoRegions Not Set				false	arr[hg19] 22q11.21(20,854,160-21,806,560)x3-4	chr22:20854160-21806560
LST.OSCHP	3.67	Gain	1	p34.3	3140.185	295	56	MIR4255, LINC01137, ZC3H12A, MIR6732, MEAF6, MIR5581, SNIP1, DNALI1, GNL2, RSPO1, C1orf109, CDCA8, EPHA10, MANEAL, YRDC, C1orf122, MTF1, INPP5B, SF3A3, FHL3, UTP11, POU3F1, MIR3659, LINC01343, LINC01685, RRAGC, MYCBP, GJA9-MYCBP, LOC105378663, GJA9, RHBDL2, AKIRIN1, NDUFS5, MACF1, KIAA0754, BMP8A, OXCT2P1, PPIEL, PABPC4, LOC101929516, SNORA55, HEYL, NT5C1A, HPCAL4, PPIE, BMP8B, OXCT2, LOC101929536, TRIT1, MYCL, MFSD2A, CAP1, PPT1, RLF, TMCO2, ZMPSTE24	36	ZC3H12A (610562), MEAF6 (611001), SNIP1 (608241), DNALI1 (602135), GNL2 (609365), RSPO1 (609595), C1orf109 (614799), CDCA8 (609977), EPHA10 (611123), YRDC (612276), MTF1 (600172), INPP5B (147264), SF3A3 (605596), FHL3 (602790), UTP11 (609440), POU3F1 (602479), RRAGC (608267), MYCBP (606535), GJA9 (611923), RHBDL2 (608962), AKIRIN1 (615164), NDUFS5 (603847), MACF1 (608271), PABPC4 (603407), HEYL (609034), NT5C1A (610525), PPIE (602435), BMP8B (602284), OXCT2 (610289), TRIT1 (617840), MYCL (164850), MFSD2A (614397), CAP1 (617801), PPT1 (600722), RLF (180610), ZMPSTE24 (606480)	CytoRegions Not Set				false	arr[hg19] 1p34.3p34.2(37,617,808-40,757,993)x3-4	chr1:37617808-40757993
LST.OSCHP	3.67	Gain	9	q21.33	7597.657	548	77	NAA35, GOLM1, LOC101927623, C9orf153, ISCA1, TUT7, GAS1, GAS1RR, LOC440173, LOC494127, C9orf170, DAPK1, DAPK1-IT1, CTSL, CTSL3P, CTSLP8, LOC392364, LOC497256, SPATA31E1, SPATA31C1, CDK20, LOC102724156, SPATA31C2, SPIN1, NXNL2, MIR4289, C9orf47, S1PR3, SHC3, CKS2, MIR3153, SECISBP2, SEMA4D, GADD45G, UNQ6494, LOC101927847, MIR4290HG, MIR4290, LINC01508, LINC01501, DIRAS2, SYK, LOC100129316, LINC00484, AUH, NFIL3, MIR3910-1, MIR3910-2, ROR2, SPTLC1, LOC100128076, LINC00475, PRSS47, IARS, MIR3651, SNORA84, NOL8, CENPP, OGN, OMD, ASPN, ECM2, MIR4670, IPPK, LOC100128361, BICD2, LOC101929748, ANKRD19P, ZNF484, LOC642943, FGD3, LOC101927954, SUSD3, CARD19, NINJ1, WNK2, C9orf129	33	GOLM1 (606804), ISCA1 (611006), TUT7 (613467), GAS1 (139185), DAPK1 (600831), CTSL (116880), CDK20 (610076), SPIN1 (609936), NXNL2 (615299), S1PR3 (601965), SHC3 (605263), CKS2 (116901), SECISBP2 (607693), SEMA4D (601866), GADD45G (604949), DIRAS2 (607863), SYK (600085), AUH (600529), NFIL3 (605327), ROR2 (602337), SPTLC1 (605712), IARS (600709), NOL8 (611534), CENPP (611505), OGN (602383), ASPN (608135), ECM2 (603479), BICD2 (609797), FGD3 (617554), SUSD3 (616429), CARD19 (617726), NINJ1 (602062), WNK2 (606249)	CytoRegions Not Set				false	arr[hg19] 9q21.33q22.31(88,538,023-96,135,680)x3-4	chr9:88538023-96135680
LST.OSCHP	3.67	Gain	16	p13.3	1989.369	134	109	POLR3K, SNRNP25, RHBDF1, MPG, NPRL3, HBZ, HBM, HBA2, HBA1, HBQ1, LUC7L, FAM234A, RGS11, ARHGDIG, PDIA2, AXIN1, MRPL28, TMEM8A, LOC100134368, NME4, DECR2, RAB11FIP3, LINC00235, CAPN15, MIR5587, MIR3176, PRR35, NHLRC4, PIGQ, RAB40C, WFIKKN1, METTL26, LOC100287175, MCRIP2, LOC105371038, WDR90, RHOT2, RHBDL1, LOC105371184, STUB1, JMJD8, WDR24, FBXL16, METRN, FAM173A, CCDC78, HAGHL, CIAO3, MSLN, MIR662, RPUSD1, CHTF18, GNG13, PRR25, LMF1, LMF1-AS1, SOX8, SSTR5-AS1, SSTR5, C1QTNF8, CACNA1H, TPSG1, TPSB2, TPSAB1, TPSD1, UBE2I, BAIAP3, TSR3, GNPTG, UNKL, C16orf91, CCDC154, CLCN7, PTX4, TELO2, IFT140, TMEM204, LOC105371046, CRAMP1, JPT2, MAPK8IP3, MIR3177, NME3, MRPS34, EME2, SPSB3, NUBP2, IGFALS, HAGH, FAHD1, MEIOB, LINC00254, LINC02124, HS3ST6, MSRB1, RPL3L, NDUFB10, RPS2, SNORA10, SNORA64, SNHG9, SNORA78, RNF151, TBL3, NOXO1, GFER, SYNGR3, ZNF598, NPW	70	POLR3K (606007), RHBDF1 (614403), MPG (156565), NPRL3 (600928), HBZ (142310), HBM (609639), HBA2 (141850), HBA1 (141800), HBQ1 (142240), LUC7L (607782), RGS11 (603895), ARHGDIG (602844), PDIA2 (608012), AXIN1 (603816), MRPL28 (604853), NME4 (601818), DECR2 (615839), RAB11FIP3 (608738), CAPN15 (603267), PIGQ (605754), WFIKKN1 (608021), RHOT2 (613889), RHBDL1 (603264), STUB1 (607207), FBXL16 (609082), METRN (610998), CCDC78 (614666), CIAO3 (611118), MSLN (601051), CHTF18 (613201), GNG13 (607298), LMF1 (611761), SOX8 (605923), SSTR5 (182455), C1QTNF8 (614147), CACNA1H (607904), TPSG1 (609341), TPSB2 (191081), TPSAB1 (191080), TPSD1 (609272), UBE2I (601661), BAIAP3 (604009), TSR3 (617058), GNPTG (607838), UNKL (617463), CLCN7 (602727), PTX4 (613442), TELO2 (611140), IFT140 (614620), TMEM204 (611002), MAPK8IP3 (605431), NME3 (601817), MRPS34 (611994), EME2 (610886), SPSB3 (611659), NUBP2 (610779), IGFALS (601489), HAGH (138760), FAHD1 (616320), MEIOB (617670), MSRB1 (606216), RPL3L (617416), NDUFB10 (603843), RPS2 (603624), TBL3 (605915), NOXO1 (611256), GFER (600924), SYNGR3 (603927), ZNF598 (617508), NPW (607997)	CytoRegions Not Set				false	arr[hg19] 16p13.3(83,886-2,073,255)x3-4	chr16:83886-2073255
LST.OSCHP	3.67	Gain	7	q36.3	710.604	48	4	PTPRN2, MIR595, LINC01022, MIR5707	1	PTPRN2 (601698)	CytoRegions Not Set				false	arr[hg19] 7q36.3(157,689,496-158,400,100)x3-4	chr7:157689496-158400100
LST.OSCHP	3.67	Gain	9	q31.2	1345.672	93	3	RAD23B, LINC01509, KLF4	2	RAD23B (600062), KLF4 (602253)	CytoRegions Not Set				false	arr[hg19] 9q31.2q31.3(110,056,738-111,402,410)x3-4	chr9:110056738-111402410
LST.OSCHP	3.67	Gain	18	q23	373.818	26	1	SALL3	1	SALL3 (605079)	CytoRegions Not Set				false	arr[hg19] 18q23(76,406,357-76,780,175)x3-4	chr18:76406357-76780175
LST.OSCHP	3.67	Gain	11	p15.5	368.94	46	25	SCGB1C2, SCGB1C1, ODF3, BET1L, RIC8A, MIR6743, SIRT3, PSMD13, NLRP6, PGGHG, IFITM5, IFITM2, IFITM1, IFITM3, B4GALNT4, PKP3, SIGIRR, ANO9, PTDSS2, RNH1, HRAS, LRRC56, LMNTD2, LOC692247, RASSF7	18	SCGB1C1 (610176), ODF3 (608356), BET1L (615417), RIC8A (609146), SIRT3 (604481), PSMD13 (603481), NLRP6 (609650), PGGHG (617032), IFITM5 (614757), IFITM2 (605578), IFITM1 (604456), IFITM3 (605579), PKP3 (605561), SIGIRR (605478), PTDSS2 (612793), RNH1 (173320), HRAS (190020), RASSF7 (143023)	CytoRegions Not Set				false	arr[hg19] 11p15.5(192,763-561,703)x3-4	chr11:192763-561703
LST.OSCHP	3.67	Gain	12	p12.2	3171.28	236	20	SLCO1B3, SLCO1B7, SLCO1B1, SLCO1A2, IAPP, PYROXD1, RECQL, GOLT1B, SPX, GYS2, LDHB, KCNJ8, ABCC9, CMAS, ST8SIA1, C2CD5, LOC105369691, ETNK1, LOC101928441, SOX5	15	SLCO1B3 (605495), SLCO1B1 (604843), SLCO1A2 (602883), IAPP (147940), PYROXD1 (617220), RECQL (600537), GOLT1B (615078), GYS2 (138571), LDHB (150100), KCNJ8 (600935), ABCC9 (601439), CMAS (603316), ST8SIA1 (601123), ETNK1 (609858), SOX5 (604975)	CytoRegions Not Set				false	arr[hg19] 12p12.2p12.1(20,978,137-24,149,417)x3-4	chr12:20978137-24149417
LST.OSCHP	3.33	Gain	7	q36.1	806.123	53	16	ACTR3C, LOC100134040, LRRC61, ZBED6CL, RARRES2, REPIN1, ZNF775, LOC728743, LINC00996, GIMAP8, GIMAP7, GIMAP4, GIMAP6, GIMAP2, GIMAP1, GIMAP1-GIMAP5	9	 (615171), ZBED6CL (615252), RARRES2 (601973), GIMAP8 (616962), GIMAP7 (616961), GIMAP4 (608087), GIMAP6 (616960), GIMAP2 (608085), GIMAP1 (608084)	CytoRegions Not Set				false	arr[hg19] 7q36.1(149,618,386-150,424,509)x3-4	chr7:149618386-150424509
LST.OSCHP	3.33	Gain	12	p13.33	347.535	23	6	ADIPOR2, CACNA2D4, LRTM2, LINC00940, DCP1B, CACNA1C-IT2	3	ADIPOR2 (607946), CACNA2D4 (608171), DCP1B (609843)	CytoRegions Not Set				false	arr[hg19] 12p13.33(1,814,026-2,161,561)x3-4	chr12:1814026-2161561
LST.OSCHP	3.33	Gain	6	p21.32	190.82	31	6	AGER, PBX2, GPSM3, NOTCH4, LOC101929163, C6orf10	3	AGER (600214), PBX2 (176311), NOTCH4 (164951)	CytoRegions Not Set				false	arr[hg19] 6p21.32(32,149,416-32,340,236)x3-4	chr6:32149416-32340236
LST.OSCHP	3.33	Gain	18	p11.21	288.951	19	5	ANKRD62, C18orf61, CIDEA, TUBB6, AFG3L2	3	CIDEA (604440), TUBB6 (615103), AFG3L2 (604581)	CytoRegions Not Set				false	arr[hg19] 18p11.21(12,074,999-12,363,950)x3-4	chr18:12074999-12363950
LST.OSCHP	3.33	Gain	22	q11.21	865.394	36	27	ARVCF, TANGO2, MIR185, DGCR8, MIR3618, MIR1306, TRMT2A, MIR6816, RANBP1, SNORA77B, ZDHHC8, CCDC188, LOC284865, LINC00896, RTN4R, MIR1286, DGCR6L, LOC101927859, FAM230A, GGTLC3, TMEM191B, PI4KAP1, RIMBP3, LINC01660, ZNF74, SCARF2, KLHL22	13	ARVCF (602269), TANGO2 (616830), MIR185 (615576), DGCR8 (609030), TRMT2A (611151), RANBP1 (601180), ZDHHC8 (608784), RTN4R (605566), DGCR6L (609459), GGTLC3 (612340), RIMBP3 (612699), ZNF74 (194548), SCARF2 (613619)	CytoRegions Not Set				false	arr[hg19] 22q11.21(19,969,695-20,835,089)x3-4	chr22:19969695-20835089
LST.OSCHP	3.33	Gain	6	p21.1	1872.095	154	50	BYSL, CCND3, TAF8, C6orf132, GUCA1A, GUCA1B, MRPS10, TRERF1, UBR2, PRPH2, ATP6V0CP3, TBCC, BICRAL, LOC401261, RPL7L1, C6orf226, PTCRA, CNPY3, CNPY3-GNMT, GNMT, PEX6, PPP2R5D, MEA1, KLHDC3, RRP36, CUL7, MRPL2, KLC4, PTK7, SRF, CUL9, DNPH1, TTBK1, SLC22A7, CRIP3, ZNF318, ABCC10, MIR6780B, DLK2, TJAP1, LRRC73, YIPF3, POLR1C, XPO5, POLH, GTPBP2, MAD2L1BP, RSPH9, MRPS18A, VEGFA	36	BYSL (603871), CCND3 (123834), TAF8 (609514), GUCA1A (600364), GUCA1B (602275), MRPS10 (611976), TRERF1 (610322), UBR2 (609134), PRPH2 (179605), TBCC (602971), RPL7L1 (617417), PTCRA (606817), CNPY3 (610774), GNMT (606628), PEX6 (601498), PPP2R5D (601646), MEA1 (143170), KLHDC3 (611248), RRP36 (613475), CUL7 (609577), MRPL2 (611822), PTK7 (601890), SRF (600589), CUL9 (607489), SLC22A7 (604995), ZNF318 (617512), ABCC10 (612509), TJAP1 (612658), YIPF3 (609775), POLR1C (610060), XPO5 (607845), POLH (603968), GTPBP2 (607434), RSPH9 (612648), MRPS18A (611981), VEGFA (192240)	CytoRegions Not Set				false	arr[hg19] 6p21.1(41,892,456-43,764,551)x3-4	chr6:41892456-43764551
LST.OSCHP	3.33	Gain	16	p12.1	2085.239	169	25	C16orf82, KDM8, NSMCE1, FLJ21408, IL4R, IL21R, IL21R-AS1, GTF3C1, KIAA0556, LOC100128079, GSG1L, XPO6, SBK1, NPIPB6, EIF3CL, EIF3C, MIR6862-1, MIR6862-2, CLN3, APOBR, IL27, NUPR1, SGF29, SULT1A2, SULT1A1	15	KDM8 (611917), NSMCE1 (617263), IL4R (147781), IL21R (605383), GTF3C1 (603246), KIAA0556 (616650), GSG1L (617161), XPO6 (608411), CLN3 (607042), APOBR (605220), IL27 (608273), NUPR1 (614812), SGF29 (613374), SULT1A2 (601292), SULT1A1 (171150)	CytoRegions Not Set				false	arr[hg19] 16p12.1p11.2(26,547,936-28,633,175)x3-4	chr16:26547936-28633175
LST.OSCHP	3.33	Gain	4	q35.1	391.105	27	5	C4orf47, CCDC110, LOC105377590, PDLIM3, SORBS2	3	CCDC110 (609488), PDLIM3 (605889), SORBS2 (616349)	CytoRegions Not Set				false	arr[hg19] 4q35.1(186,353,669-186,744,774)x3-4	chr4:186353669-186744774
LST.OSCHP	3.33	Gain	5	q33.3	264.041	18	9	CCNJL, C1QTNF2, ZBED8, SLU7, PTTG1, MIR3142HG, MIR3142, MIR146A, ATP10B	4	ZBED8 (615253), SLU7 (605974), PTTG1 (604147), MIR146A (610566)	CytoRegions Not Set				false	arr[hg19] 5q33.3q34(159,748,166-160,012,207)x3-4	chr5:159748166-160012207
LST.OSCHP	3.33	Gain	7	p11.2	1281.95	69	19	EGFR, EGFR-AS1, ELDR, LANCL2, VOPP1, FKBP9P1, SEPT14, ZNF713, MRPS17, NIPSNAP2, PSPH, CCT6A, SNORA22B, SNORA15, SUMF2, PHKG1, CHCHD2, NUPR2, LOC650226	12	EGFR (131550), LANCL2 (612919), VOPP1 (611915), SEPT14 (612140), ZNF713 (616181), MRPS17 (611980), NIPSNAP2 (603004), PSPH (172480), CCT6A (104613), SUMF2 (607940), PHKG1 (172470), CHCHD2 (616244)	CytoRegions Not Set				false	arr[hg19] 7p11.2(55,252,225-56,534,175)x3-4	chr7:55252225-56534175
LST.OSCHP	3.33	Gain	7	q11.23	307.824	42	7	ELN, LIMK1, EIF4H, MIR590, LAT2, RFC2, CLIP2	7	ELN (130160), LIMK1 (601329), EIF4H (603431), MIR590 (615070), LAT2 (605719), RFC2 (600404), CLIP2 (603432)	CytoRegions Not Set				false	arr[hg19] 7q11.23(73,423,845-73,731,669)x3-4	chr7:73423845-73731669
LST.OSCHP	3.33	Gain	9	q22.31	13883.1	1005	128	FAM120AOS, FAM120A, PHF2, MIR548AU, MIR4291, BARX1, BARX1-DT, PTPDC1, MIRLET7A1, MIRLET7F1, MIRLET7DHG, MIRLET7D, ZNF169, NUTM2F, LOC100132077, MFSD14B, PCAT7, FBP2, FBP1, C9orf3, MIR2278, LOC101928119, MIR6081, MIR23B, MIR27B, MIR3074, MIR24-1, FANCC, PTCH1, LOC100507346, LINC00476, ERCC6L2, LINC00092, LOC158435, LOC158434, HSD17B3, HSD17B3-AS1, SLC35D2, ZNF367, HABP4, CDC14B, AAED1, LOC441455, ZNF510, ZNF782, LOC100132781, LOC441454, NUTM2G, MFSD14C, CTSV, GAS2L1P2, ANKRD18CP, SUGT1P4-STRA6LP, SUGT1P4-STRA6LP-CCDC180, CCDC180, MIR1302-8, LOC286359, TDRD7, TMOD1, TSTD2, NCBP1, XPA, PTCSC2, FOXE1, TRMO, HEMGN, ANP32B, NANS, TRIM14, CORO2A, TBC1D2, MIR6854, GABBR2, ANKS6, GALNT12, COL15A1, TGFBR1, ALG2, SEC61B, NAMA, LOC101928438, NR4A3, STX17-AS1, STX17, ERP44, INVS, TEX10, MSANTD3, MSANTD3-TMEFF1, TMEFF1, CAVIN4, PLPPR1, BAAT, MRPL50, ZNF189, ALDOB, TMEM246-AS1, TMEM246, RNF20, GRIN3A, PPP3R2, LINC00587, CYLC2, LINC01492, LOC101928523, SMC2-AS1, SMC2, LOC105376194, OR13F1, OR13C4, OR13C3, OR13C8, OR13C5, OR13C2, OR13C9, OR13D1, NIPSNAP3A, NIPSNAP3B, ABCA1, SLC44A1, FSD1L, FKTN, TAL2, TMEM38B, MIR8081, LINC01505, ZNF462, LOC340512	63	FAM120A (612265), PHF2 (604351), BARX1 (603260), MIRLET7A1 (605386), MIRLET7F1 (612146), MIRLET7D (612145), ZNF169 (603404), FBP2 (603027), FBP1 (611570), MIR23B (610723), MIR27B (610636), MIR24-1 (609705), FANCC (613899), PTCH1 (601309), ERCC6L2 (615667), HSD17B3 (605573), SLC35D2 (609182), ZNF367 (610160), HABP4 (617369), CDC14B (603505), CTSV (603308), TDRD7 (611258), TMOD1 (190930), NCBP1 (600469), XPA (611153), FOXE1 (602617), HEMGN (610715), NANS (605202), TRIM14 (606556), CORO2A (602159), TBC1D2 (609871), GABBR2 (607340), ANKS6 (615370), GALNT12 (610290), COL15A1 (120325), TGFBR1 (190181), ALG2 (607905), SEC61B (609214), NR4A3 (600542), STX17 (604204), ERP44 (609170), INVS (243305), TEX10 (616717), TMEFF1 (603421), CAVIN4 (617714), BAAT (602938), MRPL50 (611854), ZNF189 (603132), ALDOB (612724), RNF20 (607699), GRIN3A (606650), PPP3R2 (613821), CYLC2 (604035), SMC2 (605576), NIPSNAP3A (608871), NIPSNAP3B (608872), ABCA1 (600046), SLC44A1 (606105), FSD1L (609829), FKTN (607440), TAL2 (186855), TMEM38B (611236), ZNF462 (617371)	CytoRegions Not Set				false	arr[hg19] 9q22.31q31.2(96,159,147-110,042,247)x3-4	chr9:96159147-110042247
LST.OSCHP	3.33	Gain	4	q32.1	963.051	66	5	FAM198B, FAM198B-AS1, TMEM144, RXFP1, C4orf46	2	RXFP1 (606654), C4orf46 (616210)	CytoRegions Not Set				false	arr[hg19] 4q32.1(158,625,843-159,588,894)x3-4	chr4:158625843-159588894
LST.OSCHP	3.33	Gain	9	p11.2	43639.763	1347	136	FAM27C, LOC105379807, LOC102723709, LOC107984035, FAM27E2, FAM242F, LOC102724238, LOC554249, FGF7P6, LINC01189, LOC103908605, LOC103908604, FAM74A4, FAM74A1, FAM74A6, SPATA31A5, SPATA31A7, LINC01410, LOC100132249, PTGER4P2-CDK2AP2P2, LOC403323, LOC728673, LOC101928381, LOC101929583, LOC101928195, LOC286297, AQP7P1, LOC102724580, BMS1P14, FAM27E3, FAM27B, ANKRD20A1, ANKRD20A3, LINC00537, MIR4477A, MIR4477B, FRG1JP, FRG1HP, LOC102725126, MIR1299, PGM5P2, LOC440896, FOXD4L6, CBWD6, CBWD5, ANKRD20A4-ANKRD20A20P, ANKRD20A4, LOC105379252, LOC100133920, FOXD4L5, FOXD4L4, CBWD3, FOXD4L3, PGM5-AS1, PGM5, TMEM252, LINC01506, PIP5K1B, FAM122A, LOC101927069, PRKACG, FXN, TJP2, BANCR, FAM189A2, APBA1, PTAR1, C9orf135-DT, C9orf135, MAMDC2, MAMDC2-AS1, SMC5-AS1, SMC5, KLF9, TRPM3, MIR204, CEMIP2, ABHD17B, C9orf85, C9orf57, GDA, LINC01504, ZFAND5, TMC1, LINC01474, ALDH1A1, ANXA1, LOC101927358, RORB-AS1, RORB, TRPM6, C9orf40, C9orf41-AS1, CARNMT1, NMRK1, OSTF1, MIR548H3, PCSK5, RFK, RPSAP9, GCNT1, PRUNE2, PCA3, FOXB2, VPS13A-AS1, VPS13A, GNA14, GNA14-AS1, GNAQ, CEP78, PSAT1, LOC101927450, TLE4, LINC01507, TLE1, LOC101927502, SPATA31D5P, SPATA31D4, SPATA31D3, SPATA31D1, RASEF, FRMD3, IDNK, UBQLN1, LOC105376114, GKAP1, KIF27, C9orf64, HNRNPK, MIR7-1, RMI1, LOC101927575, SLC28A3, NTRK2, AGTPBP1, LOC389765	52	CBWD3 (611080), FOXD4L3 (611086), PGM5 (600981), PIP5K1B (602745), FAM122A (617249), PRKACG (176893), FXN (606829), TJP2 (607709), FAM189A2 (607710), APBA1 (602414), MAMDC2 (612879), SMC5 (609386), KLF9 (602902), TRPM3 (608961), MIR204 (610942), CEMIP2 (605835), ABHD17B (617943), GDA (139260), ZFAND5 (604761), TMC1 (606706), ALDH1A1 (100640), ANXA1 (151690), RORB (601972), TRPM6 (607009), CARNMT1 (616552), NMRK1 (608704), OSTF1 (610180), PCSK5 (600488), RFK (613010), GCNT1 (600391), PRUNE2 (610691), PCA3 (604845), VPS13A (605978), GNA14 (604397), GNAQ (600998), CEP78 (617110), PSAT1 (610936), TLE4 (605132), TLE1 (600189), RASEF (611344), FRMD3 (607619), IDNK (611343), UBQLN1 (605046), GKAP1 (611356), KIF27 (611253), C9orf64 (611342), HNRNPK (600712), MIR7-1 (615239), RMI1 (610404), SLC28A3 (608269), NTRK2 (600456), AGTPBP1 (606830)	CytoRegions Not Set				false	arr[hg19] 9p11.2q21.33(44,893,093-88,532,856)x3-4	chr9:44893093-88532856
LST.OSCHP	3.33	Gain	18	q22.3	266.348	18	2	FBXO15, TIMM21	2	FBXO15 (609093), TIMM21 (615180)	CytoRegions Not Set				false	arr[hg19] 18q22.3(71,634,353-71,900,701)x3-4	chr18:71634353-71900701
LST.OSCHP	3.33	Gain	12	q22	3598.497	254	33	FGD6, VEZT, MIR331, MIR3685, METAP2, USP44, PGAM1P5, NTN4, LOC105369921, LINC02410, SNRPF, CCDC38, AMDHD1, HAL, LTA4H, ELK3, CDK17, CFAP54, NEDD1, RMST, MIR1251, MIR135A2, LOC643711, MIR4495, MIR4303, SLC9A7P1, LINC02453, TMPO-AS1, TMPO, SLC25A3, SNORA53, IKBIP, APAF1	15	FGD6 (613520), METAP2 (601870), USP44 (610993), NTN4 (610401), SNRPF (603541), HAL (609457), LTA4H (151570), ELK3 (600247), CDK17 (603440), NEDD1 (600372), RMST (607045), TMPO (188380), SLC25A3 (600370), IKBIP (609861), APAF1 (602233)	CytoRegions Not Set				false	arr[hg19] 12q22q23.1(95,473,184-99,071,681)x3-4	chr12:95473184-99071681
LST.OSCHP	3.33	Gain	4	p16.3	43.53	18	1	FGFR3	1	FGFR3 (134934)	CytoRegions Not Set				false	arr[hg19] 4p16.3(1,755,073-1,798,603)x3-4	chr4:1755073-1798603
LST.OSCHP	3.33	Gain	12	q13.2	38020.925	3161	287	GDF11, SARNP, ORMDL2, DNAJC14, TMEM198B, MMP19, PYM1, DGKA, PMEL, CDK2, RAB5B, SUOX, IKZF4, LOC105369781, RPS26, ERBB3, PA2G4, RPL41, ZC3H10, ESYT1, MYL6B, MYL6, SMARCC2, RNF41, NABP2, SLC39A5, ANKRD52, COQ10A, CS, CNPY2, PAN2, IL23A, STAT2, APOF, TIMELESS, MIP, SPRYD4, GLS2, SNORA105C, RBMS2, BAZ2A, ATP5F1B, SNORD59B, SNORD59A, PTGES3, NACA, PRIM1, HSD17B6, SDR9C7, RDH16, GPR182, ZBTB39, TAC3, MYO1A, NEMP1, NAB2, STAT6, LRP1, LRP1-AS, MIR1228, NXPH4, SHMT2, NDUFA4L2, STAC3, R3HDM2, INHBC, INHBE, GLI1, ARHGAP9, MARS, MIR6758, DDIT3, MIR616, MBD6, DCTN2, KIF5A, PIP4K2C, DTX3, ARHGEF25, LOC101927583, SLC26A10, B4GALNT1, OS9, AGAP2, AGAP2-AS1, TSPAN31, CDK4, MIR6759, MARCH9, CYP27B1, METTL1, EEF1AKMT3, TSFM, AVIL, CTDSP2, MIR26A2, LOC283387, LOC100506844, ATP23, LINC02403, LINC02388, LOC100506869, LRIG3, SLC16A7, FAM19A2, USP15, MIR6125, MON2, LINC01465, MIRLET7I, PPM1H, AVPR1A, DPY19L2, RXYLT1, RXYLT1-AS1, SRGAP1, C12orf66, C12orf56, XPOT, TBK1, RASSF3, MIR548Z, MIR548C, GNS, TBC1D30, LINC02389, LINC02231, WIF1, LEMD3, MSRB3, LOC100507065, LOC105369187, LINC02454, RPSAP52, HMGA2, LOC100129940, MIR6074, LINC02425, LLPH, LLPH-DT, TMBIM4, IRAK3, MIR6502, HELB, GRIP1, LOC102724421, CAND1, LINC02420, LINC02408, DYRK2, LINC02421, LINC01479, IFNG-AS1, IFNG, IL26, IL22, MDM1, LINC02384, RAP1B, SNORA70G, LOC100507250, NUP107, SLC35E3, LOC100130075, MDM2, CPM, CPSF6, MIR1279, LYZ, YEATS4, FRS2, SNORA113, MIR3913-1, MIR3913-2, CCT2, LRRC10, BEST3, RAB3IP, MYRFL, LINC01481, CNOT2, KCNMB4, PTPRB, PTPRR, TSPAN8, LGR5, ZFC3H1, THAP2, TMEM19, RAB21, TBC1D15, MRS2P2, TPH2, TRHDE-AS1, TRHDE, LINC02444, LOC100507377, ATXN7L3B, KCNC2, LOC100130268, CAPS2, GLIPR1L1, GLIPR1L2, GLIPR1, KRR1, PHLDA1, NAP1L1, LINC02407, BBS10, OSBPL8, ZDHHC17, CSRP2, E2F7, NAV3, LINC02424, SYT1, MIR1252, PAWR, PPP1R12A, PPP1R12A-AS1, OTOGL, PTPRQ, MYF6, MYF5, LINC01490, LIN7A, MIR617, MIR618, ACSS3, MIR4699, PPFIA2, PPFIA2-AS1, LINC02426, CCDC59, METTL25, TMTC2, SLC6A15, TSPAN19, LRRIQ1, ALX1, RASSF9, NTS, MGAT4C, LOC105369879, LINC02258, MKRN9P, C12orf50, C12orf29, CEP290, TMTC3, KITLG, LINC02458, DUSP6, POC1B, GALNT4, POC1B-GALNT4, POC1B-AS1, ATP2B1, ATP2B1-AS1, LINC02399, LINC02392, LINC00615, CCER1, EPYC, KERA, LUM, DCN, LINC01619, BTG1, LOC101928617, CLLU1OS, CLLU1, LINC02397, C12orf74, PLEKHG7, EEA1, LOC643339, LINC02412, NUDT4, NUDT4P2, NUDT4B, UBE2N, MRPL42, SOCS2-AS1, SOCS2, CRADD, LOC101928731	180	GDF11 (603936), SARNP (610049), ORMDL2 (610074), DNAJC14 (606092), MMP19 (601807), DGKA (125855), PMEL (155550), CDK2 (116953), RAB5B (179514), SUOX (606887), IKZF4 (606239), RPS26 (603701), ERBB3 (190151), PA2G4 (602145), RPL41 (613315), ESYT1 (616670), MYL6B (609930), MYL6 (609931), SMARCC2 (601734), NABP2 (612104), SLC39A5 (608730), CS (118950), CNPY2 (605861), PAN2 (617447), IL23A (605580), STAT2 (600556), APOF (107760), TIMELESS (603887), MIP (154050), GLS2 (606365), RBMS2 (602387), BAZ2A (605682), ATP5F1B (102910), PTGES3 (607061), NACA (601234), PRIM1 (176635), HSD17B6 (606623), SDR9C7 (609769), GPR182 (605307), TAC3 (162330), MYO1A (601478), NEMP1 (616496), NAB2 (602381), STAT6 (601512), LRP1 (107770), NXPH4 (604637), SHMT2 (138450), STAC3 (615521), INHBC (601233), INHBE (612031), GLI1 (165220), ARHGAP9 (610576), MARS (156560), DDIT3 (126337), MIR616 (614489), DCTN2 (607376), KIF5A (602821), PIP4K2C (617104), DTX3 (613142), ARHGEF25 (610215), B4GALNT1 (601873), OS9 (609677), AGAP2 (605476), TSPAN31 (181035), CDK4 (123829), MARCH9 (613336), CYP27B1 (609506), METTL1 (604466), EEF1AKMT3 (615258), TSFM (604723), AVIL (613397), CTDSP2 (608711), MIR26A2 (613057), LRIG3 (608870), SLC16A7 (603654), FAM19A2 (617496), USP15 (604731), MON2 (616822), MIRLET7I (612148), PPM1H (616016), AVPR1A (600821), DPY19L2 (613893), RXYLT1 (605862), SRGAP1 (606523), C12orf66 (617420), XPOT (603180), TBK1 (604834), RASSF3 (607019), GNS (607664), TBC1D30 (615077), WIF1 (605186), LEMD3 (607844), MSRB3 (613719), HMGA2 (600698), LLPH (616998), TMBIM4 (616874), IRAK3 (604459), HELB (614539), GRIP1 (604597), CAND1 (607727), DYRK2 (603496), IFNG (147570), IL26 (605679), IL22 (605330), MDM1 (613813), RAP1B (179530), NUP107 (607617), MDM2 (164785), CPM (114860), CPSF6 (604979), LYZ (153450), YEATS4 (602116), FRS2 (607743), CCT2 (605139), LRRC10 (610846), BEST3 (607337), RAB3IP (608686), CNOT2 (604909), KCNMB4 (605223), PTPRB (176882), PTPRR (602853), TSPAN8 (600769), LGR5 (606667), THAP2 (612531), RAB21 (612398), TBC1D15 (612662), TPH2 (607478), TRHDE (606950), ATXN7L3B (615579), KCNC2 (176256), CAPS2 (607724), GLIPR1L1 (610395), GLIPR1L2 (610394), GLIPR1 (602692), KRR1 (612817), PHLDA1 (605335), NAP1L1 (164060), BBS10 (610148), OSBPL8 (606736), ZDHHC17 (607799), CSRP2 (601871), E2F7 (612046), NAV3 (611629), SYT1 (185605), PAWR (601936), PPP1R12A (602021), OTOGL (614925), PTPRQ (603317), MYF6 (159991), MYF5 (159990), LIN7A (603380), ACSS3 (614356), PPFIA2 (603143), TMTC2 (615856), SLC6A15 (607971), ALX1 (601527), RASSF9 (610383), NTS (162650), MGAT4C (607385), CEP290 (610142), TMTC3 (617218), KITLG (184745), DUSP6 (602748), POC1B (614784), GALNT4 (603565), ATP2B1 (108731), EPYC (601657), KERA (603288), LUM (600616), DCN (125255), BTG1 (109580), CLLU1OS (616989), CLLU1 (616988), EEA1 (605070), NUDT4 (609229), UBE2N (603679), MRPL42 (611847), SOCS2-AS1 (617269), SOCS2 (605117), CRADD (603454)	CytoRegions Not Set				false	arr[hg19] 12q13.2q22(56,140,026-94,160,951)x3-4	chr12:56140026-94160951
LST.OSCHP	3.33	Gain	7	q11.23	2092.461	133	41	GTF2IRD1, GTF2I, LOC101926943, NCF1, GTF2IRD2, STAG3L2, PMS2P5, RCC1L, GTF2IRD2B, NCF1C, GTF2IP4, GTF2IP1, SPDYE10P, SPDYE17, SPDYE13P, SPDYE15P, SPDYE14P, SPDYE11, CASTOR2, SPDYE8P, PMS2P7, STAG3L1, TRIM73, NSUN5P1, POM121C, SPDYE5, PMS2P3, HIP1, CCL26, CCL24, RHBDD2, POR, MIR4651, SNORA14A, TMEM120A, STYXL1, MDH2, GTF2IP7, SRRM3, HSPB1, YWHAG	18	GTF2IRD1 (604318), GTF2I (601679), NCF1 (608512), GTF2IRD2 (608899), GTF2IRD2B (608900), CASTOR2 (617033), TRIM73 (612549), POM121C (615754), HIP1 (601767), CCL26 (604697), CCL24 (602495), RHBDD2 (615203), POR (124015), TMEM120A (616550), STYXL1 (616695), MDH2 (154100), HSPB1 (602195), YWHAG (605356)	CytoRegions Not Set				false	arr[hg19] 7q11.23(73,865,183-75,957,644)x3-4	chr7:73865183-75957644
LST.OSCHP	3.33	Gain	6	p21.33	195.326	38	9	HLA-B, MIR6891, MICA-AS1, MICA, LINC01149, HCP5, HCG26, MICB-DT, MICB	4	HLA-B (142830), MICA (600169), HCP5 (604676), MICB (602436)	CytoRegions Not Set				false	arr[hg19] 6p21.33(31,300,044-31,495,370)x3-4	chr6:31300044-31495370
LST.OSCHP	3.33	Gain	6	p21.32	380.77	26	27	HLA-DPB2, HCG24, COL11A2, RXRB, SLC39A7, HSD17B8, MIR219A1, RING1, HCG25, VPS52, RPS18, B3GALT4, WDR46, MIR6873, PFDN6, MIR6834, RGL2, TAPBP, ZBTB22, MIR1234, DAXX, KIFC1, PHF1, CUTA, SYNGAP1, MIR5004, ZBTB9	19	COL11A2 (120290), RXRB (180246), SLC39A7 (601416), HSD17B8 (601417), MIR219A1 (611500), RING1 (602045), VPS52 (603443), RPS18 (180473), B3GALT4 (603095), WDR46 (611440), PFDN6 (605660), RGL2 (602306), TAPBP (601962), ZBTB22 (611439), DAXX (603186), KIFC1 (603763), PHF1 (602881), CUTA (616953), SYNGAP1 (603384)	CytoRegions Not Set				false	arr[hg19] 6p21.32(33,079,132-33,459,902)x3-4	chr6:33079132-33459902
LST.OSCHP	3.33	Gain	11	p15.5	767.471	68	20	IGF2, INS-IGF2, IGF2-AS, INS, TH, MIR4686, ASCL2, C11orf21, TSPAN32, CD81-AS1, CD81, TSSC4, TRPM5, KCNQ1, KCNQ1OT1, KCNQ1-AS1, KCNQ1DN, CDKN1C, SLC22A18AS, SLC22A18	16	IGF2 (147470), IGF2-AS (610146), INS (176730), TH (191290), ASCL2 (601886), C11orf21 (611033), TSPAN32 (603853), CD81 (186845), TSSC4 (603852), TRPM5 (604600), KCNQ1 (607542), KCNQ1OT1 (604115), KCNQ1DN (610980), CDKN1C (600856), SLC22A18AS (603240), SLC22A18 (602631)	CytoRegions Not Set				false	arr[hg19] 11p15.5p15.4(2,169,013-2,936,484)x3-4	chr11:2169013-2936484
LST.OSCHP	3.33	Gain	4	q12	283.129	35	2	LINC02260, KIT	1	KIT (164920)	CytoRegions Not Set				false	arr[hg19] 4q12(55,274,855-55,557,984)x3-4	chr4:55274855-55557984
LST.OSCHP	3.33	Gain	4	p15.33	322.97	19	1	LINC02360	0		CytoRegions Not Set				false	arr[hg19] 4p15.33(11,695,023-12,017,993)x3-4	chr4:11695023-12017993
LST.OSCHP	3.33	Gain	10	p15.2	323.862	22	2	LOC105376360, LOC101927880	0		CytoRegions Not Set				false	arr[hg19] 10p15.2(3,252,532-3,576,394)x3-4	chr10:3252532-3576394
LST.OSCHP	3.33	Gain	7	p22.3	131.01	21	1	LOC442497	0		CytoRegions Not Set				false	arr[hg19] 7p22.3(400,449-531,459)x3-4	chr7:400449-531459
LST.OSCHP	3.33	Gain	10	q22.3	923.21	57	23	LOC729815, EIF5AL1, SFTPA2, SFTPA1, LOC105378385, BEND3P3, NUTM2B-AS1, NUTM2B, LOC642361, NUTM2E, BMS1P21, MBL1P, SFTPD, TMEM254-AS1, TMEM254, PLAC9, ANXA11, LINC00857, LOC100130698, MAT1A, DYDC1, DYDC2, FAM213A	8	SFTPA2 (178642), SFTPA1 (178630), SFTPD (178635), PLAC9 (612857), ANXA11 (602572), MAT1A (610550), DYDC1 (615154), FAM213A (617165)	CytoRegions Not Set				false	arr[hg19] 10q22.3q23.1(81,248,315-82,171,525)x3-4	chr10:81248315-82171525
LST.OSCHP	3.33	Gain	11	q13.1	1972.628	151	92	MALAT1, TALAM1, MASCRNA, SCYL1, LTBP3, SSSCA1-AS1, SSSCA1, FAM89B, EHBP1L1, KCNK7, MAP3K11, PCNX3, MIR4690, SIPA1, MIR4489, RELA, KAT5, RNASEH2C, AP5B1, MIR1234, OVOL1, OVOL1-AS1, SNX32, CFL1, MUS81, EFEMP2, CTSW, FIBP, CCDC85B, FOSL1, C11orf68, DRAP1, TSGA10IP, SART1, EIF1AD, BANF1, CST6, CATSPER1, GAL3ST3, SF3B2, SNORD13F, PACS1, KLC2, RAB1B, CNIH2, YIF1A, TMEM151A, CD248, RIN1, BRMS1, B4GAT1, LOC102724064, SLC29A2, NPAS4, MRPL11, PELI3, LOC101928069, DPP3, BBS1, ZDHHC24, ACTN3, CTSF, CCDC87, CCS, RBM14, RBM14-RBM4, RBM4, RBM4B, SPTBN2, C11orf80, RCE1, PC, LRFN4, MIR3163, C11orf86, SYT12, MIR6860, RHOD, KDM2A, GRK2, ANKRD13D, SSH3, LOC100130987, POLD4, CLCF1, RAD9A, PPP1CA, TBC1D10C, CARNS1, RPS6KB2, PTPRCAP, CORO1B	68	MALAT1 (607924), SCYL1 (607982), LTBP3 (602090), SSSCA1 (606044), FAM89B (616128), KCNK7 (603940), MAP3K11 (600050), PCNX3 (617657), SIPA1 (602180), RELA (164014), KAT5 (601409), RNASEH2C (610330), AP5B1 (614367), OVOL1 (602313), CFL1 (601442), MUS81 (606591), EFEMP2 (604633), CTSW (602364), FIBP (608296), CCDC85B (605360), FOSL1 (136515), DRAP1 (602289), SART1 (605941), BANF1 (603811), CST6 (601891), CATSPER1 (606389), GAL3ST3 (608234), SF3B2 (605591), PACS1 (607492), KLC2 (611729), RAB1B (612565), CNIH2 (611288), YIF1A (611484), CD248 (606064), RIN1 (605965), BRMS1 (606259), B4GAT1 (605517), SLC29A2 (602110), NPAS4 (608554), MRPL11 (611826), PELI3 (609827), DPP3 (606818), BBS1 (209901), ACTN3 (102574), CTSF (603539), CCS (603864), RBM14 (612409), RBM4 (602571), SPTBN2 (604985), C11orf80 (616109), RCE1 (605385), PC (608786), LRFN4 (612810), SYT12 (606436), RHOD (605781), KDM2A (605657), GRK2 (109635), ANKRD13D (615126), SSH3 (606780), POLD4 (611525), CLCF1 (607672), RAD9A (603761), PPP1CA (176875), TBC1D10C (610831), CARNS1 (613368), RPS6KB2 (608939), PTPRCAP (601577), CORO1B (609849)	CytoRegions Not Set				false	arr[hg19] 11q13.1q13.2(65,233,350-67,205,978)x3-4	chr11:65233350-67205978
LST.OSCHP	3.33	Gain	11	p15.5	1309.133	87	53	MIR210HG, MIR210, LOC143666, PHRF1, IRF7, CDHR5, SCT, DRD4, DEAF1, TMEM80, EPS8L2, TALDO1, GATD1, LOC171391, CEND1, SLC25A22, PANO1, PIDD1, RPLP2, SNORA52, PNPLA2, CRACR2B, CD151, POLR2L, TSPAN4, CHID1, AP2A2, MUC6, LOC101927503, MUC2, MUC5AC, MUC5B, MUC5B-AS1, MIR6744, TOLLIP, TOLLIP-AS1, BRSK2, MOB2, DUSP8, KRTAP5-AS1, KRTAP5-1, KRTAP5-2, KRTAP5-3, KRTAP5-4, KRTAP5-5, FAM99A, FAM99B, KRTAP5-6, IFITM10, CTSD, SYT8, TNNI2, LSP1	33	MIR210 (612982), PHRF1 (611780), IRF7 (605047), CDHR5 (606839), SCT (182099), DRD4 (126452), DEAF1 (602635), EPS8L2 (614988), TALDO1 (602063), CEND1 (608213), SLC25A22 (609302), PIDD1 (605247), RPLP2 (180530), PNPLA2 (609059), CRACR2B (614177), CD151 (602243), POLR2L (601189), TSPAN4 (602644), CHID1 (615692), AP2A2 (607242), MUC6 (158374), MUC2 (158370), MUC5AC (158373), MUC5B (600770), TOLLIP (606277), BRSK2 (609236), MOB2 (611969), DUSP8 (602038), KRTAP5-1 (148022), CTSD (116840), SYT8 (607719), TNNI2 (191043), LSP1 (153432)	CytoRegions Not Set				false	arr[hg19] 11p15.5(565,088-1,874,221)x3-4	chr11:565088-1874221
LST.OSCHP	3.33	Gain	4	p15.2	221.64	28	2	MIR573, DHX15	1	DHX15 (603403)	CytoRegions Not Set				false	arr[hg19] 4p15.2(24,494,301-24,715,941)x3-4	chr4:24494301-24715941
LST.OSCHP	3.33	Gain	7	q36.3	717.069	55	5	NCAPG2, ESYT2, WDR60, LINC00689, VIPR2	4	NCAPG2 (608532), ESYT2 (616691), WDR60 (615462), VIPR2 (601970)	CytoRegions Not Set				false	arr[hg19] 7q36.3(158,401,374-159,118,443)x3-4	chr7:158401374-159118443
LST.OSCHP	3.33	Gain	22	q12.2	391.942	27	9	OSBP2, LOC107985544, MORC2-AS1, MORC2, TUG1, SMTN, SELENOM, INPP5J, PLA2G3	7	OSBP2 (606729), MORC2 (616661), TUG1 (614971), SMTN (602127), SELENOM (610918), INPP5J (606481), PLA2G3 (611651)	CytoRegions Not Set				false	arr[hg19] 22q12.2(31,151,318-31,543,260)x3-4	chr22:31151318-31543260
LST.OSCHP	3.33	Gain	6	p21.2	519.775	53	10	PANDAR, CDKN1A, DINOL, RAB44, CPNE5, PPIL1, C6orf89, PI16, MTCH1, FGD2	7	PANDAR (617179), CDKN1A (116899), CPNE5 (604209), PPIL1 (601301), C6orf89 (616642), MTCH1 (610449), FGD2 (605091)	CytoRegions Not Set				false	arr[hg19] 6p21.2(36,617,651-37,137,426)x3-4	chr6:36617651-37137426
LST.OSCHP	3.33	Gain	4	p16.3	3166.676	186	41	POLN, HAUS3, MXD4, MIR4800, ZFYVE28, CFAP99, RNF4, FAM193A, TNIP2, SH3BP2, ADD1, MFSD10, NOP14-AS1, NOP14, GRK4, HTT-AS, HTT, MSANTD1, RGS12, HGFAC, DOK7, LRPAP1, LINC00955, LINC02171, ADRA2C, FAM86EP, OTOP1, TMEM128, LYAR, ZBTB49, NSG1, STX18, STX18-IT1, STX18-AS1, SNORD162, LOC101928279, LINC01396, MSX1, LOC101928306, CYTL1, STK32B	23	POLN (610887), HAUS3 (613430), ZFYVE28 (614176), RNF4 (602850), TNIP2 (610669), SH3BP2 (602104), ADD1 (102680), MFSD10 (610977), NOP14 (611526), GRK4 (137026), HTT (613004), RGS12 (602512), HGFAC (604552), DOK7 (610285), LRPAP1 (104225), ADRA2C (104250), OTOP1 (607806), LYAR (617684), ZBTB49 (616238), NSG1 (607645), STX18 (606046), MSX1 (142983), CYTL1 (607930)	CytoRegions Not Set				false	arr[hg19] 4p16.3p16.2(2,234,650-5,401,326)x3-4	chr4:2234650-5401326
LST.OSCHP	3.33	Gain	22	q11.22	2032.357	233	43	PPM1F, LOC100286925, TOP3B, PRAMENP, VPREB1, BMS1P20, ZNF280B, ZNF280A, PRAME, LL22NC03-63E9.3, POM121L1P, GGTLC2, MIR650, MIR5571, IGLL5, RSPH14, GNAZ, RAB36, BCR, FBXW4P1, LINC02556, CES5AP1, ZDHHC8P1, LINC01659, LINC01658, IGLL1, DRICH1, GUSBP11, RGL4, ZNF70, VPREB3, C22orf15, CHCHD10, MMP11, SMARCB1, DERL3, SLC2A11, MIF-AS1, MIF, GSTT2B, GSTT2, DDTL, DDT	20	TOP3B (603582), VPREB1 (605141), PRAME (606021), GGTLC2 (612339), MIR650 (615379), RSPH14 (605663), GNAZ (139160), RAB36 (605662), BCR (151410), IGLL1 (146770), RGL4 (612214), ZNF70 (194544), VPREB3 (605017), CHCHD10 (615903), MMP11 (185261), SMARCB1 (601607), DERL3 (610305), SLC2A11 (610367), MIF (153620), DDT (602750)	CytoRegions Not Set				false	arr[hg19] 22q11.22q11.23(22,281,901-24,314,258)x3-4	chr22:22281901-24314258
LST.OSCHP	3.33	Gain	7	p22.1	243.077	19	6	RADIL, MMD2, RNF216P1, RBAK, RBAK-RBAKDN, RBAKDN	3	RADIL (611491), MMD2 (614581), RBAK (608191)	CytoRegions Not Set				false	arr[hg19] 7p22.1(4,914,357-5,157,434)x3-4	chr7:4914357-5157434
LST.OSCHP	3.33	Gain	5	q14.3	885.177	60	4	RASA1, CCNH, LINC02488, TMEM161B	2	RASA1 (139150), CCNH (601953)	CytoRegions Not Set				false	arr[hg19] 5q14.3(86,627,137-87,512,314)x3-4	chr5:86627137-87512314
LST.OSCHP	3.33	Gain	4	q21.1	529.731	46	10	RCHY1, THAP6, ODAPH, CDKL2, G3BP2, USO1, PPEF2, NAAA, SDAD1, LOC101928809	7	RCHY1 (607680), THAP6 (612535), ODAPH (614829), CDKL2 (603442), USO1 (603344), PPEF2 (602256), NAAA (607469)	CytoRegions Not Set				false	arr[hg19] 4q21.1(76,391,078-76,920,809)x3-4	chr4:76391078-76920809
LST.OSCHP	3.33	Gain	1	q43	194.121	21	2	RGS7, FH	2	RGS7 (602517), FH (136850)	CytoRegions Not Set				false	arr[hg19] 1q43(241,470,210-241,664,331)x3-4	chr1:241470210-241664331
LST.OSCHP	3.33	Gain	1	p13.2	591.381	48	5	SIKE1, SYCP1, TSHB, TSPAN2, NGF	5	SIKE1 (611656), SYCP1 (602162), TSHB (188540), TSPAN2 (613133), NGF (162030)	CytoRegions Not Set				false	arr[hg19] 1p13.2(115,302,878-115,894,259)x3-4	chr1:115302878-115894259
LST.OSCHP	3.33	Gain	5	p15.33	42007.796	2908	215	SLC6A3, LPCAT1, MIR6075, SDHAP3, LOC728613, MIR4277, MRPL36, NDUFS6, LINC02116, IRX4, CTD-2194D22.4, LOC100506858, LSINCT5, IRX2, C5orf38, LOC105374620, LINC01377, LINC01019, LINC02162, LINC01017, IRX1, LINC02114, LINC01020, LINC02121, CTD-2297D10.2, ADAMTS16, ICE1, LINC02145, MED10, UBE2QL1, LINC01018, NSUN2, SRD5A1, LINC02102, TENT4A, LINC02236, MIR4278, MIR4454, LOC442132, LINC02123, ADCY2, C5orf49, FASTKD3, MTRR, LINC02226, MIR4458HG, MIR4458, LINC02199, SEMA5A, MIR4636, SEMA5A-AS1, SNHG18, SNORD123, TAS2R1, LINC02112, LINC02221, FAM173B, CCT5, CMBL, MARCH6, ROPN1L-AS1, ROPN1L, MIR6131, LINC02212, LINC02213, ANKRD33B, DAP, CTNND2, LINC01194, LINC02220, DNAH5, TRIO, SNORD170, OTULINL, SNORD141B, SNORD141A, OTULIN, ANKH, LOC100130744, MIR4637, LINC02149, FBXL7, CTD-2350J17.1, MIR887, MARCH11, LOC401176, LINC02150, ZNF622, RETREG1, LOC101929524, MYO10, BASP1-AS1, BASP1, LINC02111, LINC02217, LINC02218, H3.Y, LINC02223, CDH18, CDH18-AS1, LINC02241, LINC02146, GUSBP1, CDH12, SNORA105A, SNORA105B, PMCHL1, PRDM9, C5orf17, CDH10, LINC02239, LINC02228, LINC02211, CDH9, PURPL, LINC02103, LSP1P3, LOC101929645, LINC02109, LINC02064, LOC105374704, CDH6, DROSHA, C5orf22, PDZD2, MIR4279, GOLPH3, MTMR12, ZFR, MIR579, SUB1, NPR3, LINC02120, LINC02160, TARS, ADAMTS12, RXFP3, SLC45A2, AMACR, C1QTNF3-AMACR, C1QTNF3, RAI14, TTC23L, RAD1, BRIX1, DNAJC21, AGXT2, PRLR, SPEF2, IL7R, CAPSL, LOC100506406, UGT3A1, UGT3A2, LMBRD2, MIR580, SKP2, NADK2, RANBP3L, SLC1A3, NIPBL-DT, NIPBL, CPLANE1, LOC105374727, NUP155, WDR70, GDNF, GDNF-AS1, LINC02110, LINC02107, LINC02119, EGFLAM, EGFLAM-AS4, EGFLAM-AS2, LIFR, LIFR-AS1, MIR3650, OSMR-AS1, LINC01265, OSMR, RICTOR, FYB1, C9, DAB2, LINC02104, LINC00603, PTGER4, TTC33, PRKAA1, LOC100506548, RPL37, SNORD72, CARD6, C7, MROH2B, C6, PLCXD3, OXCT1, OXCT1-AS1, C5orf51, FBXO4, LOC101926960, GHR, CCDC152, SELENOP, FLJ32255, LOC648987, ANXA2R, LOC153684, LOC100132356, LOC100506639, ZNF131, NIM1K, HMGCS1, CCL28	100	SLC6A3 (126455), LPCAT1 (610472), MRPL36 (611842), NDUFS6 (603848), IRX4 (606199), LSINCT5 (615764), IRX2 (606198), C5orf38 (610522), IRX1 (606197), ADAMTS16 (607510), ICE1 (617958), MED10 (612382), UBE2QL1 (615832), LINC01018 (616385), NSUN2 (610916), SRD5A1 (184753), TENT4A (605198), ADCY2 (103071), FASTKD3 (617530), MTRR (602568), SEMA5A (609297), TAS2R1 (604796), CCT5 (610150), CMBL (613379), MARCH6 (613297), ROPN1L (611756), DAP (600954), CTNND2 (604275), LINC01194 (617097), DNAH5 (603335), TRIO (601893), OTULIN (615712), ANKH (605145), FBXL7 (605656), MARCH11 (613338), ZNF622 (608694), RETREG1 (613114), MYO10 (601481), BASP1 (605940), CDH18 (603019), CDH12 (600562), PMCHL1 (176793), PRDM9 (609760), CDH10 (604555), CDH9 (609974), CDH6 (603007), DROSHA (608828), PDZD2 (610697), GOLPH3 (612207), MTMR12 (606501), ZFR (615635), SUB1 (600503), NPR3 (108962), TARS (187790), ADAMTS12 (606184), RXFP3 (609445), SLC45A2 (606202), AMACR (604489), C1QTNF3 (612045), RAI14 (606586), TTC23L (616344), RAD1 (603153), DNAJC21 (617048), AGXT2 (612471), PRLR (176761), SPEF2 (610172), IL7R (146661), UGT3A1 (616383), UGT3A2 (616384), SKP2 (601436), NADK2 (615787), RANBP3L (616391), SLC1A3 (600111), NIPBL (608667), CPLANE1 (614571), NUP155 (606694), WDR70 (617233), GDNF (600837), EGFLAM (617683), LIFR (151443), OSMR (601743), RICTOR (609022), FYB1 (602731), C9 (120940), DAB2 (601236), PTGER4 (601586), PRKAA1 (602739), RPL37 (604181), CARD6 (609986), C7 (217070), C6 (217050), PLCXD3 (617016), OXCT1 (601424), FBXO4 (609090), GHR (600946), SELENOP (601484), ANXA2R (611296), ZNF131 (604073), HMGCS1 (142940), CCL28 (605240)	CytoRegions Not Set				false	arr[hg19] 5p15.33p12(1,391,368-43,399,164)x3-4	chr5:1391368-43399164
LST.OSCHP	3.33	Gain	16	p13.3	69.834	28	6	SLC9A3R2, NTHL1, TSC2, PKD1, MIR1225, LOC105371049	5	SLC9A3R2 (606553), NTHL1 (602656), TSC2 (191092), PKD1 (601313), MIR1225 (611621)	CytoRegions Not Set				false	arr[hg19] 16p13.3(2,074,465-2,144,299)x3-4	chr16:2074465-2144299
LST.OSCHP	3.33	Gain	1	q22	1543.217	230	47	SSR2, UBQLN4, LAMTOR2, RAB25, MEX3A, LMNA, SEMA4A, SLC25A44, PMF1, PMF1-BGLAP, BGLAP, PAQR6, SMG5, TMEM79, GLMP, VHLL, CCT3, TSACC, RHBG, C1orf61, MIR9-1, MEF2D, IQGAP3, TTC24, NAXE, GPATCH4, LOC101928177, HAPLN2, BCAN, NES, CRABP2, ISG20L2, RRNAD1, MRPL24, HDGF, PRCC, SH2D2A, NTRK1, INSRR, PEAR1, LRRC71, ARHGEF11, MIR765, ETV3L, ETV3, CYCSP52, FCRL5	32	SSR2 (600867), UBQLN4 (605440), LAMTOR2 (610389), RAB25 (612942), MEX3A (611007), LMNA (150330), SEMA4A (607292), SLC25A44 (610824), PMF1 (609176), BGLAP (112260), PAQR6 (614579), SMG5 (610962), TMEM79 (615531), CCT3 (600114), RHBG (607079), MIR9-1 (611186), MEF2D (600663), NAXE (608862), BCAN (600347), NES (600915), CRABP2 (180231), ISG20L2 (611930), MRPL24 (611836), HDGF (600339), PRCC (179755), SH2D2A (604514), NTRK1 (191315), INSRR (147671), PEAR1 (610278), ARHGEF11 (605708), ETV3 (164873), FCRL5 (605877)	CytoRegions Not Set				false	arr[hg19] 1q22q23.1(155,984,801-157,528,018)x3-4	chr1:155984801-157528018
LST.OSCHP	3.33	Gain	1	p33	101.182	18	2	STIL, CMPK1	2	STIL (181590), CMPK1 (191710)	CytoRegions Not Set				false	arr[hg19] 1p33(47,719,010-47,820,192)x3-4	chr1:47719010-47820192
LST.OSCHP	3.33	Gain	9	q31.3	4515.631	308	51	TMEM245, FRRS1L, EPB41L4B, PTPN3, MIR3927, PALM2, PALM2-AKAP2, AKAP2, C9orf152, TXN, TXNDC8, SVEP1, MUSK, LPAR1, MIR7702, OR2K2, ECPAS, ZNF483, PTGR1, LRRC37A5P, DNAJC25, DNAJC25-GNG10, GNG10, C9orf84, UGCG, MIR4668, SUSD1, PTBP3, HSDL2, C9orf147, KIAA1958, INIP, SNX30, SLC46A2, ZNF883, ZFP37, FAM225B, FAM225A, SLC31A2, FKBP15, SLC31A1, CDC26, PRPF4, RNF183, WDR31, BSPRY, HDHD3, ALAD, POLE3, C9orf43, RGS3	26	FRRS1L (604574), EPB41L4B (610340), PTPN3 (176877), AKAP2 (604582), TXN (187700), TXNDC8 (617789), SVEP1 (611691), MUSK (601296), LPAR1 (602282), ECPAS (616694), PTGR1 (601274), GNG10 (604389), UGCG (602874), PTBP3 (607527), KIAA1958 (617390), INIP (613273), SLC46A2 (608956), ZFP37 (602951), SLC31A2 (603088), FKBP15 (617398), SLC31A1 (603085), CDC26 (614533), PRPF4 (607795), ALAD (125270), POLE3 (607267), RGS3 (602189)	CytoRegions Not Set				false	arr[hg19] 9q31.3q32(111,815,339-116,330,970)x3-4	chr9:111815339-116330970
LST.OSCHP	3.33	Gain	12	q23.3	12185.126	928	131	TXNRD1, CHST11, MIR3922, SLC41A2, C12orf45, ALDH1L2, LOC414300, WASHC4, APPL2, KCCAT198, C12orf75, CASC18, NUAK1, CKAP4, TCP11L2, POLR3B, LOC100287944, RFX4, LOC100505978, RIC8B, TMEM263, MTERF2, CRY1, BTBD11, PWP1, PRDM4, LOC101929162, ASCL4, LOC728739, WSCD2, CMKLR1, LINC01498, FICD, SART3, ISCU, TMEM119, SELPLG, MIR4496, CORO1C, SSH1, MIR619, DAO, SVOP, USP30, USP30-AS1, ALKBH2, UNG, ACACB, FOXN4, LINC01486, MYO1H, KCTD10, UBE3B, MMAB, MVK, FAM222A, FAM222A-AS1, TRPV4, MIR4497, GLTP, TCHP, GIT2, ANKRD13A, C12orf76, IFT81, ATP2A2, ANAPC7, ARPC3, GPN3, FAM216A, VPS29, RAD9B, PPTC7, TCTN1, HVCN1, PPP1CC, CCDC63, MYL2, LINC01405, LOC105369980, CUX2, MIR6760, PHETA1, SH2B3, ATXN2, ATXN2-AS, BRAP, ACAD10, ALDH2, MIR6761, MAPKAPK5-AS1, MAPKAPK5, ADAM1A, TMEM116, ERP29, NAA25, MIR3657, TRAFD1, HECTD4, MIR6861, RPL6, PTPN11, RPH3A, MIR1302-1, OAS1, OAS3, OAS2, DTX1, RASAL1, CFAP73, DDX54, MIR7106, RITA1, IQCD, TPCN1, MIR6762, SLC8B1, PLBD2, SDS, SDSL, LHX5, LHX5-AS1, LINC01234, RBM19, LINC02459, TBX5, TBX5-AS1, TBX3, MED13L, MIR620, MIR4472-2	77	TXNRD1 (601112), CHST11 (610128), SLC41A2 (610802), ALDH1L2 (613584), WASHC4 (615748), APPL2 (606231), NUAK1 (608130), POLR3B (614366), RFX4 (603958), RIC8B (609147), MTERF2 (616929), CRY1 (601933), PRDM4 (605780), ASCL4 (609155), CMKLR1 (602351), SART3 (611684), ISCU (611911), SELPLG (600738), CORO1C (605269), SSH1 (606778), DAO (124050), SVOP (611699), USP30 (612492), ALKBH2 (610602), UNG (191525), ACACB (601557), FOXN4 (609429), MYO1H (614636), KCTD10 (613421), UBE3B (608047), MMAB (607568), MVK (251170), TRPV4 (605427), GLTP (608949), TCHP (612654), GIT2 (608564), ANKRD13A (615123), IFT81 (605489), ATP2A2 (108740), ANAPC7 (606949), ARPC3 (604225), VPS29 (606932), RAD9B (608368), PPTC7 (609668), TCTN1 (609863), HVCN1 (611227), PPP1CC (176914), CCDC63 (617969), MYL2 (160781), CUX2 (610648), PHETA1 (614239), SH2B3 (605093), ATXN2 (601517), BRAP (604986), ACAD10 (611181), ALDH2 (100650), MAPKAPK5 (606723), ERP29 (602287), NAA25 (612755), TRAFD1 (613197), RPL6 (603703), PTPN11 (176876), RPH3A (612159), OAS1 (164350), OAS3 (603351), OAS2 (603350), DTX1 (602582), RASAL1 (604118), DDX54 (611665), TPCN1 (609666), SLC8B1 (609841), SDS (182128), LHX5 (605992), RBM19 (616444), TBX5 (601620), TBX3 (601621), MED13L (608771)	CytoRegions Not Set				false	arr[hg19] 12q23.3q24.22(104,706,030-116,891,156)x3-4	chr12:104706030-116891156
LST.OSCHP	3.33	Gain	10	q22.1	624.743	44	5	UNC5B, UNC5B-AS1, SLC29A3, CDH23, CDH23-AS1	3	UNC5B (607870), SLC29A3 (612373), CDH23 (605516)	CytoRegions Not Set				false	arr[hg19] 10q22.1(72,786,848-73,411,591)x3-4	chr10:72786848-73411591
LST.OSCHP	3.33	Gain	22	q11.21	1024.594	78	27	USP18, LINC02592, LOC105379550, LINC01662, GGT3P, LOC102725072, LINC01663, DGCR6, PRODH, DGCR5, DGCR9, DGCR10, DGCR2, DGCR11, ESS2, TSSK2, GSC2, LINC01311, SLC25A1, CLTCL1, HIRA, MRPL40, C22orf39, UFD1, CDC45, CLDN5, LINC00895	14	USP18 (607057), DGCR6 (601279), PRODH (606810), DGCR2 (600594), ESS2 (601755), TSSK2 (610710), GSC2 (601845), SLC25A1 (190315), CLTCL1 (601273), HIRA (600237), MRPL40 (605089), UFD1 (601754), CDC45 (603465), CLDN5 (602101)	CytoRegions Not Set				false	arr[hg19] 22q11.21(18,633,977-19,658,571)x3-4	chr22:18633977-19658571
LST.OSCHP	3.33	Gain	4	p16.1	4236.427	217	64	WFS1, PPP2R2C, MAN2B2, MRFAP1, LINC02482, LOC93622, LINC002481, S100P, MRFAP1L1, BLOC1S4, KIAA0232, TBC1D14, LOC100129931, CCDC96, TADA2B, GRPEL1, LINC02447, SORCS2, MIR4798, PSAPL1, MIR4274, AFAP1-AS1, AFAP1, LOC389199, ABLIM2, MIR95, SH3TC1, HTRA3, LINC02517, ACOX3, TRMT44, GPR78, CPZ, HMX1, FAM90A26, USP17L10, USP17L20, USP17L11, USP17L18, USP17L12, USP17L21, USP17L13, USP17L15, USP17L17, USP17L19, USP17L22, USP17L5, USP17L30, USP17L29, USP17L24, USP17L25, USP17L26, USP17L28, USP17L27, USP17L9P, USP17L6P, DEFB131A, MIR548I2, DRD5, SLC2A9, WDR1, MIR3138, ZNF518B, CLNK	24	WFS1 (606201), PPP2R2C (605997), MRFAP1 (616905), S100P (600614), BLOC1S4 (605695), TBC1D14 (614855), TADA2B (608790), GRPEL1 (606173), SORCS2 (606284), AFAP1 (608252), ABLIM2 (612544), MIR95 (613185), HTRA3 (608785), ACOX3 (603402), TRMT44 (614309), GPR78 (606921), CPZ (603105), HMX1 (142992), USP17L9P (607011), DRD5 (126453), SLC2A9 (606142), WDR1 (604734), ZNF518B (617734), CLNK (611434)	CytoRegions Not Set				false	arr[hg19] 4p16.1(6,257,187-10,493,614)x3-4	chr4:6257187-10493614
LST.OSCHP	3.33	Gain	4	p15.31	605.046	41	0		0		CytoRegions Not Set				false	arr[hg19] 4p15.31(18,380,908-18,985,954)x3-4	chr4:18380908-18985954
LST.OSCHP	3.33	Gain	4	q21.22	306.051	19	0		0		CytoRegions Not Set				false	arr[hg19] 4q21.22(82,766,128-83,072,179)x3-4	chr4:82766128-83072179
LST.OSCHP	3.33	Gain	6	q27	272.527	18	0		0		CytoRegions Not Set				false	arr[hg19] 6q27(165,340,584-165,613,111)x3-4	chr6:165340584-165613111
LST.OSCHP	3.33	Gain	14	q11.2	75.118	19	0		0		CytoRegions Not Set				false	arr[hg19] 14q11.2(22,640,040-22,715,158)x3-4	chr14:22640040-22715158
LST.OSCHP	3.0	Gain	7	p21.1	267.309	19	1	ABCB5	1	ABCB5 (611785)	CytoRegions Not Set				false	arr[hg19] 7p21.1(20,552,820-20,820,129)x3	chr7:20552820-20820129
LST.OSCHP	3.0	Gain	9	q31.3	386.421	27	6	ACTL7B, ACTL7A, ELP1, FAM206A, CTNNAL1, TMEM245	4	ACTL7B (604304), ACTL7A (604303), ELP1 (603722), CTNNAL1 (604785)	CytoRegions Not Set				false	arr[hg19] 9q31.3(111,419,854-111,806,275)x3	chr9:111419854-111806275
LST.OSCHP	3.0	Gain	18	p11.21	463.883	32	8	AFG3L2, PRELID3A, LOC105371998, SPIRE1, PSMG2, CEP76, LINC01882, PTPN2	5	AFG3L2 (604581), PRELID3A (616545), SPIRE1 (609216), PSMG2 (609702), PTPN2 (176887)	CytoRegions Not Set				false	arr[hg19] 18p11.21(12,367,441-12,831,324)x3	chr18:12367441-12831324
LST.OSCHP	3.0	Gain	10	q23.2	983.329	209	16	AGAP11, FAM25A, GLUD1, SHLD2, NUTM2A, NUTM2A-AS1, LINC00863, NUTM2D, LINC00864, MIR4678, MINPP1, PAPSS2, ATAD1, CFL1P1, KLLN, PTEN	6	GLUD1 (138130), MINPP1 (605391), PAPSS2 (603005), ATAD1 (614452), KLLN (612105), PTEN (601728)	CytoRegions Not Set				false	arr[hg19] 10q23.2q23.31(88,768,656-89,751,985)x3	chr10:88768656-89751985
LST.OSCHP	3.0	Gain	12	q23.1	2632.946	194	16	APAF1, ANKS1B, LOC101928937, FAM71C, UHRF1BP1L, GOLGA2P5, MIR1827, ACTR6, DEPDC4, SCYL2, SLC17A8, NR1H4, GAS2L3, ANO4, SLC5A8, UTP20	9	APAF1 (602233), ANKS1B (607815), SCYL2 (616365), SLC17A8 (607557), NR1H4 (603826), GAS2L3 (617224), ANO4 (610111), SLC5A8 (608044), UTP20 (612822)	CytoRegions Not Set				false	arr[hg19] 12q23.1q23.2(99,072,232-101,705,178)x3	chr12:99072232-101705178
LST.OSCHP	3.0	Gain	4	p14	5410.824	372	49	ARAP2, LOC439933, DTHD1, MIR1255B1, LINC02505, LOC100508631, MIR4801, NWD2, C4orf19, RELL1, PGM2, TBC1D1, PTTG2, LINC02513, LINC01258, LINC01259, LINC02278, KLF3-AS1, KLF3, TLR10, TLR1, TLR6, FAM114A1, MIR574, TMEM156, KLHL5, WDR19, RFC1, KLB, MIR5591, RPL9, LIAS, LOC401127, UGDH, UGDH-AS1, SMIM14, UBE2K, PDS5A, LOC344967, N4BP2, RHOH, LINC02265, CHRNA9, RBM47, MIR4802, NSUN7, APBB2, UCHL1-AS1, UCHL1	26	ARAP2 (606645), DTHD1 (616979), RELL1 (611212), PGM2 (172000), TBC1D1 (609850), PTTG2 (604231), KLF3 (609392), TLR10 (606270), TLR1 (601194), TLR6 (605403), MIR574 (615469), KLHL5 (608064), WDR19 (608151), RFC1 (102579), KLB (611135), RPL9 (603686), LIAS (607031), UGDH (603370), UBE2K (602846), PDS5A (613200),  (611963), RHOH (602037), CHRNA9 (605116), NSUN7 (617185), APBB2 (602710), UCHL1 (191342)	CytoRegions Not Set				false	arr[hg19] 4p14p13(35,938,174-41,348,998)x3	chr4:35938174-41348998
LST.OSCHP	3.0	Gain	X	p22.2	13308.021	949	88	ASB9, ASB11, PIGA, VEGFD, PIR-FIGF, PIR, BMX, ACE2, GS1-594A7.3, CLTRN, CA5BP1, CA5B, INE2, ZRSR2, AP1S2, GRPR, MAGEB17, CTPS2, MIR548AM, S100G, SYAP1, TXLNG, RBBP7, REPS2, NHS, MIR4768, LOC101928389, NHS-AS1, SCML1, RAI2, LINC01456, BEND2, SCML2, CDKL5, RS1, PPEF1-AS1, PPEF1, PHKA2-AS1, PHKA2, ADGRG2, PDHA1, MAP3K15, SH3KBP1, BCLAF3, LOC729609, MAP7D2, MIR23C, EIF1AX, SCARNA9L, EIF1AX-AS1, RPS6KA3, CNKSR2, KLHL34, SMPX, MBTPS2, YY2, SMS, PHEX, PHEX-AS1, PTCHD1-AS, CBLL2, DDX53, PTCHD1, PRDX4, ACOT9, SAT1, APOO, CXorf58, KLHL15, EIF2S3, ZFX-AS1, ZFX, SUPT20HL2, SUPT20HL1, PDK3, PCYT1B, PCYT1B-AS1, POLA1, SCARNA23, ARX, MAGEB18, MAGEB6, MAGEB5, VENTXP1, PPP4R3C, DCAF8L2, MAGEB10, DCAF8L1	54	ASB9 (300890), ASB11 (300626), PIGA (311770), VEGFD (300091), PIR (300931), BMX (300101), ACE2 (300335), CLTRN (300631), CA5B (300230), INE2 (300165), ZRSR2 (300028), AP1S2 (300629), GRPR (305670), MAGEB17 (300763), CTPS2 (300380), S100G (302020), TXLNG (300677), RBBP7 (300825), REPS2 (300317), NHS (300457), SCML1 (300227), RAI2 (300217), SCML2 (300208), CDKL5 (300203), RS1 (300839), PPEF1 (300109), PHKA2 (300798), ADGRG2 (300572), PDHA1 (300502), MAP3K15 (300820), SH3KBP1 (300374), EIF1AX (300186), RPS6KA3 (300075), CNKSR2 (300724), SMPX (300226), MBTPS2 (300294), YY2 (300570), SMS (300105), PHEX (300550), PTCHD1 (300828), PRDX4 (300927), ACOT9 (300862), SAT1 (313020), APOO (300753), KLHL15 (300980), EIF2S3 (300161), ZFX (314980), PDK3 (300906), PCYT1B (300948), POLA1 (312040), ARX (300382), MAGEB6 (300467), MAGEB5 (300466), MAGEB10 (300761)	CytoRegions Not Set				false	arr[hg19] Xp22.2p21.3(15,119,832-28,427,853)x3	chrX:15119832-28427853
LST.OSCHP	3.0	Gain	18	q23	1204.937	94	14	ATP9B, NFATC1, LOC284240, LOC284241, CTDP1, KCNG2, PQLC1, HSBP1L1, TXNL4A, RBFA, RBFADN, ADNP2, PARD6G-AS1, PARD6G	7	ATP9B (614446), NFATC1 (600489), CTDP1 (604927), KCNG2 (605696), TXNL4A (611595), ADNP2 (617422), PARD6G (608976)	CytoRegions Not Set				false	arr[hg19] 18q23(76,802,847-78,007,784)x3	chr18:76802847-78007784
LST.OSCHP	3.0	Gain	6	p22.3	233.817	20	1	ATXN1	1	ATXN1 (601556)	CytoRegions Not Set				false	arr[hg19] 6p22.3(16,338,903-16,572,720)x3	chr6:16338903-16572720
LST.OSCHP	3.0	Gain	6	p21.32	3154.459	274	59	BAK1, GGNBP1, LINC00336, ITPR3, LOC101929188, UQCC2, MIR3934, IP6K3, LEMD2, MLN, LINC01016, MIR7159, MIR1275, GRM4, HMGA1, MIR6835, SMIM29, NUDT3, RPS10-NUDT3, RPS10, PACSIN1, SPDEF, C6orf106, LOC101929243, SNRPC, UHRF1BP1, TAF11, ANKS1A, TCP11, SCUBE3, ZNF76, DEF6, PPARD, FANCE, RPL10A, MIR7111, TEAD3, TULP1, FKBP5, MIR5690, LOC285847, ARMC12, CLPSL2, CLPSL1, CLPS, LHFPL5, SRPK1, SLC26A8, MAPK14, MAPK13, BRPF3, PNPLA1, C6orf222, ETV7, PXT1, KCTD20, STK38, SRSF3, MIR3925	40	BAK1 (600516), GGNBP1 (609495), ITPR3 (147267), UQCC2 (614461), IP6K3 (606993), LEMD2 (616312), MLN (158270), GRM4 (604100), HMGA1 (600701), SMIM29 (611419), NUDT3 (609228), RPS10 (603632), PACSIN1 (606512), SPDEF (608144), C6orf106 (612217), SNRPC (603522), TAF11 (600772), ANKS1A (608994), TCP11 (186982), SCUBE3 (614708), ZNF76 (194549), DEF6 (610094), PPARD (600409), FANCE (613976), RPL10A (615660), TEAD3 (603170), TULP1 (602280), FKBP5 (602623), CLPS (120105), LHFPL5 (609427), SRPK1 (601939), SLC26A8 (608480), MAPK14 (600289), MAPK13 (602899), BRPF3 (616856), PNPLA1 (612121), ETV7 (605255), KCTD20 (615932), STK38 (606964), SRSF3 (603364)	CytoRegions Not Set				false	arr[hg19] 6p21.32p21.2(33,460,803-36,615,262)x3	chr6:33460803-36615262
LST.OSCHP	3.0	Gain	6	q27	5294.138	378	64	C6orf118, PDE10A, LINC00473, LINC00602, LOC729681, TBXT, LOC101929297, PRR18, SFT2D1, LOC100289495, MPC1, RPS6KA2, RPS6KA2-IT1, MIR1913, RPS6KA2-AS1, RNASET2, MIR3939, FGFR1OP, CCR6, GPR31, LOC105378123, TCP10L2, UNC93A, TTLL2, TCP10, LOC105378127, LINC02538, LINC02487, LINC01558, LOC441179, AFDN-DT, AFDN, HGC6.3, KIF25-AS1, KIF25, FRMD1, LOC105378137, LOC101929420, DACT2, SMOC2, LOC105378146, LOC101929460, LOC102724357, LINC01615, LINC02544, LOC101929523, THBS2, WDR27, C6orf120, PHF10, TCTE3, ERMARD, LINC00242, LINC00574, LOC102724511, LOC154449, LOC285804, LINC01624, DLL1, FAM120B, MIR4644, PSMB1, TBP, PDCD2	24	PDE10A (610652), TBXT (601397), MPC1 (614738), RPS6KA2 (601685), RNASET2 (612944), FGFR1OP (605392), CCR6 (601835), GPR31 (602043), UNC93A (607995), TCP10 (187020), AFDN (159559), KIF25 (603815), DACT2 (608966), SMOC2 (607223), THBS2 (188061), C6orf120 (616987), PHF10 (613069), TCTE3 (186977), ERMARD (615532), DLL1 (606582), FAM120B (612266), PSMB1 (602017), TBP (600075), PDCD2 (600866)	CytoRegions Not Set				false	arr[hg19] 6q27(165,618,913-170,913,051)x3	chr6:165618913-170913051
LST.OSCHP	3.0	Gain	12	p13.33	9411.176	698	204	CACNA1C, CACNA1C-AS4, CACNA1C-IT3, CACNA1C-AS2, CACNA1C-AS1, ITFG2-AS1, FKBP4, ITFG2, NRIP2, FOXM1, RHNO1, TULP3, TEAD4, TSPAN9, LOC100128253, LINC02417, PRMT8, THCAT155, CRACR2A, PARP11, CCND2-AS1, CCND2, TIGAR, FGF23, FGF6, C12orf4, RAD51AP1, DYRK4, AKAP3, NDUFA9, GAU1, GALNT8, KCNA6, KCNA1, KCNA5, LINC02443, NTF3, ANO2, VWF, SNORA120, CD9, PLEKHG6, TNFRSF1A, SCNN1A, LTBR, CD27-AS1, CD27, TAPBPL, VAMP1, MRPL51, NCAPD2, SCARNA10, GAPDH, IFFO1, NOP2, CHD4, SCARNA11, LPAR5, ACRBP, ING4, ZNF384, PIANP, COPS7A, MLF2, PTMS, LAG3, CD4, GPR162, P3H3, GNB3, CDCA3, USP5, TPI1, SPSB2, LOC105369632, RPL13P5, DSTNP2, LRRC23, ENO2, ATN1, C12orf57, PTPN6, MIR200CHG, MIR200C, MIR141, PHB2, SCARNA12, EMG1, LPCAT3, C1S, C1R, C1RL, C1RL-AS1, RBP5, CLSTN3, PEX5, ACSM4, CD163L1, CD163, APOBEC1, GDF3, DPPA3, CLEC4C, NANOGNB, NANOG, SLC2A14, SLC2A3, FOXJ2, C3AR1, NECAP1, CLEC4A, POU5F1P3, ZNF705A, FAM66C, FAM90A1, FAM86FP, LINC02449, LINC00937, CLEC6A, CLEC4D, CLEC4E, AICDA, MFAP5, RIMKLB, A2ML1, PHC1, M6PR, KLRG1, LINC00612, A2M-AS1, A2M, PZP, A2MP1, MIR1244-2, MIR1244-1, MIR1244-3, MIR1244-4, LINC00987, LOC642846, LINC02367, LOC101928030, LOC728715, DDX12P, OVOS, KLRB1, LOC374443, CLEC2D, CLECL1, CD69, KLRF1, CLEC2B, KLRF2, CLEC2A, LINC02470, CLEC12A-AS1, CLEC12A, CLEC1B, CLEC12B, LOC102724020, CLEC9A, CLEC1A, CLEC7A, OLR1, TMEM52B, GABARAPL1, KLRD1, LOC101928100, KLRK1, KLRC4-KLRK1, KLRC4, KLRC3, KLRC2, KLRC1, EIF2S3B, LINC02446, KLRA1P, MAGOHB, STYK1, YBX3, LINC02366, TAS2R7, TAS2R8, TAS2R9, TAS2R10, PRR4, PRH1-PRR4, PRH1, TAS2R13, PRH2, PRH1-TAS2R14, TAS2R14, TAS2R50, TAS2R20, TAS2R19, TAS2R31, TAS2R46, TAS2R43, TAS2R30, SMIM10L1, TAS2R42, PRB3, PRB4, PRB1, PRB2	146	CACNA1C (114205), FKBP4 (600611), ITFG2 (617421), FOXM1 (602341), RHNO1 (614085), TULP3 (604730), TEAD4 (601714), TSPAN9 (613137), PRMT8 (610086), CRACR2A (614178), PARP11 (616706), CCND2 (123833), TIGAR (610775), FGF23 (605380), FGF6 (134921), C12orf4 (616082), RAD51AP1 (603070), DYRK4 (609181), AKAP3 (604689), NDUFA9 (603834), GALNT8 (606250), KCNA6 (176257), KCNA1 (176260), KCNA5 (176267), NTF3 (162660), ANO2 (610109), VWF (613160), CD9 (143030), PLEKHG6 (611743), TNFRSF1A (191190), SCNN1A (600228), LTBR (600979), CD27 (186711), TAPBPL (607081), VAMP1 (185880), MRPL51 (611855), NCAPD2 (615638), SCARNA10 (615639), GAPDH (138400), IFFO1 (610495), NOP2 (164031), CHD4 (603277), LPAR5 (606926), ACRBP (608352), ING4 (608524), ZNF384 (609951), PIANP (616065), COPS7A (616009), MLF2 (601401), PTMS (168440), LAG3 (153337), CD4 (186940), P3H3 (610342), GNB3 (139130), CDCA3 (607749), USP5 (601447), TPI1 (190450), SPSB2 (611658), ENO2 (131360), ATN1 (607462), C12orf57 (615140), PTPN6 (176883), MIR200C (612092), MIR141 (612093), PHB2 (610704), SCARNA12 (615642), EMG1 (611531), LPCAT3 (611950), C1S (120580), C1R (613785), C1RL (608974), RBP5 (611866), CLSTN3 (611324), PEX5 (600414), ACSM4 (614360), CD163L1 (606079), CD163 (605545), APOBEC1 (600130), GDF3 (606522), DPPA3 (608408), CLEC4C (606677), NANOG (607937), SLC2A14 (611039), SLC2A3 (138170), C3AR1 (605246), NECAP1 (611623), CLEC4A (605306), FAM90A1 (613041), CLEC6A (613579), CLEC4D (609964), CLEC4E (609962), AICDA (605257), MFAP5 (601103), RIMKLB (614054), A2ML1 (610627), PHC1 (602978), M6PR (154540), KLRG1 (604874), A2M (103950), PZP (176420), DDX12P (601151), KLRB1 (602890), CLEC2D (605659), CLECL1 (607467), CD69 (107273), KLRF1 (605029), CLEC2B (603242), CLEC2A (612087), CLEC12A (612088), CLEC1B (606783), CLEC12B (617573), CLEC9A (612252), CLEC1A (606782), CLEC7A (606264), OLR1 (602601), GABARAPL1 (607420), KLRD1 (602894), KLRK1 (611817), KLRC4 (602893), KLRC3 (602892), KLRC2 (602891), KLRC1 (161555), KLRA1P (604274), STYK1 (611433), YBX3 (603437), TAS2R7 (604793), TAS2R8 (604794), TAS2R9 (604795), TAS2R10 (604791), PRR4 (605359), PRH1 (168730), TAS2R13 (604792), PRH2 (168790), TAS2R14 (604790), TAS2R50 (609627), TAS2R20 (613962), TAS2R19 (613961), TAS2R31 (612669), TAS2R46 (612774), TAS2R43 (612668), TAS2R30 (613963), TAS2R42 (613966), PRB3 (168840), PRB4 (180990), PRB1 (180989), PRB2 (168810)	CytoRegions Not Set				false	arr[hg19] 12p13.33p13.2(2,170,432-11,581,608)x3	chr12:2170432-11581608
LST.OSCHP	3.0	Gain	1	q25.3	1503.607	115	18	CACNA1E, ZNF648, LINC01344, GLUL, TEDDM1, LINC00272, RGSL1, RNASEL, RGS16, LINC01686, RGS8, LINC01688, NPL, LOC647070, DHX9, SHCBP1L, LAMC1, LAMC1-AS1	9	CACNA1E (601013), GLUL (138290), RGSL1 (611012), RNASEL (180435), RGS16 (602514), RGS8 (607189), NPL (611412), DHX9 (603115), LAMC1 (150290)	CytoRegions Not Set				false	arr[hg19] 1q25.3(181,631,247-183,134,854)x3	chr1:181631247-183134854
LST.OSCHP	3.0	Gain	10	q21.2	2574.179	190	13	CCDC6, LINC01553, ANK3, CDK1, RHOBTB1, LINC00845, TMEM26, TMEM26-AS1, CABCOCO1, ARID5B, RTKN2, LOC283045, ZNF365	7	CCDC6 (601985), ANK3 (600465), CDK1 (116940), RHOBTB1 (607351), TMEM26 (617803), ARID5B (608538), ZNF365 (607818)	CytoRegions Not Set				false	arr[hg19] 10q21.2(61,659,820-64,233,999)x3	chr10:61659820-64233999
LST.OSCHP	3.0	Gain	16	q21	3184.825	239	3	CDH11, LINC02126, LINC00922	1	CDH11 (600023)	CytoRegions Not Set				false	arr[hg19] 16q21(62,458,350-65,643,175)x3	chr16:62458350-65643175
LST.OSCHP	3.0	Gain	10	q22.1	7809.964	561	77	CDH23, C10orf105, VSIR, MIR7152, PSAP, CHST3, SPOCK2, ASCC1, ANAPC16, DDIT4, DNAJB12, MICU1, MCU, MIR4676, OIT3, PLA2G12B, P4HA1, NUDT13, SNORA11F, ECD, FAM149B1, DNAJC9, DNAJC9-AS1, MRPS16, CFAP70, ANXA7, MSS51, PPP3CB, PPP3CB-AS1, USP54, MYOZ1, SYNPO2L, AGAP5, BMS1P4, GLUD1P3, SEC24C, FUT11, CHCHD1, ZSWIM8, ZSWIM8-AS1, NDST2, CAMK2G, C10orf55, PLAU, VCL, AP3M1, ADK, LOC102723439, KAT6B, LOC101929165, SNORD172, DUPD1, DUSP13, SAMD8, VDAC2, COMTD1, ZNF503, ZNF503-AS1, ZNF503-AS2, LOC101929234, LRMDA, MIR606, LOC105378367, KCNMA1, KCNMA1-AS1, KCNMA1-AS2, KCNMA1-AS3, DLG5, DLG5-AS1, POLR3A, RPS24, LINC00856, LINC00595, ZMIZ1-AS1, ZMIZ1, PPIF, ZCCHC24	43	CDH23 (605516), VSIR (615608), PSAP (176801), CHST3 (603799), SPOCK2 (607988), ASCC1 (614215), ANAPC16 (613427), DDIT4 (607729), DNAJB12 (608376), MICU1 (605084), MCU (614197), OIT3 (609330), PLA2G12B (611653), P4HA1 (176710), NUDT13 (609233), ECD (616464), DNAJC9 (611206), MRPS16 (609204), ANXA7 (186360), MSS51 (614773), PPP3CB (114106), MYOZ1 (605603), SEC24C (607185), FUT11 (616932), CHCHD1 (608842), NDST2 (603268), CAMK2G (602123), PLAU (191840), VCL (193065), AP3M1 (610366), ADK (102750), KAT6B (605880), DUSP13 (613191), SAMD8 (611575), VDAC2 (193245), ZNF503 (613902), LRMDA (614537), KCNMA1 (600150), DLG5 (604090), POLR3A (614258), RPS24 (602412), ZMIZ1 (607159), PPIF (604486)	CytoRegions Not Set				false	arr[hg19] 10q22.1q22.3(73,430,158-81,240,122)x3	chr10:73430158-81240122
LST.OSCHP	3.0	Gain	6	p22.3	669.721	41	4	CDKAL1, LINC00581, SOX4, CASC15	3	CDKAL1 (611259), SOX4 (184430), CASC15 (616610)	CytoRegions Not Set				false	arr[hg19] 6p22.3(21,071,161-21,740,882)x3	chr6:21071161-21740882
LST.OSCHP	3.0	Gain	11	q13.4	252.678	18	1	CLPB	1	CLPB (616254)	CytoRegions Not Set				false	arr[hg19] 11q13.4(72,004,834-72,257,512)x3	chr11:72004834-72257512
LST.OSCHP	3.0	Gain	1	p33	10604.127	783	97	CMPK1, LINC01389, FOXE3, FOXD2-AS1, FOXD2, TRABD2B, SKINT1L, SLC5A9, SPATA6, AGBL4, BEND5, LOC101929721, AGBL4-IT1, ELAVL4, DMRTA2, FAF1, CDKN2C, MIR4421, MIR6500, C1orf185, LINC01562, RNF11, TTC39A, TTC39A-AS1, EPS15, OSBPL9, NRDC, MIR761, RAB3B, TXNDC12, KTI12, TXNDC12-AS1, BTF3L4, ZFYVE9, CC2D1B, ORC1, PRPF38A, TUT4, GPX7, SHISAL2A, COA7, ZYG11B, ZYG11A, ECHDC2, SCP2, PODN, SLC1A7, CPT2, C1orf123, MAGOH, LOC100507564, LRP8, LINC01771, SLC25A3P1, DMRTB1, GLIS1, NDC1, YIPF1, DIO1, HSPB11, LRRC42, LDLRAD1, TMEM59, TCEANC2, MIR4781, CDCP2, CYB5RL, MRPL37, SSBP3, SSBP3-AS1, ACOT11, FAM151A, MROH7, MROH7-TTC4, TTC4, PARS2, TTC22, LEXM, DHCR24, TMEM61, BSND, PCSK9, USP24, LOC100507634, MIR4422HG, MIR4422, LINC01753, LINC01755, LINC01767, PLPP3, LOC101929935, PRKAA2, FYB2, C8A, C8B, DAB1, DAB1-AS1	50	CMPK1 (191710), FOXE3 (601094), FOXD2 (602211), TRABD2B (614913), SPATA6 (613947), AGBL4 (616476), ELAVL4 (168360), DMRTA2 (614804), FAF1 (604460), CDKN2C (603369), RNF11 (612598), EPS15 (600051), OSBPL9 (606737), NRDC (602651), RAB3B (179510), TXNDC12 (609448), ZFYVE9 (603755), ORC1 (601902), PRPF38A (617031), TUT4 (613692), GPX7 (615784), COA7 (615623), SCP2 (184755), PODN (608661), SLC1A7 (604471), CPT2 (600650), MAGOH (602603), LRP8 (602600), DMRTB1 (614805), GLIS1 (610378), NDC1 (610115), YIPF1 (617521), DIO1 (147892), TMEM59 (617084), CDCP2 (612320), MRPL37 (611843), SSBP3 (607390), ACOT11 (606803), TTC4 (606753), PARS2 (612036), LEXM (616446), DHCR24 (606418), BSND (606412), PCSK9 (607786), USP24 (610569), PLPP3 (607125), PRKAA2 (600497), C8A (120950), C8B (120960), DAB1 (603448)	CytoRegions Not Set				false	arr[hg19] 1p33p32.2(47,832,864-58,436,991)x3	chr1:47832864-58436991
LST.OSCHP	3.0	Gain	6	p21.2	4518.504	325	50	CMTR1, CCDC167, LINC02520, MIR4462, MDGA1, ZFAND3, BTBD9, BTBD9-AS1, GLO1, DNAH8, LOC100131047, GLP1R, SAYSD1, KCNK5, KCNK17, KCNK16, KIF6, DAAM2, LOC100505635, MOCS1, LINC00951, TDRG1, LRFN2, LOC101929555, UNC5CL, TSPO2, APOBEC2, OARD1, NFYA, ADCY10P1, TREML1, TREM2, TREML2, TREML3P, TREML4, TREML5P, TREM1, NCR2, LINC01276, FOXP4-AS1, FOXP4, MIR4641, MDFI, TFEB, PGC, FRS3, PRICKLE4, TOMM6, USP49, MED20	34	CMTR1 (616189), MDGA1 (609626), ZFAND3 (607455), BTBD9 (611237), GLO1 (138750), DNAH8 (603337), GLP1R (138032), KCNK5 (603493), KCNK17 (607370), KCNK16 (607369), KIF6 (613919), DAAM2 (606627), MOCS1 (603707), TDRG1 (615676), LRFN2 (612808), UNC5CL (617464), APOBEC2 (604797), OARD1 (614393), NFYA (189903), TREML1 (609714), TREM2 (605086), TREML2 (609715), TREML3P (609716), TREML4 (614664), TREM1 (605085), NCR2 (604531), FOXP4 (608924), MDFI (604971), TFEB (600744), PGC (169740), FRS3 (607744), PRICKLE4 (611389), TOMM6 (616168), MED20 (612915)	CytoRegions Not Set				false	arr[hg19] 6p21.2p21.1(37,369,241-41,887,745)x3	chr6:37369241-41887745
LST.OSCHP	3.0	Gain	12	q12	4433.381	315	21	CPNE8, KIF21A, ABCD2, C12orf40, SLC2A13, LINC02471, LRRK2, MUC19, CNTN1, PDZRN4, LINC02400, GXYLT1, YAF2, ZCRB1, MIR7851, PPHLN1, PRICKLE1, LINC02402, LINC02451, LINC02450, LINC02461	12	KIF21A (608283), ABCD2 (601081), SLC2A13 (611036), LRRK2 (609007), MUC19 (612170), CNTN1 (600016), PDZRN4 (609730), GXYLT1 (613321), YAF2 (607534), ZCRB1 (610750), PPHLN1 (608150), PRICKLE1 (608500)	CytoRegions Not Set				false	arr[hg19] 12q12(39,187,809-43,621,190)x3	chr12:39187809-43621190
LST.OSCHP	3.0	Gain	12	q22	1292.833	100	13	CRADD, LOC105369911, PLXNC1, CEP83, CEP83-DT, MIR5700, TMCC3, MIR7844, MIR492, KRT19P2, NDUFA12, NR2C1, FGD6	8	CRADD (603454), PLXNC1 (604259), CEP83 (615847), TMCC3 (617459), MIR492 (614384), NDUFA12 (614530), NR2C1 (601529), FGD6 (613520)	CytoRegions Not Set				false	arr[hg19] 12q22(94,178,497-95,471,330)x3	chr12:94178497-95471330
LST.OSCHP	3.0	Gain	18	q22.3	4471.189	292	26	CYB5A, C18orf63, LINC01922, FAM69C, CNDP2, CNDP1, LINC00909, ZNF407, ZADH2, TSHZ1, SMIM21, LINC01898, LOC339298, LINC01893, ZNF516, LOC101927989, C18orf65, LINC00908, LINC00683, LINC01927, LINC01879, ZNF236-DT, ZNF236, MBP, GALR1, LINC01029	10	CYB5A (613218), FAM69C (614544), CNDP2 (169800), CNDP1 (609064), ZNF407 (615894), TSHZ1 (614427), ZNF516 (615114), ZNF236 (604760), MBP (159430), GALR1 (600377)	CytoRegions Not Set				false	arr[hg19] 18q22.3q23(71,919,588-76,390,777)x3	chr18:71919588-76390777
LST.OSCHP	3.0	Gain	7	p22.1	9223.394	633	41	DAGLB, KDELR2, GRID2IP, ZDHHC4, C7orf26, ZNF853, ZNF316, ZNF12, PMS2CL, RSPH10B2, RSPH10B, CCZ1B, MIR3683, LOC100131257, C1GALT1, LOC101927354, COL28A1, LOC101927391, MIOS, RPA3, UMAD1, LOC100505921, GLCCI1, ICA1, LOC100505938, NXPH1, PER4, MGC4859, LOC100131472, NDUFA4, PHF14, THSD7A, TMEM106B, VWDE, LOC102725191, SCIN, ARL4A, ETV1, DGKB, AGMO, MEOX2	20	DAGLB (614016), KDELR2 (609024), GRID2IP (610639), ZNF12 (194536), C1GALT1 (610555), COL28A1 (609996), MIOS (615359), RPA3 (179837), GLCCI1 (614283), ICA1 (147625), NXPH1 (604639), NDUFA4 (603833), THSD7A (612249), TMEM106B (613413), SCIN (613416), ARL4A (604786), ETV1 (600541), DGKB (604070), AGMO (613738), MEOX2 (600535)	CytoRegions Not Set				false	arr[hg19] 7p22.1p21.2(6,476,422-15,699,816)x3	chr7:6476422-15699816
LST.OSCHP	3.0	Gain	20	p13	9314.92	654	132	DEFB125, DEFB126, DEFB127, DEFB128, DEFB129, DEFB132, C20orf96, ZCCHC3, NRSN2-AS1, SOX12, NRSN2, TRIB3, RBCK1, TBC1D20, CSNK2A1, TCF15, SRXN1, SCRT2, SLC52A3, FAM110A, ANGPT4, RSPO4, PSMF1, LOC105372493, TMEM74B, C20orf202, RAD21L1, SNPH, SDCBP2, FKBP1A-SDCBP2, SDCBP2-AS1, FKBP1A, MIR6869, NSFL1C, SIRPB2, SIRPD, SIRPB1, SIRPG, SIRPG-AS1, LOC100289473, SIRPA, PDYN-AS1, PDYN, STK35, LOC388780, TGM3, TGM6, SNRPB, SNORD119, ZNF343, TMC2, NOP56, MIR1292, SNORD110, SNORA51, SNORD86, SNORD56, SNORD57, IDH3B, EBF4, CPXM1, C20orf141, TMEM239, PCED1A, VPS16, PTPRA, GNRH2, MRPS26, OXT, AVP, UBOX5-AS1, UBOX5, FASTKD5, LZTS3, DDRGK1, ITPA, SLC4A11, C20orf194, ATRN, GFRA4, ADAM33, SIGLEC1, HSPA12B, C20orf27, SPEF1, CENPB, CDC25B, LINC01730, AP5S1, MAVS, PANK2, MIR103A2, MIR103B2, RNF24, SMOX, LINC01433, ADRA1D, PRNP, PRND, PRNT, RASSF2, SLC23A2, TMEM230, PCNA, PCNA-AS1, CDS2, PROKR2, LINC00658, LOC643406, LINC00654, LINC01729, GPCPD1, SHLD1, CHGB, TRMT6, MCM8, MCM8-AS1, CRLS1, LRRN4, FERMT1, CASC20, LINC01713, BMP2, LINC01428, LINC01751, LINC01706, MIR8062, HAO1, TMX4, PLCB1, PLCB1-IT1, PLCB4	75	SOX12 (601947), NRSN2 (610666), TRIB3 (607898), RBCK1 (610924), TBC1D20 (611663), CSNK2A1 (115440), TCF15 (601010), SRXN1 (617583), SLC52A3 (613350), FAM110A (611393), ANGPT4 (603705), RSPO4 (610573), PSMF1 (617858), SNPH (604942), SDCBP2 (617358), FKBP1A (186945), NSFL1C (606610), SIRPB1 (603889), SIRPG (605466), SIRPA (602461), PDYN (131340), STK35 (609370), TGM3 (600238), TGM6 (613900), SNRPB (182282), TMC2 (606707), NOP56 (614154), MIR1292 (614155), IDH3B (604526), EBF4 (609935), CPXM1 (609555), VPS16 (608550), PTPRA (176884), GNRH2 (602352), MRPS26 (611988), OXT (167050), AVP (192340), FASTKD5 (614272), LZTS3 (610484), DDRGK1 (616177), ITPA (147520), SLC4A11 (610206), C20orf194 (614146), ATRN (603130), ADAM33 (607114), SIGLEC1 (600751), HSPA12B (610702), SPEF1 (610674), CENPB (117140), CDC25B (116949), AP5S1 (614824), MAVS (609676), PANK2 (606157), MIR103A2 (613188), RNF24 (612489), SMOX (615854), ADRA1D (104219), PRNP (176640), PRND (604263), RASSF2 (609492), SLC23A2 (603791), TMEM230 (617019), PCNA (176740), CDS2 (603549), PROKR2 (607123), GPCPD1 (614124), CHGB (118920), MCM8 (608187), CRLS1 (608188), FERMT1 (607900), BMP2 (112261), HAO1 (605023), TMX4 (616766), PLCB1 (607120), PLCB4 (600810)	CytoRegions Not Set				false	arr[hg19] 20p13p12.2(69,093-9,384,013)x3	chr20:69093-9384013
LST.OSCHP	3.0	Gain	22	q11.1	2578.292	152	37	DUXAP8, BMS1P22, BMS1P18, BMS1P17, LINC01297, POTEH, POTEH-AS1, OR11H1, CCT8L2, TPTEP1, ANKRD62P1-PARP4P3, LINC01665, XKR3, HSFY1P1, GAB4, CECR7, IL17RA, TMEM121B, LINC01664, HDHD5, HDHD5-AS1, ADA2, CECR3, CECR2, SLC25A18, LOC101929372, ATP6V1E1, BCL2L13, BID, MIR3198-1, LINC00528, MICAL3, MIR648, LINC01634, PEX26, TUBA8, USP18	13	POTEH (608913), XKR3 (611674), IL17RA (605461), ADA2 (607575), CECR2 (607576), SLC25A18 (609303), ATP6V1E1 (108746), BID (601997), MICAL3 (608882), MIR648 (616205), PEX26 (608666), TUBA8 (605742), USP18 (607057)	CytoRegions Not Set				false	arr[hg19] 22q11.1q11.21(16,054,712-18,633,004)x3	chr22:16054712-18633004
LST.OSCHP	3.0	Gain	7	p11.2	12.608	21	1	EGFR	1	EGFR (131550)	CytoRegions Not Set				false	arr[hg19] 7p11.2(55,211,315-55,223,923)x3	chr7:55211315-55223923
LST.OSCHP	3.0	Gain	4	q13.1	4116.22	251	31	EPHA5, EPHA5-AS1, MIR1269A, LOC101927237, CENPC, STAP1, UBA6, UBA6-AS1, GNRHR, TMPRSS11D, TMPRSS11A, TMPRSS11GP, TMPRSS11F, LOC550113, SYT14P1, FTLP10, TMPRSS11BNL, TMPRSS11B, YTHDC1, TMPRSS11E, UGT2B17, UGT2B15, UGT2B10, UGT2A3, UGT2B7, LOC105377267, UGT2B11, UGT2B28, UGT2B4, UGT2A2, UGT2A1	19	EPHA5 (600004), CENPC (117141), STAP1 (604298), UBA6 (611361), GNRHR (138850), TMPRSS11D (605369), TMPRSS11A (611704), SYT14P1 (610892), YTHDC1 (617283), TMPRSS11E (610399), UGT2B17 (601903), UGT2B15 (600069), UGT2B10 (600070), UGT2A3 (616382), UGT2B7 (600068), UGT2B11 (603064), UGT2B28 (606497), UGT2B4 (600067), UGT2A1 (604716)	CytoRegions Not Set				false	arr[hg19] 4q13.1q13.2(66,348,481-70,464,701)x3	chr4:66348481-70464701
LST.OSCHP	3.0	Gain	1	q41	23985.235	1822	214	ESRRG, GPATCH2, SPATA17, SPATA17-AS1, LINC00210, LINC01653, RRP15, TGFB2-AS1, TGFB2, MIR548F3, TGFB2-OT1, C1orf143, LINC01710, LYPLAL1-DT, LYPLAL1, LOC102723886, ZC3H11B, RNU5F-1, SLC30A10, EPRS, BPNT1, IARS2, MIR215, MIR194-1, RAB3GAP2, MIR664A, SNORA36B, AURKAP1, MARK1, C1orf115, MARC2, MARC1, LINC01352, HLX-AS1, HLX, C1orf140, DUSP10, LINC01655, LINC02257, LINC02474, HHIPL2, TAF1A, TAF1A-AS1, MIA3, AIDA, BROX, FAM177B, DISP1, TLR5, SUSD4, CCDC185, CAPN8, CAPN2, TP53BP2, GTF2IP20, LOC100287497, FBXO28, DEGS1, LOC101927143, LOC101927164, NVL, MIR320B2, CNIH4, WDR26, MIR4742, CNIH3, DNAH14, LBR, ENAH, SRP9, EPHX1, TMEM63A, LEFTY1, PYCR2, MIR6741, LEFTY2, SDE2, H3F3A, H3F3AP4, LINC01703, ACBD3, ACBD3-AS1, MIXL1, LIN9, PARP1, STUM, ITPKB, ITPKB-IT1, PSEN2, COQ8A, CDC42BPA, ZNF678, ZNF847P, SNAP47, JMJD4, PRSS38, WNT9A, MIR5008, LOC107985355, WNT3A, ARF1, MIR3620, C1orf35, MRPL55, GUK1, GJC2, IBA57-DT, IBA57, OBSCN-AS1, OBSCN, TRIM11, MIR6742, TRIM17, HIST3H3, HIST3H2A, HIST3H2BB, MIR4666A, RNF187, BTNL10, RHOU, DUSP5P1, MIR4454, LOC105373159, RAB4A, SPHAR, CCSAP, ACTA1, NUP133, LOC101927478, ABCB10, TAF5L, URB2, LINC01682, LINC01736, GALNT2, PGBD5, LINC01737, COG2, AGT, CAPN9, C1orf198, LOC101927604, TTC13, ARV1, FAM89A, MIR1182, TRIM67, LOC149373, C1orf131, GNPAT, EXOC8, SPRTN, EGLN1, SNRPD2P2, TSNAX, TSNAX-DISC1, LINC00582, DISC1, DISC2, DISC1-IT1, SIPA1L2, LINC01745, LINC01744, MAP10, NTPCR, PCNX2, MAP3K21, KCNK1, MIR4427, SLC35F3, MIR4671, LOC101927765, COA6, TARBP1, LINC01354, IRF2BP2, LINC00184, LOC101927787, LINC01132, PP2672, LOC101927851, TOMM20, SNORA14B, RBM34, ARID4B, MIR4753, GGPS1, TBCE, B3GALNT2, GNG4, LYST, MIR1537, NID1, GPR137B, ERO1B, EDARADD, LGALS8, LGALS8-AS1, HEATR1, ACTN2, MTR, MT1HL1, RYR2, MIR4428, LOC100130331, ZP4, LINC01139, CHRM3, CHRM3-AS2, CHRM3-AS1, RPS7P5, FMN2, GREM2, RGS7	109	ESRRG (602969), GPATCH2 (616836), SPATA17 (611032), RRP15 (611193), TGFB2 (190220), LYPLAL1 (616548), SLC30A10 (611146), EPRS (138295), BPNT1 (604053), IARS2 (612801), MIR215 (610943), MIR194-1 (610940), RAB3GAP2 (609275), MARK1 (606511), MARC2 (614127), MARC1 (614126), HLX (142995), DUSP10 (608867), TAF1A (604903), MIA3 (613455), AIDA (612375), DISP1 (607502), TLR5 (603031), SUSD4 (615827), CAPN2 (114230), TP53BP2 (602143), FBXO28 (609100), DEGS1 (615843), NVL (602426), CNIH4 (617483), WDR26 (617424), DNAH14 (603341), LBR (600024), ENAH (609061), SRP9 (600707), EPHX1 (132810), LEFTY1 (603037), PYCR2 (616406), LEFTY2 (601877), H3F3A (601128), ACBD3 (606809), MIXL1 (609852), LIN9 (609375), PARP1 (173870), ITPKB (147522), PSEN2 (600759), COQ8A (606980), CDC42BPA (603412), WNT9A (602863), WNT3A (606359), ARF1 (103180), MRPL55 (611859), GUK1 (139270), GJC2 (608803), IBA57 (615316), OBSCN (608616), TRIM11 (607868), TRIM17 (606123), HIST3H3 (602820), HIST3H2A (615015), HIST3H2BB (615046), RNF187 (613754), RHOU (606366), RAB4A (179511), CCSAP (616762), ACTA1 (102610), NUP133 (607613), ABCB10 (605454), GALNT2 (602274), PGBD5 (616791), COG2 (606974), AGT (106150), CAPN9 (606401), ARV1 (611647), TRIM67 (610584), GNPAT (602744), EXOC8 (615283), SPRTN (616086), EGLN1 (606425), TSNAX (602964), DISC1 (605210), DISC2 (606271), SIPA1L2 (611609), PCNX2 (617656), MAP3K21 (614793), KCNK1 (601745), COA6 (614772), TARBP1 (605052), IRF2BP2 (615332), TOMM20 (601848), ARID4B (609696), GGPS1 (606982), TBCE (604934), B3GALNT2 (610194), GNG4 (604388), LYST (606897), NID1 (131390), GPR137B (604658), ERO1B (615437), EDARADD (606603), LGALS8 (606099), ACTN2 (102573), MTR (156570), RYR2 (180902), ZP4 (613514), CHRM3 (118494), FMN2 (606373), GREM2 (608832), RGS7 (602517)	CytoRegions Not Set				false	arr[hg19] 1q41q43(217,239,999-241,225,234)x3	chr1:217239999-241225234
LST.OSCHP	3.0	Gain	4	q32.1	307.4	21	4	ETFDH, PPID, FNIP2, C4orf45	3	ETFDH (231675), PPID (601753), FNIP2 (612768)	CytoRegions Not Set				false	arr[hg19] 4q32.1(159,605,038-159,912,438)x3	chr4:159605038-159912438
LST.OSCHP	3.0	Gain	4	q35.1	529.133	66	8	FAM149A, FLJ38576, CYP4V2, KLKB1, F11, F11-AS1, MTNR1A, FAT1	5	CYP4V2 (608614), KLKB1 (229000), F11 (264900), MTNR1A (600665), FAT1 (600976)	CytoRegions Not Set				false	arr[hg19] 4q35.1q35.2(187,059,562-187,588,695)x3	chr4:187059562-187588695
LST.OSCHP	3.0	Gain	4	q31.3	5690.213	429	39	FAM160A1, GATB, LINC02273, FBXW7, FBXW7-AS1, MIR3140, MIR4453HG, MIR4453, TMEM154, TIGD4, ARFIP1, LOC729870, FHDC1, TRIM2, ANXA2P1, MND1, TMEM131L, LOC100419170, TLR2, RNF175, SFRP2, DCHS2, PLRG1, FGB, FGA, FGG, LRAT, RBM46, NPY2R, MAP9, LOC102724776, GUCY1A1, GUCY1B1, ASIC5, TDO2, CTSO, PDGFC, GLRB, GRIA2	24	GATB (603645), FBXW7 (606278), ARFIP1 (605928), TRIM2 (614141), MND1 (611422), TMEM131L (616243), TLR2 (603028), SFRP2 (604157), DCHS2 (612486), PLRG1 (605961), FGB (134830), FGA (134820), FGG (134850), LRAT (604863), NPY2R (162642), MAP9 (610070), GUCY1A1 (139396), GUCY1B1 (139397), ASIC5 (616693), TDO2 (191070), CTSO (600550), PDGFC (608452), GLRB (138492), GRIA2 (138247)	CytoRegions Not Set				false	arr[hg19] 4q31.3q32.1(152,580,515-158,270,728)x3	chr4:152580515-158270728
LST.OSCHP	3.0	Gain	4	q35.2	675.995	49	4	FAT1, LINC02374, LOC339975, LINC02514	1	FAT1 (600976)	CytoRegions Not Set				false	arr[hg19] 4q35.2(187,635,238-188,311,233)x3	chr4:187635238-188311233
LST.OSCHP	3.0	Gain	7	q22.1	1761.764	137	44	FBXO24, PCOLCE-AS1, PCOLCE, MOSPD3, TFR2, ACTL6B, LOC105375429, GNB2, GIGYF1, POP7, EPO, ZAN, EPHB4, SLC12A9, SLC12A9-AS1, TRIP6, MIR6875, SRRT, UFSP1, ACHE, MUC3A, MUC12, LOC102724094, MUC17, TRIM56, SERPINE1, AP1S1, MIR4653, VGF, NAT16, MOGAT3, PLOD3, ZNHIT1, CLDN15, FIS1, LNCPRESS1, LOC101927746, IFT22, COL26A1, LINC01007, MYL10, CUX1, SH2B2, MIR4285	32	FBXO24 (609097), PCOLCE (600270), MOSPD3 (609125), TFR2 (604720), ACTL6B (612458), GNB2 (139390), GIGYF1 (612064), POP7 (606113), EPO (133170), ZAN (602372), EPHB4 (600011), SLC12A9 (616861), TRIP6 (602933), SRRT (614469), UFSP1 (611481), ACHE (100740), MUC3A (158371), MUC12 (604609), MUC17 (608424), TRIM56 (616996), SERPINE1 (173360), AP1S1 (603531), VGF (602186), NAT16 (615783), MOGAT3 (610184), PLOD3 (603066), CLDN15 (615778), FIS1 (609003), COL26A1 (608927), MYL10 (617177), CUX1 (116896), SH2B2 (605300)	CytoRegions Not Set				false	arr[hg19] 7q22.1(100,198,385-101,960,149)x3	chr7:100198385-101960149
LST.OSCHP	3.0	Gain	1	q23.1	23740.756	1867	307	FCRL4, FCRL3, FCRL2, FCRL1, CD5L, LOC105371458, KIRREL1, KIRREL1-IT1, LINC01704, CD1D, CD1A, CD1C, CD1B, CD1E, OR10T2, OR10K2, OR10K1, OR10R2, OR6Y1, OR6P1, OR10X1, OR10Z1, SPTA1, OR6K2, OR6K3, OR6K6, OR6N1, OR6N2, MNDA, PYHIN1, PYDC5, IFI16, AIM2, CADM3, CADM3-AS1, ACKR1, FCER1A, OR10J3, OR10J1, OR10J4, OR10J5, APCS, CRP, DUSP23, FCRL6, SLAMF8, SNHG28, VSIG8, CFAP45, MIR4259, TAGLN2, IGSF9, SLAMF9, LINC01133, PIGM, KCNJ10, KCNJ9, IGSF8, ATP1A2, ATP1A4, CASQ1, LOC729867, PEA15, DCAF8, LOC100287049, PEX19, COPA, SUMO1P3, NCSTN, NHLH1, VANGL2, SLAMF6, CD84, SLAMF1, CD48, SLAMF7, LY9, CD244, ITLN1, LOC101928372, ITLN2, F11R, TSTD1, USF1, ARHGAP30, NECTIN4, KLHDC9, PFDN2, NIT1, DEDD, LOC112543491, UFC1, USP21, PPOX, B4GALT3, ADAMTS4, NDUFS2, FCER1G, APOA2, TOMM40L, MIR5187, NR1I3, PCP4L1, MPZ, SDHC, CFAP126, FCGR2A, HSPA6, FCGR3A, FCGR2C, HSPA7, FCGR3B, FCGR2B, RPL31P11, FCRLA, FCRLB, DUSP12, ATF6, OLFML2B, NOS1AP, MIR4654, MIR556, SPATA46, C1orf226, SH2D1B, UHMK1, UAP1, DDR2, HSD17B7, CCDC190, RGS4, RGS5, LOC101928404, NUF2, LOC100422212, PBX1, LOC100505795, LMX1A, RXRG, LOC400794, LRRC52, MGST3, ALDH9A1, LOC440700, TMCO1, LOC100147773, UCK2, MIR3658, FAM78B, MIR921, LINC01675, FMO9P, POGK, TADA1, ILDR2, MAEL, GPA33, DUSP27, LINC01363, POU2F1, CD247, CREG1, RCSD1, MPZL1, ADCY10, MPC2, DCAF6, MIR1255B2, GPR161, TIPRL, SFT2D2, ANKRD36BP1, TBX19, MIR557, LOC100505918, LOC101928565, XCL2, XCL1, DPT, LINC00626, LINC00970, LOC101928596, ATP1B1, NME7, BLZF1, CCDC181, SLC19A2, F5, SELP, SELL, SELE, METTL18, C1orf112, SCYL3, KIFAP3, METTL11B, MIR3119-2, MIR3119-1, LINC01681, LINC01142, LOC101928650, GORAB, PRRX1, MROH9, FMO3, MIR1295A, MIR1295B, FMO6P, FMO2, FMO1, FMO4, TOP1P1, PRRC2C, MYOC, VAMP4, METTL13, DNM3, DNM3-IT1, DNM3OS, MIR214, MIR3120, MIR199A2, C1orf105, PIGC, SUCO, FASLG, TNFSF18, TNFSF4, LOC100506023, LOC101928673, PRDX6, SLC9C2, ANKRD45, TEX50, KLHL20, CENPL, DARS2, GAS5-AS1, GAS5, SNORD81, SNORD47, SNORD80, SNORD79, SNORD78, SNORD44, SNORA103, SNORD77, SNORD76, SNORD75, SNORD74, ZBTB37, SERPINC1, RC3H1, LOC102724601, RABGAP1L, GPR52, LOC101928696, CACYBP, MRPS14, TNN, KIAA0040, TNR, LINC01657, COP1, SCARNA3, PAPPA2, ASTN1, MIR488, BRINP2, LINC01645, LINC01741, SEC16B, CRYZL2P-SEC16B, CRYZL2P, RASAL2-AS1, RASAL2, TEX35, C1orf220, MIR4424, RALGPS2, ANGPTL1, FAM20B, TOR3A, ABL2, SOAT1, AXDND1, NPHS2, TDRD5, FAM163A, TOR1AIP2, TOR1AIP1, CEP350, QSOX1, FLJ23867, LHX4, LHX4-AS1, ACBD6, MIR3121, OVAAL, XPR1, KIAA1614, KIAA1614-AS1, STX6, MR1, IER5, LINC01732, LINC01699	182	FCRL4 (605876), FCRL3 (606510), FCRL2 (606509), FCRL1 (606508), CD5L (602592), KIRREL1 (607428), CD1D (188410), CD1A (188370), CD1C (188340), CD1B (188360), CD1E (188411), SPTA1 (182860), MNDA (159553), PYHIN1 (612677), IFI16 (147586), AIM2 (604578), CADM3 (609743), ACKR1 (613665), FCER1A (147140), APCS (104770), CRP (123260), FCRL6 (613562), SLAMF8 (606620), CFAP45 (605152), TAGLN2 (604634), IGSF9 (609738), SLAMF9 (608589), PIGM (610273), KCNJ10 (602208), KCNJ9 (600932), IGSF8 (606644), ATP1A2 (182340), ATP1A4 (607321), CASQ1 (114250), PEA15 (603434), DCAF8 (615820), PEX19 (600279), COPA (601924), NCSTN (605254), NHLH1 (162360), VANGL2 (600533), SLAMF6 (606446), CD84 (604513), SLAMF1 (603492), CD48 (109530), SLAMF7 (606625), LY9 (600684), CD244 (605554), ITLN1 (609873), ITLN2 (609874), F11R (605721), TSTD1 (616041), USF1 (191523), ARHGAP30 (614264), NECTIN4 (609607), KLHDC9 (617375), PFDN2 (613466), NIT1 (604618), DEDD (606841), UFC1 (610554), USP21 (604729), PPOX (600923), B4GALT3 (604014), ADAMTS4 (603876), NDUFS2 (602985), FCER1G (147139), APOA2 (107670), NR1I3 (603881), MPZ (159440), SDHC (602413), CFAP126 (616119), FCGR2A (146790), HSPA6 (140555), FCGR3A (146740), FCGR2C (612169), HSPA7 (140556), FCGR3B (610665), FCGR2B (604590), FCRLA (606891), FCRLB (609251), DUSP12 (604835), ATF6 (605537), NOS1AP (605551), SPATA46 (617257), SH2D1B (608510), UHMK1 (608849), UAP1 (602862), DDR2 (191311), HSD17B7 (606756), RGS4 (602516), RGS5 (603276), NUF2 (611772), PBX1 (176310), LMX1A (600298), RXRG (180247), LRRC52 (615218), MGST3 (604564), ALDH9A1 (602733), TMCO1 (614123), UCK2 (609329), TADA1 (612763), MAEL (611368), GPA33 (602171), POU2F1 (164175), CD247 (186780), RCSD1 (610579), MPZL1 (604376), ADCY10 (605205), MPC2 (614737), DCAF6 (610494), GPR161 (612250), TIPRL (611807), TBX19 (604614), XCL2 (604828), XCL1 (600250), DPT (125597), ATP1B1 (182330), NME7 (613465), BLZF1 (608692), SLC19A2 (603941), F5 (612309), SELP (173610), SELL (153240), SELE (131210), METTL18 (615255), SCYL3 (608192), KIFAP3 (601836), GORAB (607983), PRRX1 (167420), FMO3 (136132), FMO2 (603955), FMO1 (136130), FMO4 (136131), PRRC2C (617373), MYOC (601652), VAMP4 (606909), METTL13 (617987), DNM3 (611445), MIR214 (610721), MIR3120 (614722), MIR199A2 (610720), PIGC (601730), FASLG (134638), TNFSF18 (603898), TNFSF4 (603594), PRDX6 (602316), KLHL20 (617679), CENPL (611503), DARS2 (610956), GAS5 (608280), SERPINC1 (107300), RC3H1 (609424), RABGAP1L (609238), GPR52 (604106), CACYBP (606186), MRPS14 (611978), TNN (617472), KIAA0040 (616696), TNR (601995), COP1 (608067), ASTN1 (600904), SEC16B (612855), RASAL2 (606136), RALGPS2 (617819), ANGPTL1 (603874), FAM20B (611063), TOR3A (607555), ABL2 (164690), SOAT1 (102642), NPHS2 (604766), TDRD5 (617748), FAM163A (611727), TOR1AIP2 (614513), TOR1AIP1 (614512), CEP350 (617870), QSOX1 (603120), LHX4 (602146), ACBD6 (616352), XPR1 (605237), STX6 (603944), MR1 (600764), IER5 (607177)	CytoRegions Not Set				false	arr[hg19] 1q23.1q25.3(157,531,582-181,272,338)x3	chr1:157531582-181272338
LST.OSCHP	3.0	Gain	18	q21.31	5640.651	507	31	FECH, NARS, LOC100505549, ATP8B1, NEDD4L, MIR122, MIR3591, ALPK2, SNORA108, LOC101927322, MALT1, LINC01926, ZNF532, OACYLP, SEC11C, GRP, RAX, CPLX4, LMAN1, CCBE1, PMAIP1, MC4R, CDH20, LINC01544, RNF152, PIGN, RELCH, TNFRSF11A, ZCCHC2, PHLPP1, BCL2	20	FECH (612386), NARS (108410), ATP8B1 (602397), NEDD4L (606384), MIR122 (609582), MALT1 (604860), GRP (137260), RAX (601881), CPLX4 (609586), LMAN1 (601567), CCBE1 (612753), PMAIP1 (604959), MC4R (155541), CDH20 (605807), RNF152 (616512), PIGN (606097), RELCH (618001), TNFRSF11A (603499), PHLPP1 (609396), BCL2 (151430)	CytoRegions Not Set				false	arr[hg19] 18q21.31q21.33(55,240,504-60,881,155)x3	chr18:55240504-60881155
LST.OSCHP	3.0	Gain	4	p16.3	419.926	61	9	FGFR3, LETM1, NSD2, SCARNA22, NELFA, MIR943, C4orf48, NAT8L, POLN	7	FGFR3 (134934), LETM1 (604407), NSD2 (602952), NELFA (606026), C4orf48 (614690), NAT8L (610647), POLN (610887)	CytoRegions Not Set				false	arr[hg19] 4p16.3(1,801,609-2,221,535)x3	chr4:1801609-2221535
LST.OSCHP	3.0	Gain	5	q11.2	4399.264	320	39	FST, NDUFS4, LINC02105, ARL15, MIR581, LINC01033, HSPB3, SNX18, LOC102467080, ESM1, LOC102467081, GZMK, GZMA, CDC20B, GPX8, MIR449A, MIR449B, MIR449C, MCIDAS, CCNO, DHX29, MTREX, PLPP1, MIR5687, RNF138P1, SLC38A9, DDX4, IL31RA, IL6ST, FLJ31104, ANKRD55, LINC01948, C5orf67, MAP3K1, SETD9, MIER3, GPBP1, ACTBL2, LINCR-0003	21	FST (136470), NDUFS4 (602694), HSPB3 (604624), ESM1 (601521), GZMK (600784), GZMA (140050), GPX8 (617172), MIR449A (613131), MIR449B (613132), MCIDAS (614086), CCNO (607752), DHX29 (612720), PLPP1 (607124), SLC38A9 (616203), DDX4 (605281), IL31RA (609510), IL6ST (600694), ANKRD55 (615189), MAP3K1 (600982), GPBP1 (608412), ACTBL2 (614835)	CytoRegions Not Set				false	arr[hg19] 5q11.2(52,502,643-56,901,907)x3	chr5:52502643-56901907
LST.OSCHP	3.0	Gain	4	q32.1	4486.375	309	17	FSTL5, LOC101928052, MIR4454, NAF1, NPY1R, NPY5R, TKTL2, TMA16, MARCH1, ANP32C, SMIM31, APELA, TRIM61, FAM218A, TRIM60, TMEM192, KLHL2	7	NAF1 (617868), NPY1R (162641), NPY5R (602001), MARCH1 (613331), ANP32C (606877), APELA (615594), KLHL2 (605774)	CytoRegions Not Set				false	arr[hg19] 4q32.1q32.3(161,690,357-166,176,732)x3	chr4:161690357-166176732
LST.OSCHP	3.0	Gain	16	q12.2	1897.913	126	18	FTO, FTO-IT1, LINC02169, IRX3, LINC02140, LOC101927480, CRNDE, IRX5, IRX6, MMP2-AS1, MMP2, LPCAT2, CAPNS2, SLC6A2, CES1P2, CES1P1, CES1, CES5A	10	FTO (610966), IRX3 (612985), CRNDE (615624), IRX5 (606195), IRX6 (606196), MMP2 (120360), LPCAT2 (612040), CAPNS2 (616767), SLC6A2 (163970), CES1 (114835)	CytoRegions Not Set				false	arr[hg19] 16q12.2(54,009,687-55,907,600)x3	chr16:54009687-55907600
LST.OSCHP	3.0	Gain	4	p12	6870.584	227	35	GABRB1, COMMD8, ATP10D, CORIN, MIR8053, LOC101927179, NFXL1, LOC101927157, CNGA1, NIPAL1, TXK, TEC, SLAIN2, SLC10A4, ZAR1, FRYL, OCIAD1, OCIAD1-AS1, OCIAD2, CWH43, DCUN1D4, LRRC66, SGCB, LINC02480, SPATA18, USP46, USP46-AS1, DANCR, MIR4449, SNORA26, ERVMER34-1, LINC01618, RASL11B, SCFD2, FIP1L1	17	GABRB1 (137190), COMMD8 (616656), CORIN (605236), CNGA1 (123825), TXK (600058), TEC (600583), SLAIN2 (610492), ZAR1 (607520), DCUN1D4 (612977), SGCB (600900), SPATA18 (612814), USP46 (612849), DANCR (614625), MIR4449 (614627), SNORA26 (614626), RASL11B (612404), FIP1L1 (607686)	CytoRegions Not Set				false	arr[hg19] 4p12q12(47,408,708-54,279,292)x3	chr4:47408708-54279292
LST.OSCHP	3.0	Gain	16	q22.1	1147.055	117	30	GFOD2, RANBP10, TSNAXIP1, CENPT, THAP11, NUTF2, EDC4, NRN1L, PSKH1, CTRL, PSMB10, LCAT, SLC12A4, DPEP3, DPEP2, DPEP2NB, DDX28, DUS2, NFATC3, ESRP2, MIR6773, PLA2G15, SLC7A6, SLC7A6OS, PRMT7, SMPD3, ZFP90, CDH3, CDH1, TANGO6	24	RANBP10 (614031), TSNAXIP1 (607720), CENPT (611510), THAP11 (609119), NUTF2 (605813), EDC4 (606030), PSKH1 (177015), CTRL (118888), PSMB10 (176847), LCAT (606967), SLC12A4 (604119), DPEP3 (609926), DPEP2 (609925), DDX28 (607618), DUS2 (609707), NFATC3 (602698), ESRP2 (612960), PLA2G15 (609362), SLC7A6 (605641), PRMT7 (610087), SMPD3 (605777), ZFP90 (609451), CDH3 (114021), CDH1 (192090)	CytoRegions Not Set				false	arr[hg19] 16q22.1(67,749,377-68,896,432)x3	chr16:67749377-68896432
LST.OSCHP	3.0	Gain	7	q36.1	1275.075	137	32	GIMAP1-GIMAP5, GIMAP5, TMEM176B, TMEM176A, AOC1, KCNH2, NOS3, ATG9B, ABCB8, ASIC3, CDK5, SLC4A2, FASTK, TMUB1, AGAP3, GBX1, ASB10, IQCA1L, ABCF2, CHPF2, MIR671, SMARCD3, NUB1, WDR86, WDR86-AS1, CRYGN, MIR3907, RHEB, PRKAG2, LOC644090, PRKAG2-AS1, GALNTL5	25	GIMAP5 (608086), TMEM176B (610385), TMEM176A (610334), AOC1 (104610), KCNH2 (152427), NOS3 (163729), ATG9B (612205), ABCB8 (605464), ASIC3 (611741), CDK5 (123831), SLC4A2 (109280), FASTK (606965), TMUB1 (614792), AGAP3 (616813), GBX1 (603354), ASB10 (615054), ABCF2 (612510), CHPF2 (608037), MIR671 (615245), SMARCD3 (601737), NUB1 (607981), CRYGN (609603), RHEB (601293), PRKAG2 (602743), GALNTL5 (615133)	CytoRegions Not Set				false	arr[hg19] 7q36.1(150,435,472-151,710,547)x3	chr7:150435472-151710547
LST.OSCHP	3.0	Gain	22	q11.23	6748.552	509	109	GSTT4, GSTTP2, CABIN1, SUSD2, GGT5, POM121L9P, SPECC1L, SPECC1L-ADORA2A, ADORA2A, ADORA2A-AS1, UPB1, GUCD1, SNRPD3, GGT1, LRRC75B, BCRP3, POM121L10P, PIWIL3, TOP1P2, SGSM1, TMEM211, KIAA1671, LOC100128531, CRYBB3, CRYBB2, IGLL3P, LRP5L, CRYBB2P1, MIR6817, GRK3, MYO18B, SEZ6L, ASPHD2, HPS4, SRRD, TFIP11, LOC100507599, TPST2, MIR548J, CRYBB1, CRYBA4, MIAT, MIATNB, LOC110091768, LINC01422, LOC284898, LOC105372977, LINC01638, LINC02554, MN1, PITPNB, TTC28-AS1, MIR3199-1, MIR3199-2, TTC28, MIR5739, CHEK2, HSCB, CCDC117, XBP1, ZNRF3, ZNRF3-AS1, C22orf31, KREMEN1, EMID1, RHBDD3, EWSR1, GAS2L1, RASL10A, AP1B1, SNORD125, RFPL1S, RFPL1, NEFH, THOC5, NIPSNAP1, NF2, CABP7, ZMAT5, UQCR10, ASCC2, MTMR3, MIR6818, HORMAD2-AS1, HORMAD2, LIF-AS1, LIF, LOC91370, OSM, CASTOR1, TBC1D10A, SF3A1, CCDC157, KIAA1656, RNF215, SEC14L2, MTFP1, LOC105372990, SEC14L3, SDC4P, SEC14L4, SEC14L6, GAL3ST1, PES1, TCN2, SLC35E4, DUSP18, OSBP2, MIR3200	58	CABIN1 (604251), SUSD2 (615825), GGT5 (137168), SPECC1L (614140), ADORA2A (102776), UPB1 (606673), SNRPD3 (601062), GGT1 (612346), PIWIL3 (610314), SGSM1 (611417), CRYBB3 (123630), CRYBB2 (123620), GRK3 (109636), MYO18B (607295), SEZ6L (607021), HPS4 (606682), SRRD (602254), TFIP11 (612747), TPST2 (603126), CRYBB1 (600929), CRYBA4 (123631), MIAT (611082), MN1 (156100), PITPNB (606876), TTC28 (615098), CHEK2 (604373), HSCB (608142), XBP1 (194355), ZNRF3 (612062), KREMEN1 (609898), EMID1 (608926), EWSR1 (133450), GAS2L1 (602128), RASL10A (602220), AP1B1 (600157), RFPL1S (605972), RFPL1 (605968), NEFH (162230), THOC5 (612733), NIPSNAP1 (603249), NF2 (607379), UQCR10 (610843), ASCC2 (614216), MTMR3 (603558), LIF (159540), OSM (165095), CASTOR1 (617034), TBC1D10A (610020), SF3A1 (605595), SEC14L2 (607558), MTFP1 (610235), SEC14L3 (612824), SEC14L4 (612825), GAL3ST1 (602300), PES1 (605819), TCN2 (613441), DUSP18 (611446), OSBP2 (606729)	CytoRegions Not Set				false	arr[hg19] 22q11.23q12.2(24,390,317-31,138,869)x3	chr22:24390317-31138869
LST.OSCHP	3.0	Gain	6	p22.1	1591.285	126	57	HCG15, ZNF311, LOC100129636, OR2W1, OR2B3, OR2J1, OR2J3, OR2J2, LOC101929006, OR14J1, OR5V1, OR12D3, OR12D2, OR12D1, OR11A1, OR10C1, OR2H1, MAS1L, LINC01015, UBD, SNORD32B, OR2H2, GABBR1, MOG, ZFP57, HLA-F, HLA-F-AS1, IFITM4P, HCG4, HLA-V, HLA-G, ZNRD1ASP, HCP5B, HLA-H, HCG4B, HLA-A, HCG9, HLA-J, ZNRD1, PPP1R11, RNF39, TRIM31, TRIM31-AS1, TRIM40, TRIM10, TRIM15, TRIM26, HCG17, HLA-L, MIR6891, HCG18, TRIM39, TRIM39-RPP21, RPP21, HLA-E, LINC02569, GNL1	23	OR2J3 (615016), MAS1L (607235), UBD (606050), OR2H2 (600578), GABBR1 (603540), MOG (159465), ZFP57 (612192), HLA-F (143110), HLA-G (142871), HLA-A (142800), HCG9 (615797), ZNRD1ASP (615714), ZNRD1 (607525), PPP1R11 (606670), RNF39 (607524), TRIM31 (609316), TRIM40 (616976), TRIM10 (605701), TRIM26 (600830), TRIM39 (605700), RPP21 (612524), HLA-E (143010), GNL1 (143024)	CytoRegions Not Set				false	arr[hg19] 6p22.1p21.33(28,927,334-30,518,619)x3	chr6:28927334-30518619
LST.OSCHP	3.0	Gain	1	p34.2	1652.972	121	21	HIVEP3, GUCA2B, GUCA2A, FOXJ3, RIMKLA, ZMYND12, CCDC30, PPCS, PPIH, YBX1, CLDN19, P3H1, C1orf50, LOC105378683, TMEM269, SVBP, ERMAP, ZNF691, LOC339539, SLC2A1, SLC2A1-AS1	12	HIVEP3 (606649), GUCA2B (601271), GUCA2A (139392), FOXJ3 (616035), PPCS (609853), PPIH (606095), YBX1 (154030), CLDN19 (610036), P3H1 (610339), SVBP (617853), ERMAP (609017), SLC2A1 (138140)	CytoRegions Not Set				false	arr[hg19] 1p34.2(41,951,382-43,604,354)x3	chr1:41951382-43604354
LST.OSCHP	3.0	Gain	6	p21.32	402.714	27	16	HLA-DQA2, MIR3135B, HLA-DQB2, HLA-DOB, TAP2, PSMB8, PSMB8-AS1, TAP1, PSMB9, LOC100294145, HLA-DMB, HLA-DMA, BRD2, HLA-DOA, HLA-DPA1, HLA-DPB1	13	HLA-DQA2 (613503), HLA-DQB2 (615161), HLA-DOB (600629), TAP2 (170261), PSMB8 (177046), TAP1 (170260), PSMB9 (177045), HLA-DMB (142856), HLA-DMA (142855), BRD2 (601540), HLA-DOA (142930), HLA-DPA1 (142880), HLA-DPB1 (142858)	CytoRegions Not Set				false	arr[hg19] 6p21.32(32,658,178-33,060,892)x3	chr6:32658178-33060892
LST.OSCHP	3.0	Gain	4	q21.22	1764.173	114	21	HNRNPD, HNRNPDL, ENOPH1, TMEM150C, LINC00575, SCD5, MIR575, SEC31A, THAP9-AS1, SNORD143, SNORD144, THAP9, LIN54, COPS4, PLAC8, COQ2, HPSE, HELQ, MRPS18C, ABRAXAS1, GPAT3	15	HNRNPD (601324), HNRNPDL (607137), TMEM150C (617292), SCD5 (608370), SEC31A (610257), THAP9 (612537), LIN54 (613367), COPS4 (616008), PLAC8 (607515), COQ2 (609825), HPSE (604724), HELQ (606769), MRPS18C (611983), ABRAXAS1 (611143), GPAT3 (610958)	CytoRegions Not Set				false	arr[hg19] 4q21.22q21.23(83,093,783-84,857,956)x3	chr4:83093783-84857956
LST.OSCHP	3.0	Gain	12	p13.33	1609.868	270	19	IQSEC3, LOC574538, SLC6A12, LOC101929384, SLC6A13, LOC102723544, KDM5A, CCDC77, B4GALNT3, NINJ2, LOC105369595, LOC100049716, WNK1, RAD52, ERC1, LINC00942, FBXL14, WNT5B, MIR3649	11	IQSEC3 (612118), SLC6A12 (603080), SLC6A13 (615097), KDM5A (180202), B4GALNT3 (612220), NINJ2 (607297), WNK1 (605232), RAD52 (600392), ERC1 (607127), FBXL14 (609081), WNT5B (606361)	CytoRegions Not Set				false	arr[hg19] 12p13.33(189,399-1,799,267)x3	chr12:189399-1799267
LST.OSCHP	3.0	Gain	9	p24.1	1151.668	87	15	JAK2, INSL6, INSL4, RLN2, RLN1, PLGRKT, CD274, PDCD1LG2, RIC1, ERMP1, MLANA, KIAA2026, MIR4665, RANBP6, IL33	11	JAK2 (147796), INSL6 (606414), INSL4 (600910), RLN2 (179740), RLN1 (179730), CD274 (605402), PDCD1LG2 (605723), RIC1 (610354), ERMP1 (611156), MLANA (605513), IL33 (608678)	CytoRegions Not Set				false	arr[hg19] 9p24.1(5,114,772-6,266,440)x3	chr9:5114772-6266440
LST.OSCHP	3.0	Gain	4	q12	3887.616	293	26	KDR, SRD5A3, SRD5A3-AS1, TMEM165, CLOCK, PDCL2, NMU, EXOC1L, EXOC1, CEP135, KIAA1211, AASDH, PPAT, PAICS, SRP72, ARL9, THEGL, HOPX, SPINK2, REST, NOA1, POLR2B, IGFBP7, IGFBP7-AS1, LINC02380, LINC02494	19	KDR (191306), SRD5A3 (611715), TMEM165 (614726), CLOCK (601851), PDCL2 (611676), NMU (605103), EXOC1 (607879), CEP135 (611423), AASDH (614365), PPAT (172450), PAICS (172439), SRP72 (602122), ARL9 (612405), HOPX (607275), SPINK2 (605753), REST (600571), NOA1 (614919), POLR2B (180661), IGFBP7 (602867)	CytoRegions Not Set				false	arr[hg19] 4q12q13.1(55,818,908-59,706,524)x3	chr4:55818908-59706524
LST.OSCHP	3.0	Gain	7	q36.1	94.024	18	1	KMT2C	1	KMT2C (606833)	CytoRegions Not Set				false	arr[hg19] 7q36.1(151,925,647-152,019,671)x3	chr7:151925647-152019671
LST.OSCHP	3.0	Gain	4	p13	5707.984	451	22	LIMCH1, PHOX2B, LINC00682, TMEM33, DCAF4L1, SLC30A9, BEND4, LOC105374428, SHISA3, ATP8A1, GRXCR1, LINC02383, LINC02475, KCTD8, YIPF7, GUF1, GNPDA2, GABRG1, GABRA2, COX7B2, GABRA4, GABRB1	13	LIMCH1 (617750), PHOX2B (603851), SLC30A9 (604604), SHISA3 (617325), ATP8A1 (609542), GRXCR1 (613283), GUF1 (617064), GNPDA2 (613222), GABRG1 (137166), GABRA2 (137140), COX7B2 (609811), GABRA4 (137141), GABRB1 (137190)	CytoRegions Not Set				false	arr[hg19] 4p13p12(41,642,888-47,350,872)x3	chr4:41642888-47350872
LST.OSCHP	3.0	Gain	9	p23	1682.738	145	7	LINC00583, NFIB, ZDHHC21, CER1, FREM1, LOC389705, TTC39B	5	NFIB (600728), ZDHHC21 (614605), CER1 (603777), FREM1 (608944), TTC39B (613574)	CytoRegions Not Set				false	arr[hg19] 9p23p22.3(13,530,294-15,213,032)x3	chr9:13530294-15213032
LST.OSCHP	3.0	Gain	5	q21.3	1197.675	81	4	LINC01023, FER, LOC285638, PJA2	1	FER (176942)	CytoRegions Not Set				false	arr[hg19] 5q21.3(107,821,227-109,018,902)x3	chr5:107821227-109018902
LST.OSCHP	3.0	Gain	4	q32.3	13806.597	947	52	LINC01179, LOC101928131, TLL1, SPOCK3, ANXA10, DDX60, DDX60L, PALLD, CBR4, SH3RF1, NEK1, CLCN3, HPF1, LINC02275, MFAP3L, AADAT, LINC01612, LINC02382, LINC02431, MIR6082, LINC02174, LOC441052, GALNTL6, LOC101928314, LOC101930370, GALNT7, HMGB2, SAP30, SCRG1, HAND2, HAND2-AS1, LINC02269, LINC02268, FBXO8, CEP44, MIR4276, HPGD, GLRA3, LOC101928551, ADAM29, GPM6A, LOC101928590, WDR17, SPATA4, ASB5, SPCS3, VEGFC, LINC02509, NEIL3, AGA, LINC01098, LINC01099	30	TLL1 (606742), SPOCK3 (607989), ANXA10 (608008), DDX60 (613974), DDX60L (616725), PALLD (608092), NEK1 (604588), CLCN3 (600580), HPF1 (616614), MFAP3L (616523), AADAT (611754), GALNTL6 (615138), GALNT7 (605005), HMGB2 (163906), SAP30 (603378), SCRG1 (603163), HAND2 (602407), HAND2-AS1 (617240), FBXO8 (605649), MIR4276 (616274), HPGD (601688), GLRA3 (600421), ADAM29 (604778), GPM6A (601275), WDR17 (609005), SPATA4 (609879), ASB5 (615050), VEGFC (601528), NEIL3 (608934), AGA (613228)	CytoRegions Not Set				false	arr[hg19] 4q32.3q34.3(166,458,669-180,265,266)x3	chr4:166458669-180265266
LST.OSCHP	3.0	Gain	5	q33.1	767.459	53	2	LINC01470, GRIA1	1	GRIA1 (138248)	CytoRegions Not Set				false	arr[hg19] 5q33.1q33.2(152,343,942-153,111,401)x3	chr5:152343942-153111401
LST.OSCHP	3.0	Gain	3	p26.3	10179.301	871	69	LINC01986, CHL1-AS2, CHL1, CHL1-AS1, LINC01266, CNTN6, CNTN4, CNTN4-AS2, CNTN4-AS1, IL5RA, TRNT1, CRBN, LOC100130207, LRRN1, SETMAR, SUMF1, ITPR1-DT, ITPR1, EGOT, BHLHE40-AS1, BHLHE40, ARL8B, EDEM1, MIR4790, GRM7-AS3, GRM7, GRM7-AS2, GRM7-AS1, LOC101927394, LMCD1-AS1, LMCD1, LINC00312, SSUH2, CAV3, OXTR, RAD18, SRGAP3, SRGAP3-AS2, SRGAP3-AS3, SRGAP3-AS4, THUMPD3, THUMPD3-AS1, SETD5, LHFPL4, MTMR14, CPNE9, BRPF1, OGG1, CAMK1, TADA3, ARPC4, ARPC4-TTLL3, TTLL3, RPUSD3, CIDEC, JAGN1, IL17RE, IL17RC, CRELD1, PRRT3, PRRT3-AS1, EMC3, EMC3-AS1, CIDECP, FANCD2, FANCD2OS, BRK1, VHL, IRAK2	39	CHL1 (607416), CNTN6 (607220), CNTN4 (607280), IL5RA (147851), TRNT1 (612907), CRBN (609262), SETMAR (609834), SUMF1 (607939), ITPR1 (147265), EGOT (611662), BHLHE40 (604256), ARL8B (616596), EDEM1 (607673), GRM7 (604101), LMCD1 (604859), LINC00312 (610485), SSUH2 (617479), CAV3 (601253), OXTR (167055), RAD18 (605256), SRGAP3 (606525), SETD5 (615743), LHFPL4 (610240), MTMR14 (611089), BRPF1 (602410), OGG1 (601982), CAMK1 (604998), TADA3 (602945), ARPC4 (604226), RPUSD3 (617759), CIDEC (612120), JAGN1 (616012), IL17RE (614995), IL17RC (610925), CRELD1 (607170), FANCD2 (613984), BRK1 (611183), VHL (608537), IRAK2 (603304)	CytoRegions Not Set				false	arr[hg19] 3p26.3p25.3(63,410-10,242,711)x3	chr3:63410-10242711
LST.OSCHP	3.0	Gain	3	p12.2	317.387	18	1	LINC02008	0		CytoRegions Not Set				false	arr[hg19] 3p12.2(81,975,648-82,293,035)x3	chr3:81975648-82293035
LST.OSCHP	3.0	Gain	5	q11.2	608.948	43	3	LINC02108, RAB3C, PDE4D	2	RAB3C (612829), PDE4D (600129)	CytoRegions Not Set				false	arr[hg19] 5q11.2(57,845,243-58,454,191)x3	chr5:57845243-58454191
LST.OSCHP	3.0	Gain	4	p15.33	6341.185	425	35	LINC02270, RAB28, LINC01097, NKX3-2, LINC01096, BOD1L1, MIR5091, LINC01182, LINC01085, LINC00504, CPEB2-DT, CPEB2, LOC101929095, C1QTNF7, CC2D2A, FBXL5, FAM200B, BST1, CD38, FGFBP1, FGFBP2, PROM1, TAPT1, TAPT1-AS1, LDB2, LINC02493, SNORA75B, QDPR, CLRN2, LAP3, MED28, FAM184B, DCAF16, NCAPG, LCORL	18	RAB28 (612994), NKX3-2 (602183), BOD1L1 (616746), CPEB2 (610605), CC2D2A (612013), FBXL5 (605655), BST1 (600387), CD38 (107270), FGFBP1 (607737), FGFBP2 (607713), PROM1 (604365), TAPT1 (612758), LDB2 (603450), QDPR (612676), LAP3 (170250), MED28 (610311), NCAPG (606280), LCORL (611799)	CytoRegions Not Set				false	arr[hg19] 4p15.33p15.31(12,021,138-18,362,323)x3	chr4:12021138-18362323
LST.OSCHP	3.0	Gain	4	q31.23	453.813	31	2	LINC02355, IQCM	0		CytoRegions Not Set				false	arr[hg19] 4q31.23(149,909,950-150,363,763)x3	chr4:149909950-150363763
LST.OSCHP	3.0	Gain	4	q13.3	264.519	20	1	LINC02483	0		CytoRegions Not Set				false	arr[hg19] 4q13.3q21.1(76,120,037-76,384,556)x3	chr4:76120037-76384556
LST.OSCHP	3.0	Gain	6	p21.1	32598.872	2091	174	LINC02537, LINC01512, LOC101929705, C6orf223, MRPL14, TMEM63B, CAPN11, MYMX, SLC29A1, HSP90AB1, SLC35B2, MIR4647, NFKBIE, TMEM151B, TCTE1, AARS2, SPATS1, CDC5L, MIR4642, LOC105375075, SUPT3H, MIR586, RUNX2, CLIC5, ENPP4, ENPP5, RCAN2, LOC101926915, LOC101926898, CYP39A1, SLC25A27, LOC101926934, TDRD6, PLA2G7, ANKRD66, MEP1A, ADGRF5, LOC101926962, ADGRF1, TNFRSF21, CD2AP, ADGRF2, ADGRF4, OPN5, PTCHD4, MUT, CENPQ, GLYATL3, C6orf141, RHAG, CRISP2, CRISP3, PGK2, LOC101927020, LOC101927048, CRISP1, DEFB133, DEFB114, DEFB113, DEFB110, DEFB112, TFAP2D, TFAP2B, PKHD1, LOC101927082, MIR206, LINCMD1, MIR133B, IL17A, IL17F, MCM3, PAQR8, EFHC1, TRAM2, TRAM2-AS1, LOC730101, TMEM14A, GSTA7P, GSTA2, GSTA1, GSTA5, GSTA3, GSTA4, ICK, FBXO9, GCM1, ELOVL5, MIR5685, RPS16P5, GCLC, LOC101927136, LINC01564, KLHL31, LRRC1, LOC101927189, MLIP-IT1, MLIP, MLIP-AS1, TINAG, FAM83B, HCRTR2, GFRAL, HMGCLL1, BMP5, COL21A1, DST, LOC101930010, BEND6, KIAA1586, ZNF451, ZNF451-AS1, BAG2, RAB23, LOC100506188, PRIM2, MIR548U, GUSBP4, LINC00680-GUSBP4, LINC00680, KHDRBS2, MTRNR2L9, LGSN, PTP4A1, PHF3, EYS, LOC441155, SLC25A51P1, LOC102723883, LINC02549, LOC101928307, ADGRB3, LMBRD1, COL19A1, COL9A1, EVADR, LOC105377849, FAM135A, SDHAF4, SMAP1, B3GAT2, OGFRL1, MIR30C2, MIR30A, LINC00472, LINC01626, RIMS1, KCNQ5, KCNQ5-IT1, MIR4282, KCNQ5-AS1, KHDC1L, KHDC1, DPPA5, KHDC3L, OOEP, DDX43, CGAS, MTO1, EEF1A1, SNORD141A, SNORD141B, SLC17A5, LOC101928489, CD109, LOC101928516, COL12A1, SNORD156, COX7A2, TMEM30A, LOC100506804, FILIP1, LOC101928540, MIR4463, SENP6	99	MRPL14 (611827), CAPN11 (604822), SLC29A1 (602193), HSP90AB1 (140572), SLC35B2 (610788), NFKBIE (604548), TCTE1 (186975), AARS2 (612035), CDC5L (602868), SUPT3H (602947), RUNX2 (600211), CLIC5 (607293), ENPP4 (617000), ENPP5 (617001), RCAN2 (604876), CYP39A1 (605994), SLC25A27 (613725), TDRD6 (611200), PLA2G7 (601690), MEP1A (600388), ADGRF1 (617430), TNFRSF21 (605732), CD2AP (604241), ADGRF4 (614268), OPN5 (609042), PTCHD4 (616908), MUT (609058), CENPQ (611506), GLYATL3 (614763), RHAG (180297), CRISP2 (187430), PGK2 (172270), CRISP1 (601193), DEFB114 (615243), TFAP2D (610161), TFAP2B (601601), PKHD1 (606702), MIR206 (611599), LINCMD1 (614933), MIR133B (610946), IL17A (603149), IL17F (606496), MCM3 (602693), PAQR8 (607780), EFHC1 (608815), TRAM2 (608485), TMEM14A (616870), GSTA2 (138360), GSTA1 (138359), GSTA5 (607605), GSTA3 (605449), GSTA4 (605450), ICK (612325), FBXO9 (609091), GCM1 (603715), ELOVL5 (611805), GCLC (606857), KLHL31 (610749), LRRC1 (608195), MLIP (614106), TINAG (606749), HCRTR2 (602393), GFRAL (617837), BMP5 (112265), COL21A1 (610002), DST (113810), ZNF451 (615708), BAG2 (603882), RAB23 (606144), PRIM2 (176636), KHDRBS2 (610487), LGSN (611470), PTP4A1 (601585), PHF3 (607789), EYS (612424), ADGRB3 (602684), LMBRD1 (612625), COL19A1 (120165), COL9A1 (120210), SMAP1 (611372), B3GAT2 (607497), MIR30A (612329), RIMS1 (606629), KCNQ5 (607357), KHDC1 (611688), DPPA5 (611111), KHDC3L (611687), OOEP (611689), DDX43 (606286), CGAS (613973), MTO1 (614667), EEF1A1 (130590), SLC17A5 (604322), CD109 (608859), COL12A1 (120320), COX7A2 (123996), TMEM30A (611028), FILIP1 (607307), SENP6 (605003)	CytoRegions Not Set				false	arr[hg19] 6p21.1q14.1(43,768,329-76,367,201)x3	chr6:43768329-76367201
LST.OSCHP	3.0	Gain	11	p15.4	17816.107	1289	141	LMO1, STK33, TRIM66, RPL27A, SNORA3A, SNORA3B, ST5, LOC102724784, AKIP1, C11orf16, ASCL3, TMEM9B, TMEM9B-AS1, NRIP3, SCUBE2, MIR5691, KRT8P41, DENND5A, TMEM41B, IPO7, SNORA23, LOC644656, ZNF143, WEE1, SWAP70, LOC440028, SBF2-AS1, SBF2, LOC101928008, ADM, CAND1.11, AMPD3, MTRNR2L8, MIR4485, RNF141, MRVI1-AS1, LYVE1, MRVI1, CTR9, EIF4G2, SNORD97, LOC101928053, ZBED5, ZBED5-AS1, GALNT18, CSNK2A3, MIR4299, MIR8070, USP47, DKK3, LINC02547, MICAL2, MIR6124, MICALCL, PARVA, TEAD1, LINC00958, RASSF10, ARNTL, BTBD10, PTH, FAR1, LINC02548, LINC02545, LOC101928132, SPON1, RRAS2, COPB1, PSMA1, PDE3B, CYP2R1, CALCA, CALCB, INSC, LOC102724957, SOX6, MIR6073, C11orf58, PLEKHA7, SNORD147, OR7E14P, RPS13, PIK3C2A, NUCB2, NCR3LG1, KCNJ11, ABCC8, USH1C, OTOG, LOC102723330, MYOD1, KCNC1, SERGEF, TPH1, SAAL1, SAA3P, MRGPRX3, MRGPRX4, LOC494141, SAA4, SAA2-SAA4, SAA2, SAA1, HPS5, GTF2H1, LDHA, LDHC, LDHAL6A, TSG101, UEVLD, SPTY2D1OS, SPTY2D1, TMEM86A, IGSF22, PTPN5, MRGPRX1, MRGPRX2, ZDHHC13, CSRP3, E2F8, NAV2, NAV2-AS5, NAV2-AS4, MIR4486, LOC100126784, MIR4694, NAV2-AS2, DBX1, HTATIP2, PRMT3, SLC6A5, NELL1, ANO5, SLC17A6, LINC01495, FANCF, GAS2, SVIP, CCDC179, MIR8054, LUZP2	86	LMO1 (186921), STK33 (607670), TRIM66 (612000), RPL27A (603637), SNORA3B (611333), ST5 (140750), AKIP1 (609191), ASCL3 (609154), NRIP3 (613125), SCUBE2 (611747), DENND5A (617278), IPO7 (605586), ZNF143 (603433), WEE1 (193525), SWAP70 (604762), SBF2 (607697), ADM (103275), AMPD3 (102772), RNF141 (616641), LYVE1 (605702), MRVI1 (604673), CTR9 (609366), EIF4G2 (602325), ZBED5 (615251), GALNT18 (615136), USP47 (614460), DKK3 (605416), MICAL2 (608881), MICALCL (612355), PARVA (608120), TEAD1 (189967), RASSF10 (614713), ARNTL (602550), BTBD10 (615933), PTH (168450), FAR1 (616107), SPON1 (604989), RRAS2 (600098), COPB1 (600959), PSMA1 (602854), PDE3B (602047), CYP2R1 (608713), CALCA (114130), CALCB (114160), INSC (610668), SOX6 (607257), PLEKHA7 (612686), RPS13 (180476), PIK3C2A (603601), NUCB2 (608020), NCR3LG1 (613714), KCNJ11 (600937), ABCC8 (600509), USH1C (605242), OTOG (604487), MYOD1 (159970), KCNC1 (176258), SERGEF (606051), TPH1 (191060), MRGPRX3 (607229), MRGPRX4 (607230), SAA4 (104752), SAA2 (104751), SAA1 (104750), HPS5 (607521), GTF2H1 (189972), LDHA (150000), LDHC (150150), TSG101 (601387), UEVLD (610985), PTPN5 (176879), MRGPRX1 (607227), MRGPRX2 (607228), ZDHHC13 (612815), CSRP3 (600824), E2F8 (612047), NAV2 (607026), HTATIP2 (605628), PRMT3 (603190), SLC6A5 (604159), NELL1 (602319), ANO5 (608662), SLC17A6 (607563), FANCF (613897), GAS2 (602835), LUZP2 (608178)	CytoRegions Not Set				false	arr[hg19] 11p15.4p14.3(8,228,885-26,044,992)x3	chr11:8228885-26044992
LST.OSCHP	3.0	Gain	7	p11.2	16330.332	758	100	LOC100240728, DKFZp434L192, LOC101928401, LOC401357, LOC100130849, MIR4283-2, MIR4283-1, ZNF479, GUSBP10, LOC105375297, MIR3147, ZNF716, ZNF733P, LOC102724738, LOC100287834, LOC100287704, ZNF722P, LINC01005, ZNF727, ZNF735, ZNF679, ZNF736, YWHAEP1, ZNF680, LOC100128885, LOC641746, ZNF107, MIR6839, ZNF138, ZNF273, ZNF117, ERV3-1-ZNF117, ERV3-1, CCT6P3, SNORA22C, SNORA15B-2, SNORA15B-1, INTS4P1, ZNF92, LOC441242, INTS4P2, CCT6P1, SNORA22, VKORC1L1, GUSB, ASL, CRCP, TPST1, LINC00174, GS1-124K5.4, GS1-124K5.11, KCTD7, LOC100996437, RABGEF1, GTF2IRD1P1, GTF2IP23, LOC644794, TMEM248, SBDS, TYW1, MIR4650-1, MIR4650-2, PMS2P4, STAG3L4, LINC01372, LOC102723427, LOC100507468, AUTS2, GALNT17, MIR3914-1, MIR3914-2, CALN1, TYW1B, SBDSP1, SPDYE7P, POM121, NSUN5P2, TRIM74, LOC541473, LOC100101148, STAG3L1, STAG3L3, PMS2P7, PMS2P5, PMS2P2, SPDYE8P, SPDYE13P, SPDYE15P, SPDYE14P, SPDYE11, SPDYE17, SPDYE10P, GTF2IP4, GTF2IP1, NCF1B, NSUN5, TRIM50, FKBP6, FZD9, BAZ1B	26	ZNF479 (617444), ZNF107 (603989), ZNF138 (604080), ZNF273 (604756), ZNF117 (194624), ERV3-1 (131170), ZNF92 (603974), VKORC1L1 (608838), GUSB (611499), ASL (608310), CRCP (606121), TPST1 (603125), KCTD7 (611725), RABGEF1 (609700), SBDS (607444), TYW1 (611243), AUTS2 (607270), GALNT17 (615137), CALN1 (607176), POM121 (615753), TRIM74 (612550), NSUN5 (615732), TRIM50 (612548), FKBP6 (604839), FZD9 (601766), BAZ1B (605681)	CytoRegions Not Set				false	arr[hg19] 7p11.2q11.23(56,537,520-72,867,852)x3	chr7:56537520-72867852
LST.OSCHP	3.0	Gain	10	q23.31	22216.613	1581	227	LOC101926942, HTR7, RPP30, ANKRD1, XLOC_008559, LOC105378430, LINC00502, NUDT9P1, PCGF5, HECTD2-AS1, HECTD2, PPP1R3C, TNKS2-AS1, TNKS2, FGFBP3, BTAF1, CPEB3, MARCH5, MARK2P9, IDE, KIF11, HHEX, EXOC6, CYP26C1, CYP26A1, MYOF, CEP55, FFAR4, RBP4, PDE6C, FRA10AC1, LGI1, SLC35G1, PIPSL, PLCE1, PLCE1-AS2, PLCE1-AS1, NOC3L, TBC1D12, HELLS, CYP2C18, CYP2C19, CYP2C9, CYP2C8, ACSM6, PDLIM1, SORBS1, ALDH18A1, TCTN3, ENTPD1, ENTPD1-AS1, CC2D2B, CCNJ, MIR3157, ZNF518A, BLNK, DNTT, OPALIN, TLL2, TM9SF3, PIK3AP1, MIR607, LOC102723665, LCOR, SLIT1, SLIT1-AS1, ARHGAP19-SLIT1, ARHGAP19, FRAT1, FRAT2, RRP12, PGAM1, EXOSC1, ZDHHC16, MMS19, UBTD1, ANKRD2, HOGA1, C10orf62, MORN4, PI4K2A, AVPI1, MARVELD1, ZFYVE27, SFRP5, LINC00866, GOLGA7B, CRTAC1, R3HCC1L, LOXL4, PYROXD2, MIR1287, HPS1, MIR4685, LOC101927278, HPSE2, MIR6507, CNNM1, GOT1, LINC01475, NKX2-3, SLC25A28, ENTPD7, COX15, CUTC, ABCC2, DNMBP, DNMBP-AS1, CPN1, ERLIN1, CHUK, CWF19L1, SNORA12, BLOC1S2, PKD2L1, SCD, OLMALINC, WNT8B, SEC31B, NDUFB8, HIF1AN, PAX2, SLF2, SEMA4G, MIR608, MRPL43, TWNK, LZTS2, PDZD7, SFXN3, KAZALD1, TLX1NB, TLX1, LINC01514, LBX1, LBX1-AS1, LOC101927419, BTRC, POLL, DPCD, MIR3158-2, MIR3158-1, FBXW4, FGF8, NPM3, OGA, KCNIP2-AS1, KCNIP2, ARMH3, HPS6, LDB1, PPRC1, NOLC1, ELOVL3, PITX3, GBF1, NFKB2, PSD, FBXL15, CUEDC2, MIR146B, RPARP-AS1, C10orf95, MFSD13A, ACTR1A, SUFU, TRIM8, ARL3, SFXN2, WBP1L, CYP17A1, BORCS7, BORCS7-ASMT, AS3MT, CNNM2, NT5C2, RPEL1, INA, PCGF6, TAF5, ATP5MD, MIR1307, PDCD11, CALHM2, CALHM1, CALHM3, NEURL1-AS1, NEURL1, SH3PXD2A, SH3PXD2A-AS1, STN1, SLK, COL17A1, MIR936, SFR1, CFAP43, MIR609, GSTO1, MIR4482, GSTO2, ITPRIP, LOC101927472, CFAP58-DT, CFAP58, LOC101927523, SORCS3, SORCS3-AS1, LOC101927549, LOC105378470, SORCS1, LINC01435, XPNPEP1, ADD3-AS1, ADD3, MXI1, SMNDC1, DUSP5, SMC3, RBM20, PDCD4-AS1, PDCD4, MIR4680, BBIP1, SHOC2, RPL13AP6, ADRA2A, GPAM	159	HTR7 (182137), RPP30 (606115), ANKRD1 (609599), PCGF5 (617407), PPP1R3C (602999), TNKS2 (607128), BTAF1 (605191), CPEB3 (610606), MARCH5 (610637), IDE (146680), KIF11 (148760), HHEX (604420), EXOC6 (609672), CYP26C1 (608428), CYP26A1 (602239), MYOF (604603), CEP55 (610000), FFAR4 (609044), RBP4 (180250), PDE6C (600827), FRA10AC1 (608866), LGI1 (604619), SLC35G1 (617167), PLCE1 (608414), NOC3L (610769), HELLS (603946), CYP2C18 (601131), CYP2C19 (124020), CYP2C9 (601130), CYP2C8 (601129), PDLIM1 (605900), SORBS1 (605264), ALDH18A1 (138250), TCTN3 (613847), ENTPD1 (601752), ZNF518A (617733), BLNK (604515), DNTT (187410), OPALIN (617200), TLL2 (606743), TM9SF3 (616872), PIK3AP1 (607942), LCOR (607698), SLIT1 (603742), ARHGAP19 (611587), FRAT1 (602503), FRAT2 (605006), RRP12 (617723), PGAM1 (172250), EXOSC1 (606493), ZDHHC16 (616750), MMS19 (614777), UBTD1 (616388), ANKRD2 (610734), HOGA1 (613597), MORN4 (617736), PI4K2A (609763), MARVELD1 (616970), ZFYVE27 (610243), SFRP5 (604158), GOLGA7B (614189), CRTAC1 (606276), LOXL4 (607318), PYROXD2 (617889), HPS1 (604982), HPSE2 (613469), CNNM1 (607802), GOT1 (138180), NKX2-3 (606727), SLC25A28 (609767), ENTPD7 (616753), COX15 (603646), CUTC (610101), ABCC2 (601107), DNMBP (611282), CPN1 (603103), ERLIN1 (611604), CHUK (600664), CWF19L1 (616120), SNORA12 (611330), BLOC1S2 (609768), PKD2L1 (604532), SCD (604031), OLMALINC (616240), WNT8B (601396), SEC31B (610258), NDUFB8 (602140), HIF1AN (606615), PAX2 (167409), SLF2 (610348), MRPL43 (611848), TWNK (606075), LZTS2 (610454), PDZD7 (612971), SFXN3 (615571), KAZALD1 (609208), TLX1NB (612734), TLX1 (186770), LBX1 (604255), BTRC (603482), POLL (606343), DPCD (616467), FBXW4 (608071), FGF8 (600483), NPM3 (606456), OGA (604039), KCNIP2 (604661), HPS6 (607522), LDB1 (603451), PPRC1 (617462), NOLC1 (602394), ELOVL3 (611815), PITX3 (602669), GBF1 (603698), NFKB2 (164012), PSD (602327), FBXL15 (610287), CUEDC2 (614142), MIR146B (610567), ACTR1A (605143), SUFU (607035), TRIM8 (606125), ARL3 (604695), SFXN2 (615570), WBP1L (611129), CYP17A1 (609300), BORCS7 (616600), AS3MT (611806), CNNM2 (607803), NT5C2 (600417), INA (605338), PCGF6 (607816), TAF5 (601787), ATP5MD (615204), PDCD11 (612333), CALHM2 (612235), CALHM1 (612234), NEURL1 (603804), STN1 (613128), SLK (616563), COL17A1 (113811), SFR1 (616527), CFAP43 (617558), GSTO1 (605482), GSTO2 (612314), SORCS3 (606285), SORCS1 (606283), XPNPEP1 (602443), ADD3 (601568), MXI1 (600020), SMNDC1 (603519), DUSP5 (603069), SMC3 (606062), RBM20 (613171), PDCD4 (608610), BBIP1 (613605), SHOC2 (602775), ADRA2A (104210), GPAM (602395)	CytoRegions Not Set				false	arr[hg19] 10q23.31q25.2(91,814,107-114,030,720)x3	chr10:91814107-114030720
LST.OSCHP	3.0	Gain	7	p14.2	8104.505	664	61	LOC101928618, EEPD1, KIAA0895, ANLN, AOAH, AOAH-IT1, ELMO1, MIR1200, ELMO1-AS1, GPR141, NME8, SFRP4, EPDR1, STARD3NL, TARP, TRG-AS1, AMPH, FAM183BP, VPS41, POU6F2, POU6F2-AS2, SNORA20B, POU6F2-AS1, YAE1, RALA, LINC00265, CDK13, MPLKIP, SUGCT, LINC01450, LINC01449, INHBA, INHBA-AS1, GLI3, LINC01448, C7orf25, PSMA2, MRPL32, HECW1, HECW1-IT1, MIR3943, LUARIS, STK17A, COA1, BLVRA, MRPS24, URGCP-MRPS24, URGCP, UBE2D4, POLR2J4, SPDYE1, RASA4CP, LINC00957, DBNL, MIR6837, PGAM2, POLM, MIR6838, AEBP1, MIR4649, POLD2	32	EEPD1 (617192), ANLN (616027), AOAH (102593), ELMO1 (606420), GPR141 (609045), NME8 (607421), SFRP4 (606570), STARD3NL (611759),  (609642), AMPH (600418), VPS41 (605485), POU6F2 (609062), RALA (179550), CDK13 (603309), MPLKIP (609188), SUGCT (609187), INHBA (147290), GLI3 (165240), PSMA2 (176842), MRPL32 (611839), HECW1 (610384), STK17A (604726), COA1 (614769), BLVRA (109750), MRPS24 (611986), URGCP (610337), SPDYE1 (617623), DBNL (610106), PGAM2 (612931), POLM (606344), AEBP1 (602981), POLD2 (600815)	CytoRegions Not Set				false	arr[hg19] 7p14.2p13(36,056,610-44,161,115)x3	chr7:36056610-44161115
LST.OSCHP	3.0	Gain	4	p15.1	1742.156	115	2	LOC101928622, LINC02484	0		CytoRegions Not Set				false	arr[hg19] 4p15.1(33,673,244-35,415,400)x3	chr4:33673244-35415400
LST.OSCHP	3.0	Gain	7	p22.3	343.786	21	4	LOC102723672, LOC100507642, LOC105375115, FAM20C	1	FAM20C (611061)	CytoRegions Not Set				false	arr[hg19] 7p22.3(41,420-385,206)x3	chr7:41420-385206
LST.OSCHP	3.0	Gain	6	p25.3	10763.674	786	94	LOC285766, DUSP22, IRF4, EXOC2, HUS1B, LOC101927691, LINC01622, FOXQ1, FOXF2, MIR6720, FOXCUT, FOXC1, GMDS, GMDS-DT, LINC01600, LINC02521, MYLK4, WRNIP1, SERPINB1, MIR4645, SERPINB9P1, LOC101927730, SERPINB9, SERPINB6, LINC01011, NQO2, HTATSF1P2, LOC101927759, RIPK1, BPHL, TUBB2A, LINC02525, TUBB2B, LOC100422781, PSMG4, SLC22A23, LOC643327, PXDC1, FAM50B, PRPF4B, FAM217A, C6orf201, ECI2, LOC100507506, LOC102724096, LINC02533, KU-MEL-3, CDYL, RPP40, LYRM4-AS1, LYRM4, PPP1R3G, MIR3691, FARS2, LOC101927972, LOC101927950, NRN1, F13A1, MIR7853, MIR5683, LY86-AS1, LY86, RREB1, SSR1, CAGE1, RIOK1, DSP, SNRNP48, BMP6, BLOC1S5-TXNDC5, TXNDC5, PIP5K1P1, BLOC1S5, EEF1E1-BLOC1S5, EEF1E1, SCARNA27, SLC35B3, LOC100506207, HULC, TFAP2A, TFAP2A-AS2, TFAP2A-AS1, LINC00518, MIR5689HG, MIR5689, GCNT2, C6orf52, PAK1IP1, TMEM14C, TMEM14B, MAK, GCM2, SYCP2L, LOC101928191	49	DUSP22 (616778), IRF4 (601900), EXOC2 (615329), HUS1B (609713), FOXQ1 (612788), FOXF2 (603250), FOXCUT (615976), FOXC1 (601090), GMDS (602884), WRNIP1 (608196), SERPINB1 (130135), SERPINB9 (601799), SERPINB6 (173321), NQO2 (160998), RIPK1 (603453), BPHL (603156), TUBB2A (615101), TUBB2B (612850), PSMG4 (617550), SLC22A23 (611697), FAM50B (614686), PRPF4B (602338), ECI2 (608024), CDYL (603778), RPP40 (606117), LYRM4 (613311), FARS2 (611592), NRN1 (607409), F13A1 (134570), LY86 (605241), RREB1 (602209), SSR1 (600868), CAGE1 (608304), RIOK1 (617753), DSP (125647), BMP6 (112266), TXNDC5 (616412), BLOC1S5 (607289), EEF1E1 (609206), SLC35B3 (610845), HULC (612210), TFAP2A (107580), TFAP2A-AS2 (617136), GCNT2 (600429), PAK1IP1 (607811), TMEM14C (615318), MAK (154235), GCM2 (603716), SYCP2L (616799)	CytoRegions Not Set				false	arr[hg19] 6p25.3p24.2(204,908-10,968,582)x3	chr6:204908-10968582
LST.OSCHP	3.0	Gain	4	q34.3	3227.039	227	33	LOC90768, MIR1305, TENM3, DCTD, FAM92A1P2, WWC2-AS2, WWC2, WWC2-AS1, CLDN22, CLDN24, CDKN2AIP, LOC389247, ING2, RWDD4, TRAPPC11, STOX2, ENPP6, LINC02363, LINC02362, IRF2, LINC02427, LINC02365, CASP3, PRIMPOL, CENPU, ACSL1, SLED1, MIR3945HG, MIR3945, LINC01093, MIR4455, HELT, LINC02436	13	TENM3 (610083), DCTD (607638), CDKN2AIP (615914), ING2 (604215), TRAPPC11 (614138), STOX2 (617359), ENPP6 (616983), IRF2 (147576), CASP3 (600636), PRIMPOL (615421), CENPU (611511), ACSL1 (152425), HELT (617546)	CytoRegions Not Set				false	arr[hg19] 4q34.3q35.1(182,834,127-186,061,166)x3	chr4:182834127-186061166
LST.OSCHP	3.0	Gain	11	p15.5	275.24	23	15	LSP1, MIR7847, LINC01150, TNNT3, MRPL23, SNORD131, MRPL23-AS1, LINC01219, HOTS, H19, MIR675, IGF2, INS-IGF2, MIR483, IGF2-AS	7	LSP1 (153432), TNNT3 (600692), MRPL23 (600789), H19 (103280), MIR675 (615509), IGF2 (147470), IGF2-AS (610146)	CytoRegions Not Set				false	arr[hg19] 11p15.5(1,889,248-2,164,488)x3	chr11:1889248-2164488
LST.OSCHP	3.0	Gain	6	q15	20910.952	1610	93	MAP3K7, MIR4643, CASC6, EPHA7, TSG1, MANEA-DT, MANEA, FUT9, UFL1, FHL5, GPR63, NDUFAF4, KLHL32, MIR548H3, MMS22L, LOC101927314, MIR2113, PNKY, POU3F2, FBXL4, MIR548AI, FAXC, COQ3, PNISR, LOC101927365, USP45, TSTD3, CCNC, PRDM13, MCHR2, MCHR2-AS1, SIM1, ASCC3, GRIK2, HACE1, LIN28B-AS1, LIN28B, BVES, BVES-AS1, POPDC3, PREP, PRDM1, ATG5, LOC105377924, CRYBG1, RTN4IP1, QRSL1, LINC02526, LINC02532, MIR587, C6orf203, BEND3, PDSS2, SOBP, SCML4, SEC63, OSTM1, OSTM1-AS1, NR2E1, SNX3, AFG1L, FOXO3, LINC00222, ARMC2, ARMC2-AS1, SESN1, CEP57L1, CCDC162P, CD164, PPIL6, SMPD2, MICAL1, ZBTB24, AK9, FIG4, GPR6, WASF1, CDC40, METTL24, DDO, SLC22A16, CDK19, AMD1, SNORA40C, GTF3C6, RPF2, GSTM2P1, SLC16A10, SNORD166, MFSD4B, REV3L, TRAF3IP2-AS1, TRAF3IP2	58	MAP3K7 (602614), EPHA7 (602190), MANEA (612327), FUT9 (606865), UFL1 (613372), FHL5 (605126), GPR63 (606915), NDUFAF4 (611776), MMS22L (615614),  (616328), POU3F2 (600494), FBXL4 (605654), COQ3 (605196), PNISR (616653), CCNC (123838), PRDM13 (616741), MCHR2 (606111), SIM1 (603128), ASCC3 (614217), GRIK2 (138244), HACE1 (610876), LIN28B (611044), BVES (604577), POPDC3 (605824), PREP (600400), PRDM1 (603423), ATG5 (604261), CRYBG1 (601797), RTN4IP1 (610502), QRSL1 (617209), BEND3 (616374), PDSS2 (610564), SOBP (613667), SEC63 (608648), OSTM1 (607649), NR2E1 (603849), SNX3 (605930), AFG1L (617469), FOXO3 (602681), SESN1 (606103), CD164 (603356), SMPD2 (603498), MICAL1 (607129), ZBTB24 (614064), AK9 (615358), FIG4 (609390), GPR6 (600553), WASF1 (605035), CDC40 (605585), DDO (124450), SLC22A16 (608276), CDK19 (614720), AMD1 (180980), GTF3C6 (611784), SLC16A10 (607550), MFSD4B (617331), REV3L (602776), TRAF3IP2 (607043)	CytoRegions Not Set				false	arr[hg19] 6q15q21(91,031,204-111,942,156)x3	chr6:91031204-111942156
LST.OSCHP	3.0	Gain	18	q21.2	3315.794	213	22	MBD2, SNORA37, POLI, STARD6, C18orf54, DYNAP, RAB27B, CCDC68, LINC01929, TCF4, TCF4-AS1, MIR4529, LINC01415, LINC01416, LOC642484, LINC01905, LINC01539, TXNL1, WDR7, LINC-ROR, BOD1L2, LINC02565	10	MBD2 (603547), POLI (605252), STARD6 (607051), C18orf54 (613258), RAB27B (603869), CCDC68 (616909), TCF4 (602272), TXNL1 (603049), WDR7 (613473), LINC-ROR (615173)	CytoRegions Not Set				false	arr[hg19] 18q21.2q21.31(51,641,937-54,957,731)x3	chr18:51641937-54957731
LST.OSCHP	3.0	Gain	6	p21.33	649.533	124	79	MCCD1, DDX39B, ATP6V1G2-DDX39B, SNORD117, SNORD84, DDX39B-AS1, ATP6V1G2, NFKBIL1, LOC100287329, LTA, TNF, LTB, LST1, NCR3, AIF1, PRRC2A, SNORA38, MIR6832, BAG6, APOM, C6orf47, GPANK1, CSNK2B, LY6G5B, LY6G5C, ABHD16A, MIR4646, LY6G6F, LY6G6F-LY6G6D, LY6G6E, LY6G6D, LY6G6C, MPIG6B, DDAH2, CLIC1, MSH5, MSH5-SAPCD1, SAPCD1, SAPCD1-AS1, VWA7, VARS, LSM2, HSPA1L, HSPA1A, HSPA1B, C6orf48, SNORD48, SNORD52, NEU1, SLC44A4, EHMT2, C2, ZBTB12, C2-AS1, CFB, NELFE, MIR1236, SKIV2L, DXO, STK19, C4A, LOC110384692, C4B_2, C4B, CYP21A2, CYP21A1P, TNXA, TNXB, ATF6B, FKBPL, PRRT1, LOC100507547, PPT2, PPT2-EGFL8, EGFL8, AGPAT1, MIR6721, RNF5, RNF5P1	52	MCCD1 (609624), DDX39B (142560), ATP6V1G2 (606853), NFKBIL1 (601022), LTA (153440), TNF (191160), LTB (600978), LST1 (109170), NCR3 (611550), AIF1 (601833), PRRC2A (142580), BAG6 (142590), APOM (606907), GPANK1 (142610), CSNK2B (115441), LY6G5B (610433), LY6G5C (610434), ABHD16A (142620), LY6G6F (611404), LY6G6E (610437), LY6G6D (606038), LY6G6C (610435), MPIG6B (606520), DDAH2 (604744), CLIC1 (602872), MSH5 (603382), VWA7 (609693), VARS (192150), LSM2 (607282), HSPA1L (140559), HSPA1A (140550), HSPA1B (603012), C6orf48 (605447), NEU1 (608272), SLC44A4 (606107), EHMT2 (604599), C2 (613927), CFB (138470), NELFE (154040), SKIV2L (600478), DXO (605996), STK19 (604977), C4A (120810), C4B (120820), CYP21A2 (613815), TNXB (600985), ATF6B (600984), FKBPL (617076), PPT2 (603298), EGFL8 (609897), AGPAT1 (603099), RNF5 (602677)	CytoRegions Not Set				false	arr[hg19] 6p21.33p21.32(31,497,705-32,147,238)x3	chr6:31497705-32147238
LST.OSCHP	3.0	Gain	6	p21.33	265.244	39	15	MDC1, TUBB, FLOT1, IER3-AS1, IER3, HCG20, LINC00243, LINC02570, DDR1, MIR4640, GTF2H4, VARS2, SFTA2, MUCL3, HCG21	8	MDC1 (607593), TUBB (191130), FLOT1 (606998), IER3 (602996), DDR1 (600408), GTF2H4 (601760), VARS2 (612802), MUCL3 (613928)	CytoRegions Not Set				false	arr[hg19] 6p21.33(30,681,979-30,947,223)x3	chr6:30681979-30947223
LST.OSCHP	3.0	Gain	7	q31.2	18861.725	1630	146	MET, CAPZA2, ST7-AS1, ST7, ST7-OT4, MIR6132, ST7-AS2, ST7-OT3, WNT2, ASZ1, CFTR, CFTR-AS1, CTTNBP2, LSM8, ANKRD7, LINC02476, KCND2, TSPAN12, ING3, CPED1, WNT16, FAM3C, PTPRZ1, AASS, FEZF1, FEZF1-AS1, CADPS2, RNF133, RNF148, TAS2R16, SLC13A1, IQUB, NDUFA5, ASB15, LOC102724555, LMOD2, WASL, RNU6-2, HYALP1, HYAL4, SPAM1, LOC105375483, TMEM229A, LOC101928211, GPR37, C7orf77, POT1, POT1-AS1, LOC101928283, LOC101928254, GRM8, MIR592, LOC101928333, ZNF800, LOC100506682, GCC1, ARF5, FSCN3, PAX4, SND1, SND1-IT1, LRRC4, MIR593, MIR129-1, LEP, MGC27345, RBM28, PRRT4, LOC107986845, IMPDH1, HILPDA, METTL2B, LINC01000, FAM71F2, FAM71F1, CALU, OPN1SW, CCDC136, FLNC, FLNC-AS1, ATP6V1F, ATP6V1FNB, KCP, IRF5, TNPO3, TPI1P2, LOC407835, TSPAN33, SMO, AHCYL2, STRIP2, SMKR1, NRF1, MIR182, MIR96, MIR183, UBE2H, ZC3HC1, KLHDC10, LOC100128325, TMEM209, SSMEM1, CPA2, CPA4, CPA5, LOC105375504, CPA1, CEP41, MEST, MESTIT1, MIR335, COPG2, TSGA13, KLF14, MIR29A, MIR29B1, LINC-PINT, LINC00513, MKLN1, MKLN1-AS, PODXL, LOC101928782, PLXNA4, LOC101928807, FLJ40288, LOC100506937, CHCHD3, MIR3654, LOC105375512, EXOC4, MIR6133, LOC101928861, LRGUK, SLC35B4, AKR1B1, AKR1B10, AKR1B15, BPGM, CALD1, AGBL3, CYREN, TMEM140, WDR91, MIR6509, STRA8, CNOT4	86	MET (164860), CAPZA2 (601571), ST7 (600833), WNT2 (147870), ASZ1 (605797), CFTR (602421), CTTNBP2 (609772), LSM8 (607288), ANKRD7 (610731), KCND2 (605410), TSPAN12 (613138), ING3 (607493), WNT16 (606267), FAM3C (608618), PTPRZ1 (176891), AASS (605113), FEZF1 (613301), CADPS2 (609978), TAS2R16 (604867), SLC13A1 (606193), NDUFA5 (601677), LMOD2 (608006), WASL (605056), HYAL4 (604510), SPAM1 (600930), GPR37 (602583), POT1 (606478), GRM8 (601116), GCC1 (607418), ARF5 (103188), FSCN3 (615800), PAX4 (167413), SND1 (602181), LRRC4 (610486), LEP (164160), RBM28 (612074), IMPDH1 (146690), HILPDA (617905), METTL2B (607846), CALU (603420), OPN1SW (613522), CCDC136 (611902), FLNC (102565), ATP6V1F (607160), KCP (609344), IRF5 (607218), TNPO3 (610032), TSPAN33 (610120), SMO (601500), AHCYL2 (616520), STRIP2 (617919), NRF1 (600879), MIR182 (611607), MIR96 (611606), MIR183 (611608), UBE2H (601082), KLHDC10 (615152), CPA2 (600688), CPA4 (607635), CPA5 (609561), CPA1 (114850), CEP41 (610523), MEST (601029), MESTIT1 (607794), MIR335 (611768), COPG2 (604355), KLF14 (609393), MIR29A (610782), MIR29B1 (610783), MKLN1 (605623), PODXL (602632), PLXNA4 (604280), CHCHD3 (613748), EXOC4 (608185), LRGUK (616478), SLC35B4 (610923), AKR1B1 (103880), AKR1B10 (604707), AKR1B15 (616336), BPGM (613896), CALD1 (114213), AGBL3 (617346), CYREN (616980), WDR91 (616303), STRA8 (609987), CNOT4 (604911)	CytoRegions Not Set				false	arr[hg19] 7q31.2q33(116,303,550-135,165,275)x3	chr7:116303550-135165275
LST.OSCHP	3.0	Gain	7	p22.3	3530.628	254	36	MICALL2, INTS1, MAFK, LOC100128653, TMEM184A, PSMG3, PSMG3-AS1, TFAMP1, ELFN1, ELFN1-AS1, MAD1L1, MIR4655, SNORA114, MRM2, NUDT1, SNX8, MIR6836, EIF3B, CHST12, GRIFIN, LFNG, MIR4648, BRAT1, IQCE, TTYH3, AMZ1, GNA12, CARD11, LOC100129603, SDK1, FOXK1, AP5Z1, MIR4656, RADIL, SNORD165, PAPOLB	22	INTS1 (611345), MAFK (600197), PSMG3 (617528), ELFN1 (614964), MAD1L1 (602686), MRM2 (606906), NUDT1 (600312), SNX8 (614905), EIF3B (603917), CHST12 (610129), LFNG (602576), BRAT1 (614506), IQCE (617631), TTYH3 (608919), AMZ1 (615168), GNA12 (604394), CARD11 (607210), SDK1 (607216), FOXK1 (616302), AP5Z1 (613653), RADIL (611491), PAPOLB (607436)	CytoRegions Not Set				false	arr[hg19] 7p22.3p22.1(1,379,355-4,909,983)x3	chr7:1379355-4909983
LST.OSCHP	3.0	Gain	5	q14.3	1789.898	121	11	MIR3660, LINC01339, CETN3, LOC731157, MBLAC2, POLR3G, LYSMD3, ADGRV1, LUCAT1, ARRDC3, ARRDC3-AS1	4	CETN3 (602907), POLR3G (617456), ADGRV1 (602851), ARRDC3 (612464)	CytoRegions Not Set				false	arr[hg19] 5q14.3(88,934,700-90,724,598)x3	chr5:88934700-90724598
LST.OSCHP	3.0	Gain	5	p15.33	70.102	29	3	MIR4457, CLPTM1L, LINC01511	1	CLPTM1L (612585)	CytoRegions Not Set				false	arr[hg19] 5p15.33(1,309,167-1,379,269)x3	chr5:1309167-1379269
LST.OSCHP	3.0	Gain	4	p16.1	959.456	64	2	MIR572, HS3ST1	1	HS3ST1 (603244)	CytoRegions Not Set				false	arr[hg19] 4p16.1p15.33(10,728,758-11,688,214)x3	chr4:10728758-11688214
LST.OSCHP	3.0	Gain	20	p12.2	13301.66	1611	92	MKKS, SLX4IP, JAG1, MIR6870, LINC01752, LOC101929413, C20orf187, LOC339593, LINC00687, BTBD3, LINC01722, LOC102606466, LINC01723, SPTLC3, ISM1, ISM1-AS1, TASP1, ESF1, NDUFAF5, SEL1L2, MACROD2, FLRT3, MACROD2-IT1, MACROD2-AS1, LOC613266, KIF16B, SNRPB2, OTOR, PCSK2, BFSP1, DSTN, RRBP1, BANF2, SNX5, SNORD17, MGME1, OVOL2, PET117, KAT14, ZNF133, LINC00851, DZANK1, POLR3F, MIR3192, RBBP9, SEC23B, SMIM26, DTD1, LOC101929526, LINC00652, LOC100270804, C20orf78, SCP2D1, SLC24A3, LOC100130264, RIN2, NAA20, CRNKL1, CFAP61, INSM1, RALGAPA2, LINC00237, KIZ, KIZ-AS1, XRN2, NKX2-4, NKX2-2, LINC01727, LINC01726, PAX1, LINC01432, LINC01427, LOC284788, LINC00261, FOXA2, LINC01384, LINC01747, SSTR4, THBD, CD93, LINC00656, NXT1, LINC01431, GZF1, NAPB, CSTL1, CST11, CST8, CST13P, CST9L, CST9, CST3	50	MKKS (604896), SLX4IP (615958), JAG1 (601920), BTBD3 (615566), SPTLC3 (611120), ISM1 (615793), TASP1 (608270), NDUFAF5 (612360), SEL1L2 (614289), MACROD2 (611567), FLRT3 (604808), SNRPB2 (603520), OTOR (606067), PCSK2 (162151), BFSP1 (603307), DSTN (609114), RRBP1 (601418), SNX5 (605937), MGME1 (615076), OVOL2 (616441), PET117 (614771), KAT14 (617501), ZNF133 (604075), POLR3F (617455), RBBP9 (602908), SEC23B (610512), DTD1 (610996), SLC24A3 (609839), RIN2 (610222), NAA20 (610833), CRNKL1 (610952), INSM1 (600010), LINC00237 (614992), KIZ (615757), XRN2 (608851), NKX2-4 (607808), NKX2-2 (604612), PAX1 (167411), FOXA2 (600288), SSTR4 (182454), THBD (188040), CD93 (120577), NXT1 (605811), GZF1 (613842), NAPB (611270), CST11 (609731), CST8 (608683), CST9L (616536), CST9 (616543), CST3 (604312)	CytoRegions Not Set				false	arr[hg19] 20p12.2p11.21(10,324,086-23,625,746)x3	chr20:10324086-23625746
LST.OSCHP	3.0	Gain	7	q33	264.297	19	2	MTPN, LUZP6	2	MTPN (606484), LUZP6 (611050)	CytoRegions Not Set				false	arr[hg19] 7q33(135,466,739-135,731,036)x3	chr7:135466739-135731036
LST.OSCHP	3.0	Gain	7	q34	7422.334	543	83	MTRNR2L6, PRSS1, PRSS3P2, EPHB6, TRPV6, TRPV5, LLCFC1, KEL, OR9A2, OR6V1, OR6W1P, PIP, TAS2R39, TAS2R40, LOC105375545, GSTK1, TMEM139, CASP2, CLCN1, FAM131B, LOC100507507, ZYX, MIR6892, EPHA1, EPHA1-AS1, TAS2R60, TAS2R41, OR10AC1, CTAGE15, TCAF2, TCAF2P1, CTAGE6, LOC154761, TCAF1, OR2F2, OR2F1, OR6B1, OR2A5, OR2A25, OR2A12, OR2A2, OR2A14, CTAGE4, ARHGEF35, LOC101928605, OR2A1-AS1, OR2A1, OR2A42, OR2A9P, OR2A20P, OR2A7, ARHGEF34P, CTAGE8, ARHGEF5, NOBOX, TPK1, CNTNAP2, LOC101928700, MIR548F4, LOC105375556, MIR548T, C7orf33, CUL1, EZH2, GHET1, PDIA4, ZNF786, ZNF425, ZNF398, ZNF282, ZNF212, ZNF783, LOC155060, ZNF777, ZNF746, ZNF767P, KRBA1, ZNF467, SSPO, ZNF862, ATP6V0E2-AS1, ATP6V0E2, ACTR3C	31	PRSS1 (276000), EPHB6 (602757), TRPV6 (606680), TRPV5 (606679), KEL (613883), PIP (176720), TAS2R40 (613964), GSTK1 (602321), TMEM139 (616524), CASP2 (600639), CLCN1 (118425), ZYX (602002), EPHA1 (179610), TAS2R60 (613968), TAS2R41 (613965), TCAF2 (616252), TCAF1 (616251), OR2F1 (608497), CTAGE4 (608910), ARHGEF5 (600888), NOBOX (610934), TPK1 (606370), CNTNAP2 (604569), CUL1 (603134), EZH2 (601573), ZNF282 (603397), ZNF212 (602386), ZNF746 (613914), ZNF467 (614040), SSPO (617356), ATP6V0E2 (611019)	CytoRegions Not Set				false	arr[hg19] 7q34q36.1(142,163,045-149,585,379)x3	chr7:142163045-149585379
LST.OSCHP	3.0	Gain	6	q14.1	11191.485	801	46	MYO6, IMPG1, LINC02540, HTR1B, MEI4, IRAK1BP1, PHIP, HMGN3, HMGN3-AS1, LCAL1, LCA5, SH3BGRL2, RNY4, LINC01621, ELOVL4, TTK, BCKDHB, TENT5A, LINC01526, LINC02542, IBTK, TPBG, UBE3D, DOP1A, PGM3, RWDD2A, ME1, PRSS35, SNAP91, LOC105377879, RIPPLY2, CYB5R4, MRAP2, CEP162, LINC01611, TBX18-AS1, TBX18, LINC02535, NT5E, SNX14, SYNCRIP, SNHG5, SNORD50A, SNORD50B, HTR1E, CGA	33	MYO6 (600970), IMPG1 (602870), HTR1B (182131), IRAK1BP1 (615375), PHIP (612870), HMGN3 (604502), LCA5 (611408), SH3BGRL2 (615678), RNY4 (601823), ELOVL4 (605512), TTK (604092), BCKDHB (248611), TENT5A (611357), IBTK (606457), TPBG (190920), UBE3D (612495), DOP1A (616823), PGM3 (172100), ME1 (154250), SNAP91 (607923), RIPPLY2 (609891), CYB5R4 (608343), MRAP2 (615410), CEP162 (610201), TBX18 (604613), NT5E (129190), SNX14 (616105), SYNCRIP (616686), SNHG5 (613263), SNORD50A (613117), SNORD50B (613264), HTR1E (182132), CGA (118850)	CytoRegions Not Set				false	arr[hg19] 6q14.1q14.3(76,617,917-87,809,402)x3	chr6:76617917-87809402
LST.OSCHP	3.0	Gain	1	q21.2	8220.417	565	281	NBPF19, MIR5087, MIR6077, LOC100132057, LOC100996740, PPIAL4C, PPIAL4A, RNVU1-19, NBPF26, PPIAL4F, PPIAL4E, PPIAL4D, NBPF14, NBPF9, NBPF25P, NBPF15, LOC101927429, DRD5P2, LOC101060524, LSP1P5, FAM231D, LOC644634, LOC388692, LOC100996741, FCGR1CP, HIST2H3PS2, LINC00623, LINC00869, LINC01145, RNVU1-20, LOC101929798, LOC100996721, HIST2H2BF, FCGR1A, HIST2H3D, HIST2H4B, HIST2H4A, HIST2H3C, HIST2H3A, HIST2H2AA4, HIST2H2AA3, HIST2H2BC, HIST2H2BE, HIST2H2AC, HIST2H2AB, BOLA1, SV2A, SF3B4, MTMR11, OTUD7B, VPS45, PLEKHO1, LOC105371433, ANP32E, CA14, SNORD13C, APH1A, C1orf54, CIART, MRPS21, PRPF3, RPRD2, TARS2, MIR6878, ECM1, FALEC, ADAMTSL4, MIR4257, ADAMTSL4-AS1, MCL1, ENSA, GOLPH3L, HORMAD1, CTSS, CTSK, ARNT, CTXND2, SETDB1, CERS2, ANXA9, MINDY1, PRUNE1, BNIPL, C1orf56, CDC42SE1, MLLT11, GABPB2, SEMA6C, TNFAIP8L2, TNFAIP8L2-SCNM1, LYSMD1, SCNM1, TMOD4, VPS72, PIP5K1A, PSMD4, LOC100507670, ZNF687, PI4KB, RFX5, GBAT2, SELENBP1, PSMB4, POGZ, CGN, TUFT1, MIR554, SNX27, CELF3, RIIAD1, MRPL9, OAZ3, TDRKH, TDRKH-AS1, LINGO4, RORC, C2CD4D, LOC100132111, THEM5, THEM4, S100A10, NBPF18P, S100A11, LOC100131107, TCHHL1, TCHH, RPTN, HRNR, FLG, FLG-AS1, FLG2, CRNN, LCE5A, CRCT1, LCE3E, LCE3D, LCE3C, LCE3B, LCE3A, LINC00302, LCE2D, LCE2C, LCE2B, LCE2A, LCE4A, C1orf68, KPRP, LCE1F, LCE1E, LCE1D, LCE1C, LCE1B, LCE1A, LCE6A, SMCP, IVL, SPRR4, SPRR1A, SPRR3, SPRR1B, SPRR2D, SPRR2A, SPRR2B, SPRR2E, SPRR2F, SPRR2C, SPRR2G, LOC101928009, LELP1, PRR9, LOR, PGLYRP3, PGLYRP4, S100A9, S100A12, S100A8, S100A7A, S100A7L2, S100A7, S100A6, S100A5, S100A4, LOC101928034, S100A3, S100A2, S100A16, S100A14, S100A13, S100A1, CHTOP, SNAPIN, ILF2, NPR1, MIR8083, INTS3, SLC27A3, LOC343052, GATAD2B, DENND4B, CRTC2, SLC39A1, MIR6737, CREB3L4, JTB, RAB13, RPS27, NUP210L, MIR5698, TPM3, MIR190B, C1orf189, C1orf43, UBAP2L, SNORA58B, HAX1, AQP10, ATP8B2, IL6R-AS1, IL6R, SHE, TDRD10, UBE2Q1, UBE2Q1-AS1, CHRNB2, ADAR, KCNN3, PMVK, PBXIP1, PYGO2, LOC101928120, SHC1, CKS1B, MIR4258, FLAD1, LENEP, ZBTB7B, DCST2, DCST1, DCST1-AS1, ADAM15, EFNA4, EFNA3, EFNA1, SLC50A1, DPM3, KRTCAP2, TRIM46, MUC1, MIR92B, THBS3, MTX1, GBAP1, GBA, FAM189B, SCAMP3, CLK2, HCN3, PKLR, FDPS, RUSC1-AS1, RUSC1, ASH1L, MIR555, POU5F1P4, ASH1L-AS1, MSTO1, MSTO2P, YY1AP1, SCARNA26A, DAP3, GON4L, SCARNA26B, SYT11, RIT1, KHDC4, SNORA80E, SCARNA4, RXFP4, ARHGEF2, MIR6738, SSR2	182	PPIAL4E (608608), NBPF14 (614003), NBPF15 (614005), NBPF15 (610414), FCGR1CP (601503), FCGR1A (146760), HIST2H4A (142750), HIST2H3C (142780), HIST2H2AA3 (142720), HIST2H2BE (601831), HIST2H2AC (602797), HIST2H2AB (615014), BOLA1 (613181), SV2A (185860), SF3B4 (605593), OTUD7B (611748), VPS45 (610035), PLEKHO1 (608335), ANP32E (609611), CA14 (604832), APH1A (607629), CIART (615782), MRPS21 (611984), PRPF3 (607301), RPRD2 (614695), TARS2 (612805), ECM1 (602201), FALEC (616092), ADAMTSL4 (610113), MCL1 (159552), ENSA (603061), GOLPH3L (612208), HORMAD1 (609824), CTSS (116845), CTSK (601105), ARNT (126110), SETDB1 (604396), CERS2 (606920), ANXA9 (603319), PRUNE1 (617413), BNIPL (611275), MLLT11 (604684), SEMA6C (609294), TNFAIP8L2 (612112), SCNM1 (608095), TMOD4 (605834), VPS72 (600607), PIP5K1A (603275), PSMD4 (601648), ZNF687 (610568), PI4KB (602758), RFX5 (601863), SELENBP1 (604188), PSMB4 (602177), POGZ (614787), CGN (609473), TUFT1 (600087), SNX27 (611541), CELF3 (612678), MRPL9 (611824), OAZ3 (605138), TDRKH (609501), LINGO4 (609794), RORC (602943), THEM5 (615653), THEM4 (606388), S100A10 (114085), S100A11 (603114), TCHH (190370), RPTN (613259), HRNR (616293), FLG (135940), FLG2 (616284), CRNN (611312), LCE5A (612619), CRCT1 (617426), LCE3E (612617), LCE3D (612616), LCE3C (612615), LCE3B (612614), LCE3A (612613), LCE2D (612612), LCE2C (612611), LCE2B (612610), LCE2A (612609), LCE4A (612618), KPRP (613260), LCE1F (612608), LCE1E (612607), LCE1D (612606), LCE1C (612605), LCE1B (612604), LCE1A (612603), SMCP (601148), IVL (147360), SPRR4 (616363), SPRR1A (182265), SPRR3 (182271), SPRR1B (182266), SPRR2D (617587), SPRR2A (182267), SPRR2B (182268), SPRR2E (617588), SPRR2F (617589), SPRR2G (617590), LELP1 (611042), LOR (152445), PGLYRP3 (608197), PGLYRP4 (608198), S100A9 (123886), S100A12 (603112), S100A8 (123885), S100A7A (617427), S100A7 (600353), S100A6 (114110), S100A5 (176991), S100A4 (114210), S100A3 (176992), S100A2 (176993), S100A16 (617437), S100A14 (607986), S100A13 (601989), S100A1 (176940), CHTOP (614206), SNAPIN (607007), ILF2 (603181), NPR1 (108960), INTS3 (611347), SLC27A3 (604193), GATAD2B (614998), CRTC2 (608972), SLC39A1 (604740), CREB3L4 (607138), JTB (604671), RAB13 (602672), RPS27 (603702), TPM3 (191030), C1orf43 (617428), UBAP2L (616472), HAX1 (605998), AQP10 (606578), ATP8B2 (605867), IL6R (147880), SHE (610482), UBE2Q1 (617429), CHRNB2 (118507), ADAR (146920), KCNN3 (602983), PMVK (607622), PYGO2 (606903), SHC1 (600560), CKS1B (116900), FLAD1 (610595), LENEP (607377), ZBTB7B (607646), ADAM15 (605548), EFNA4 (601380), EFNA3 (601381), EFNA1 (191164), SLC50A1 (613683), DPM3 (605951), TRIM46 (600986), MUC1 (158340), THBS3 (188062), MTX1 (600605), GBA (606463), SCAMP3 (606913), CLK2 (602989), HCN3 (609973), PKLR (609712), FDPS (134629), RUSC1 (617318), ASH1L (607999), MSTO1 (617619), YY1AP1 (607860), DAP3 (602074), GON4L (610393), SYT11 (608741), RIT1 (609591), RXFP4 (609043), ARHGEF2 (607560), SSR2 (600867)	CytoRegions Not Set				false	arr[hg19] 1q21.2q22(147,763,231-155,983,648)x3	chr1:147763231-155983648
LST.OSCHP	3.0	Gain	1	q21.1	1556.865	114	28	NBPF20, NBPF19, NBPF10, ANKRD35, PIAS3, MIR6736, NUDT17, POLR3C, RNF115, CD160, PDZK1, GPR89A, NBPF25P, PDZK1P1, PDE4DIPP1, NBPF11, LOC100505824, NBPF12, LOC728989, RNVU1-8, NBPF13P, PRKAB2, CHD1L, PDIA3P1, FMO5, LINC00624, BCL9, ACP6	14	NBPF20 (614007), NBPF19 (614006), NBPF10 (614000), PIAS3 (605987), POLR3C (617454), CD160 (604463), PDZK1 (603831), GPR89A (612821), NBPF12 (608607), PRKAB2 (602741), CHD1L (613039), FMO5 (603957), BCL9 (602597), ACP6 (611471)	CytoRegions Not Set				false	arr[hg19] 1q21.1q21.2(145,567,445-147,124,310)x3	chr1:145567445-147124310
LST.OSCHP	3.0	Gain	7	p15.2	1420.44	128	30	NFE2L3, HNRNPA2B1, CBX3, SNX10, LOC105375304, LOC441204, KIAA0087, C7orf71, SKAP2, HOXA1, HOTAIRM1, HOXA2, HOXA3, HOXA-AS2, HOXA4, HOXA-AS3, HOXA5, HOXA6, HOXA7, HOXA9, HOXA10-HOXA9, HOXA10-AS, MIR196B, HOXA10, HOXA11, HOXA11-AS, HOXA13, HOTTIP, EVX1-AS, EVX1	21	NFE2L3 (604135), HNRNPA2B1 (600124), CBX3 (604477), SNX10 (614780), SKAP2 (605215), HOXA1 (142955), HOXA2 (604685), HOXA3 (142954), HOXA-AS2 (616068), HOXA4 (142953), HOXA5 (142952), HOXA6 (142951), HOXA7 (142950), HOXA9 (142956), MIR196B (609688), HOXA10 (142957), HOXA11 (142958), HOXA11-AS (607530), HOXA13 (142959), HOTTIP (614060), EVX1 (142996)	CytoRegions Not Set				false	arr[hg19] 7p15.2(26,116,504-27,536,944)x3	chr7:26116504-27536944
LST.OSCHP	3.0	Gain	1	q25.3	33710.081	2500	285	NMNAT2, SMG7-AS1, SMG7, NCF2, ARPC5, RGL1, APOBEC4, COLGALT2, TSEN15, C1orf21, EDEM3, FAM129A, LINC01633, RNF2, TRMT1L, SWT1, IVNS1ABP, GS1-279B7.1, LINC01350, HMCN1, PRG4, TPR, ODR4, OCLM, LOC102724919, PDC, PTGS2, PACERR, PLA2G4A, LINC01036, LINC01037, BRINP3, LINC01351, LINC01720, LINC01680, RGS18, RGS21, RGS1, RGS13, MIR4426, RGS2, LINC01032, UCHL5, SCARNA18B, TROVE2, GLRX2, CDC73, MIR1278, B3GALT2, LINC01031, LINC01724, KCNT2, MIR4735, CFH, CFHR3, CFHR1, CFHR4, CFHR2, CFHR5, F13B, ASPM, ZBTB41, CRB1, DENND1B, C1orf53, LHX9, NEK7, ATP6V1G3, PTPRC, MIR181A1HG, MIR181B1, MIR181A1, LINC01222, LINC01221, LOC400800, NR5A2, LINC00862, ZNF281, KIF14, DDX59, LOC101929224, CAMSAP2, GPR25, INAVA, MROH3P, KIF21B, CACNA1S, ASCL5, TMEM9, IGFN1, PKP1, TNNT2, LAD1, TNNI1, PHLDA3, CSRP1, RPS10P7, NAV1, IPO9-AS1, MIR5191, MIR1231, IPO9, MIR6739, SHISA4, LMOD1, TIMM17A, SNORA70H, RNPEP, ELF3-AS1, MIR6740, ELF3, GPR37L1, ARL8A, PTPN7, PTPRVP, LGR6, UBE2T, PPP1R12B, SYT2, KDM5B, PCAT6, MGAT4EP, LOC148709, RABIF, KLHL12, ADIPOR1, CYB5R1, LOC100506747, TMEM183A, TMEM183B, PPFIA4, MYOG, ADORA1, MYBPH, CHI3L1, CHIT1, LINC01353, LINC01136, BTG2, FMOD, PRELP, OPTC, ATP2B4, SNORA77, LINC00260, LAX1, ZC3H11A, ZBED6, SNRPE, LINC00303, SOX13, ETNK2, ERLNC1, REN, KISS1, GOLT1A, PLEKHA6, LINC00628, PPP1R15B, PIK3C2B, MDM4, LRRN2, NFASC, CNTN2, TMEM81, RBBP5, DSTYK, TMCC2, NUAK2, KLHDC8A, LEMD1-AS1, LEMD1, BLACAT1, MIR135B, LOC284577, CDK18, LOC284578, MFSD4A, ELK4, SLC45A3, NUCKS1, RAB29, SLC41A1, PM20D1, LOC284581, SLC26A9, FAM72A, FAM72C, AVPR1B, RHEX, CTSE, SRGAP2, SRGAP2D, IKBKE, MIR6769B, RASSF5, EIF2D, DYRK3, MAPKAPK2, IL10, IL19, IL20, IL24, FCMR, PIGR, FCAMR, C1orf116, YOD1, PFKFB2, C4BPB, C4BPA, CD55, CR2, CR1, CR1L, CD46, MIR29B2CHG, MIR29C, MIR29B2, LOC148696, CD34, PLXNA2, LINC01717, LINC01774, LINC01696, LINC01698, MIR205HG, MIR205, CAMK1G, LAMB3, MIR4260, LOC101930114, G0S2, HSD11B1, TRAF3IP3, C1orf74, IRF6, UTP25, SYT14, SERTAD4-AS1, SERTAD4, HHAT, KCNH1, KCNH1-IT1, RCOR3, TRAF5, LINC00467, RD3, SLC30A1, LINC01693, NEK2, LOC91548, LPGAT1, LOC102723727, INTS7, DTL, MIR3122, LOC101929541, PPP2R5A, SNORA16B, TMEM206, NENF, LINC01740, ATF3, FAM71A, BATF3, NSL1, TATDN3, SPATA45, FLVCR1-DT, FLVCR1, VASH2, ANGEL2, RPS6KC1, PROX1-AS1, LINC00538, PROX1, SMYD2, PTPN14, CENPF, KCNK2, KCTD3, USH2A, LOC102723833, ESRRG	187	NMNAT2 (608701), SMG7 (610964), NCF2 (608515), ARPC5 (604227), RGL1 (605667), APOBEC4 (609908), COLGALT2 (617533), TSEN15 (608756), EDEM3 (610214), RNF2 (608985), TRMT1L (611673), IVNS1ABP (609209), HMCN1 (608548), PRG4 (604283), TPR (189940), ODR4 (609335), OCLM (604301), PDC (171490), PTGS2 (600262), PACERR (617650), PLA2G4A (600522), RGS18 (607192), RGS21 (612407), RGS1 (600323), RGS13 (607190), RGS2 (600861), UCHL5 (610667), TROVE2 (600063), GLRX2 (606820), CDC73 (607393), B3GALT2 (603018), KCNT2 (610044), CFH (134370), CFHR3 (605336), CFHR1 (134371), CFHR4 (605337), CFHR2 (600889), CFHR5 (608593), F13B (134580), ASPM (605481), CRB1 (604210), DENND1B (613292), LHX9 (606066), NEK7 (606848), PTPRC (151460), MIR181B1 (612744), MIR181A1 (612742), NR5A2 (604453), KIF14 (611279), DDX59 (615464), CAMSAP2 (613775), GPR25 (602174), KIF21B (608322), CACNA1S (114208), TMEM9 (616877), IGFN1 (617309), PKP1 (601975), TNNT2 (191045), LAD1 (602314), TNNI1 (191042), PHLDA3 (607054), CSRP1 (123876), NAV1 (611628), MIR1231 (617040), SHISA4 (617326), LMOD1 (602715), TIMM17A (605057), RNPEP (602675), ELF3 (602191), GPR37L1 (617630), ARL8A (616597), PTPN7 (176889), LGR6 (606653), UBE2T (610538), PPP1R12B (603768), SYT2 (600104), KDM5B (605393), RABIF (603417), KLHL12 (614522), ADIPOR1 (607945), CYB5R1 (608341), TMEM183B (611365), PPFIA4 (603145), MYOG (159980), ADORA1 (102775), MYBPH (160795), CHI3L1 (601525), CHIT1 (600031), BTG2 (601597), FMOD (600245), PRELP (601914), OPTC (605127), ATP2B4 (108732), ZC3H11A (613513), ZBED6 (613512), SNRPE (128260), SOX13 (604748), ETNK2 (609859), REN (179820), KISS1 (603286), PLEKHA6 (607771), PPP1R15B (613257), PIK3C2B (602838), MDM4 (602704), LRRN2 (605492), NFASC (609145), CNTN2 (190197), RBBP5 (600697), DSTYK (612666), NUAK2 (608131), KLHDC8A (614503), LEMD1 (610480), BLACAT1 (615480), CDK18 (169190), ELK4 (600246), SLC45A3 (605097), NUCKS1 (611912), RAB29 (603949), SLC41A1 (610801), PM20D1 (617124), SLC26A9 (608481), FAM72A (614710), AVPR1B (600264), RHEX (616088), CTSE (116890), SRGAP2 (606524), SRGAP2D (614705), IKBKE (605048), RASSF5 (607020), EIF2D (613709), DYRK3 (603497), MAPKAPK2 (602006), IL10 (124092), IL19 (605687), IL20 (605619), IL24 (604136), FCMR (606015), PIGR (173880), FCAMR (605484), C1orf116 (611680), YOD1 (612023), PFKFB2 (171835), C4BPB (120831), C4BPA (120830), CD55 (125240), CR2 (120650), CR1 (120620), CR1L (605886), CD46 (120920), MIR29C (610784), CD34 (142230), PLXNA2 (601054), MIR205 (613147), CAMK1G (614994), LAMB3 (150310), G0S2 (614447), HSD11B1 (600713), TRAF3IP3 (608255), IRF6 (607199), SYT14 (610949), HHAT (605743), KCNH1 (603305), TRAF5 (602356), RD3 (180040), SLC30A1 (609521), NEK2 (604043), LPGAT1 (610473), INTS7 (611350), DTL (610617), PPP2R5A (601643), NENF (611874), ATF3 (603148), BATF3 (612470), NSL1 (609174), FLVCR1-DT (610864), FLVCR1 (609144), VASH2 (610471), RPS6KC1 (617517), LINC00538 (614635), PROX1 (601546), SMYD2 (610663), PTPN14 (603155), CENPF (600236), KCNK2 (603219), KCTD3 (613272), USH2A (608400), ESRRG (602969)	CytoRegions Not Set				false	arr[hg19] 1q25.3q41(183,253,212-216,963,293)x3	chr1:183253212-216963293
LST.OSCHP	3.0	Gain	14	q12	5301.494	353	22	NOVA1, LINC02588, LINC02294, LINC02293, MIR4307HG, MIR4307, LOC728755, LINC00645, MIR3171, FOXG1-AS1, FOXG1, LINC01551, LINC02282, PRKD1, G2E3-AS1, G2E3, SCFD1, COCH, LOC100506071, STRN3, MIR624, AP4S1	7	NOVA1 (602157), FOXG1 (164874), PRKD1 (605435), G2E3 (611299), COCH (603196), STRN3 (614766), AP4S1 (607243)	CytoRegions Not Set				false	arr[hg19] 14q12(26,230,361-31,531,855)x3	chr14:26230361-31531855
LST.OSCHP	3.0	Gain	7	p15.3	1924.138	135	7	NPY, MPP6, GSDME, OSBPL3, CYCS, C7orf31, NPVF	7	NPY (162640), MPP6 (606959), GSDME (608798), OSBPL3 (606732), CYCS (123970), C7orf31 (616071), NPVF (616984)	CytoRegions Not Set				false	arr[hg19] 7p15.3p15.2(23,875,444-25,799,582)x3	chr7:23875444-25799582
LST.OSCHP	3.0	Gain	10	q21.3	7512.858	574	53	NRBF2, JMJD1C, MIR1296, LOC105378330, JMJD1C-AS1, REEP3, ANXA2P3, LOC101928887, LINC01515, CTNNA3, LOC101928961, LRRTM3, MIR7151, DNAJC12, SIRT1, HERC4, POU5F1P5, MYPN, ATOH7, PBLD, HNRNPH3, RUFY2, DNA2, SLC25A16, TET1, CCAR1, SNORD98, STOX1, DDX50, DDX21, KIF1BP, SRGN, VPS26A, SUPV3L1, LOC101928994, HKDC1, HK1, TACR2, TSPAN15, NEUROG3, FAM241B, COL13A1, H2AFY2, AIFM2, TYSND1, SAR1A, PPA1, NPFFR1, LRRC20, EIF4EBP2, NODAL, PALD1, PRF1	40	NRBF2 (616477), JMJD1C (604503), REEP3 (609348), CTNNA3 (607667), LRRTM3 (610869), DNAJC12 (606060), SIRT1 (604479), HERC4 (609248), MYPN (608517), ATOH7 (609875), PBLD (612189), HNRNPH3 (602324), RUFY2 (610328), DNA2 (601810), SLC25A16 (139080), TET1 (607790), CCAR1 (612569), STOX1 (609397), DDX50 (610373), DDX21 (606357), KIF1BP (609367), SRGN (177040), VPS26A (605506), SUPV3L1 (605122), HKDC1 (617221), HK1 (142600), TACR2 (162321), TSPAN15 (613140), NEUROG3 (604882), COL13A1 (120350), H2AFY2 (616141), AIFM2 (605159), TYSND1 (611017), SAR1A (607691), PPA1 (179030), NPFFR1 (607448), EIF4EBP2 (602224), NODAL (601265), PALD1 (614656), PRF1 (170280)	CytoRegions Not Set				false	arr[hg19] 10q21.3q22.1(64,873,882-72,386,740)x3	chr10:64873882-72386740
LST.OSCHP	3.0	Gain	7	p13	7689.145	581	48	NUDCD3, NPC1L1, DDX56, TMED4, OGDH, ZMIZ2, PPIA, H2AFV, PURB, MIR4657, MYO1G, SNHG15, SNORA9, CCM2, NACAD, TBRG4, SNORA5A, SNORA5C, SNORA5B, RAMP3, ADCY1, SEPT7P2, LOC730234, IGFBP1, IGFBP3, LOC730338, TNS3, SNORD151, LINC01447, C7orf65, LINC00525, PKD1L1, C7orf69, HUS1, SUN3, C7orf57, UPP1, ABCA13, CDC14C, VWC2, ZPBP, SPATA48, IKZF1, FIGNL1, DDC, DDC-AS1, GRB10, COBL	29	NUDCD3 (610296), NPC1L1 (608010), DDX56 (608023), TMED4 (612038), OGDH (613022), ZMIZ2 (611196), PPIA (123840), PURB (608887), MYO1G (600642), CCM2 (607929), TBRG4 (611325), SNORA5C (611335), RAMP3 (605155), ADCY1 (103072), SEPT7P2 (611563), IGFBP1 (146730), IGFBP3 (146732), TNS3 (606825), PKD1L1 (609721), HUS1 (603760), UPP1 (191730), ABCA13 (607807), VWC2 (611108), ZPBP (608498), IKZF1 (603023), FIGNL1 (615383), DDC (107930), GRB10 (601523), COBL (610317)	CytoRegions Not Set				false	arr[hg19] 7p13p12.1(44,502,185-52,191,330)x3	chr7:44502185-52191330
LST.OSCHP	3.0	Gain	14	q11.2	2415.726	259	72	OR4M1, OR4N2, OR4K3, OR4K2, OR4K5, OR4K1, OR4K15, OR4Q2, OR4K14, OR4K13, OR4L1, OR4K17, OR4N5, OR11G2, OR11H6, OR11H7, OR11H4, TTC5, CCNB1IP1, SNORA79B, SNORD126, RPPH1, PARP2, TEP1, KLHL33, OSGEP, APEX1, PIP4P1, PNP, RNASE10, RNASE9, RNASE11, LOC254028, RNASE12, OR6S1, ANG, RNASE4, EDDM3A, EDDM3B, RNASE6, RNASE1, RNASE3, ECRP, RNASE2, METTL17, LOC101929718, SLC39A2, NDRG2, MIR6717, TPPP2, RNASE13, RNASE7, RNASE8, ARHGEF40, ZNF219, TMEM253, OR5AU1, LINC00641, HNRNPC, RPGRIP1, SUPT16H, CHD8, SNORD9, SNORD8, RAB2B, TOX4, METTL3, SALL2, OR10G3, OR10G2, OR4E2, OR4E1	33	CCNB1IP1 (608249), RPPH1 (608513), PARP2 (607725), TEP1 (601686), OSGEP (610107), APEX1 (107748), PIP4P1 (609865), PNP (164050), RNASE9 (614014), ANG (105850), RNASE4 (601030), EDDM3A (611580), EDDM3B (611582), RNASE6 (601981), RNASE1 (180440), RNASE3 (131398), RNASE2 (131410), METTL17 (616091), SLC39A2 (612166), NDRG2 (605272), TPPP2 (616956), RNASE7 (612484), RNASE8 (612485), ARHGEF40 (610018), ZNF219 (605036), HNRNPC (164020), RPGRIP1 (605446), SUPT16H (605012), CHD8 (610528), RAB2B (607466), TOX4 (614032), METTL3 (612472), SALL2 (602219)	CytoRegions Not Set				false	arr[hg19] 14q11.2(20,219,082-22,634,808)x3	chr14:20219082-22634808
LST.OSCHP	3.0	Gain	7	p22.3	630.237	95	15	PDGFA, HRAT92, PRKAR1B, LOC101927000, LOC101926963, DNAAF5, SUN1, GET4, ADAP1, COX19, C7orf50, CYP2W1, MIR339, GPR146, GPER1	10	PDGFA (173430), PRKAR1B (176911), DNAAF5 (614864), SUN1 (607723), GET4 (612056), ADAP1 (608114), COX19 (610429), CYP2W1 (615967), MIR339 (615977), GPER1 (601805)	CytoRegions Not Set				false	arr[hg19] 7p22.3(535,346-1,165,583)x3	chr7:535346-1165583
LST.OSCHP	3.0	Gain	3	q26.32	142.349	18	4	PIK3CA, KCNMB3, ZNF639, MFN1	3	PIK3CA (171834), KCNMB3 (605222), MFN1 (608506)	CytoRegions Not Set				false	arr[hg19] 3q26.32q26.33(178,932,266-179,074,615)x3	chr3:178932266-179074615
LST.OSCHP	3.0	Gain	16	p13.3	9910.618	912	172	PKD1, LOC105371049, MIR6511B1, MIR6511B2, MIR4516, MIR3180-5, RAB26, SNHG19, SNORD60, TRAF7, CASKIN1, MLST8, BRICD5, PGP, E4F1, DNASE1L2, ECI1, RNPS1, LOC106660606, MIR3677, MIR940, MIR4717, ABCA3, ABCA17P, CCNF, MIR6767, TEDC2, MIR6768, LOC729652, NTN3, TBC1D24, ATP6V0C, AMDHD2, CEMP1, MIR3178, PDPK1, LOC652276, FLJ42627, ERVK13-1, KCTD5, PRSS27, SRRM2-AS1, SRRM2, ELOB, PRSS33, PRSS41, SNORA3C, PRSS21, ZG16B, PRSS30P, PRSS22, FLYWCH2, FLYWCH1, KREMEN2, PAQR4, PKMYT1, LINC00514, LOC101929613, CLDN9, CLDN6, TNFRSF12A, HCFC1R1, THOC6, BICDL2, LOC100128770, MMP25, MMP25-AS1, IL32, ZSCAN10, ZNF205-AS1, ZNF205, ZNF213-AS1, ZNF213, CASP16P, OR1F1, OR1F2P, ZNF200, MEFV, LINC00921, ZNF263, TIGD7, ZNF75A, OR2C1, MTRNR2L4, ZSCAN32, ZNF174, ZNF597, NAA60, MIR6126, C16orf90, CLUAP1, NLRC3, SLX4, DNASE1, TRAP1, CREBBP, LOC102724927, ADCY9, SRL, LINC01569, TFAP4, GLIS2, GLIS2-AS1, PAM16, CORO7-PAM16, CORO7, VASN, DNAJA3, NMRAL1, HMOX2, CDIP1, C16orf96, UBALD1, MGRN1, MIR6769A, NUDT16L1, ANKS3, C16orf71, ZNF500, SEPT12, SMIM22, ROGDI, GLYR1, UBN1, PPL, SEC14L5, NAGPA, NAGPA-AS1, C16orf89, ALG1, EEF2KMT, LINC01570, MIR8065, RBFOX1, TMEM114, METTL22, ABAT, TMEM186, PMM2, LOC100130283, CARHSP1, USP7, C16orf72, LINC02177, LINC01177, LINC01195, GRIN2A, ATF7IP2, LINC01290, EMP2, TEKT5, NUBP1, TVP23A, CIITA, DEXI, CLEC16A, SOCS1, TNP2, PRM3, PRM2, PRM1, LOC105371083, RMI2, LOC101927131, LITAF, SNN, TXNDC11, ZC3H7A, BCAR4, RSL1D1, GSPT1, NPIPB2	96	PKD1 (601313), RAB26 (605455), TRAF7 (606692), CASKIN1 (612184), MLST8 (612190), PGP (172280), E4F1 (603022), DNASE1L2 (602622), ECI1 (600305), RNPS1 (606447), ABCA3 (601615), CCNF (600227), NTN3 (602349), TBC1D24 (613577), ATP6V0C (108745), CEMP1 (611113), PDPK1 (605213), KCTD5 (611285), PRSS27 (608018), SRRM2 (606032), ELOB (600787), PRSS33 (613797), PRSS21 (608159), PRSS22 (609343), KREMEN2 (609899), PAQR4 (614578), PKMYT1 (602474), CLDN9 (615799), CLDN6 (615798), TNFRSF12A (605914), THOC6 (615403), BICDL2 (617003), MMP25 (608482), IL32 (606001), ZNF205 (603436), ZNF213 (608387), OR1F1 (603232), ZNF200 (603231), MEFV (608107), ZNF263 (604191), TIGD7 (612969), ZNF75A (601473), ZNF174 (603900), ZNF597 (614685), NAA60 (614246), CLUAP1 (616787), NLRC3 (615648), SLX4 (613278), DNASE1 (125505), TRAP1 (606219), CREBBP (600140), ADCY9 (603302), SRL (604992), TFAP4 (600743), GLIS2 (608539), PAM16 (614336), CORO7 (611668), VASN (608843), DNAJA3 (608382), HMOX2 (141251), CDIP1 (610503), MGRN1 (607559), NUDT16L1 (617338), ANKS3 (617310), SEPT12 (611562), ROGDI (614574), GLYR1 (610660), UBN1 (609771), PPL (602871), NAGPA (607985), ALG1 (605907), EEF2KMT (615263), RBFOX1 (605104), TMEM114 (611579), METTL22 (615261), ABAT (137150), PMM2 (601785), CARHSP1 (616885), USP7 (602519), GRIN2A (138253), ATF7IP2 (613645), EMP2 (602334), NUBP1 (600280), CIITA (600005), CLEC16A (611303), SOCS1 (603597), TNP2 (190232), PRM2 (182890), PRM1 (182880), RMI2 (612426), LITAF (603795), SNN (603032), TXNDC11 (617792), BCAR4 (613746), RSL1D1 (615874), GSPT1 (139259)	CytoRegions Not Set				false	arr[hg19] 16p13.3p13.13(2,144,573-12,055,191)x3	chr16:2144573-12055191
LST.OSCHP	3.0	Gain	4	q21.21	761.821	51	3	PRKG2, LOC101928942, RASGEF1B	2	PRKG2 (601591), RASGEF1B (614532)	CytoRegions Not Set				false	arr[hg19] 4q21.21q21.22(81,990,900-82,752,721)x3	chr4:81990900-82752721
LST.OSCHP	3.0	Gain	1	p34.2	3774.963	357	90	PTPRF, KDM4A, KDM4A-AS1, ST3GAL3, LOC101929592, MIR6079, ARTN, IPO13, DPH2, ATP6V0B, B4GALT2, CCDC24, SLC6A9, KLF17, KLF18, DMAP1, ERI3, ERI3-IT1, SNORA110, RNF220, MIR5584, TMEM53, SNORD145, ARMH1, KIF2C, SNORD160, RPS8, SNORD55, SNORD46, SNORD38A, SNORD38B, BEST4, PLK3, TCTEX1D4, BTBD19, PTCH2, EIF2B3, HECTD3, UROD, ZSWIM5, LINC01144, HPDL, MUTYH, TOE1, TESK2, CCDC163, MMACHC, PRDX1, AKR1A1, NASP, CCDC17, GPBP1L1, RPS15AP10, TMEM69, IPP, MAST2, PIK3R3, LOC110117498-PIK3R3, LOC101929626, TSPAN1, LOC110117498, POMGNT1, LURAP1, RAD54L, LRRC41, UQCRH, NSUN4, FAAH, FAAHP1, LINC01398, DMBX1, LOC105378696, MKNK1-AS1, KNCN, MKNK1, MOB3C, ATPAF1, TEX38, EFCAB14-AS1, EFCAB14, CYP4B1, CYP4Z2P, CYP4A11, CYP4X1, CYP4Z1, CYP4A22, LINC00853, PDZK1IP1, TAL1, STIL	49	PTPRF (179590), KDM4A (609764), ST3GAL3 (606494), ARTN (603886), IPO13 (610411), DPH2 (603456), ATP6V0B (603717), B4GALT2 (604013), SLC6A9 (601019), KLF17 (609602), DMAP1 (605077), ERI3 (609917), RNF220 (616136), KIF2C (604538), RPS8 (600357), BEST4 (607336), PLK3 (602913), TCTEX1D4 (611713), PTCH2 (603673), EIF2B3 (606273), UROD (613521), MUTYH (604933), TOE1 (613931), TESK2 (604746), MMACHC (609831), PRDX1 (176763), AKR1A1 (103830), NASP (603185), IPP (147485), MAST2 (612257), PIK3R3 (606076), TSPAN1 (613170), POMGNT1 (606822), LURAP1 (616129), RAD54L (603615), UQCRH (613844), NSUN4 (615394), FAAH (602935), DMBX1 (607410), KNCN (611455), MKNK1 (606724), ATPAF1 (608917), CYP4B1 (124075), CYP4A11 (601310), CYP4X1 (614999), CYP4A22 (615341), PDZK1IP1 (607178), TAL1 (187040), STIL (181590)	CytoRegions Not Set				false	arr[hg19] 1p34.2p33(43,941,926-47,716,889)x3	chr1:43941926-47716889
LST.OSCHP	3.0	Gain	6	p22.3	247.851	19	3	RBM24, CAP2, LOC101928491	1	RBM24 (617603)	CytoRegions Not Set				false	arr[hg19] 6p22.3(17,259,679-17,507,530)x3	chr6:17259679-17507530
LST.OSCHP	3.0	Gain	22	q11.21	170.687	31	5	SEPT5, SEPT5-GP1BB, GP1BB, TBX1, GNB1L	4	SEPT5 (602724), GP1BB (138720), TBX1 (602054), GNB1L (610778)	CytoRegions Not Set				false	arr[hg19] 22q11.21(19,658,753-19,829,440)x3	chr22:19658753-19829440
LST.OSCHP	3.0	Gain	4	q21.1	4329.556	341	25	SHROOM3, MIR4450, MIR548AH, SOWAHB, SEPT11, CCNI, CCNG2, CXCL13, CNOT6L, MRPL1, FRAS1, SNORD161, ANXA3, LINC01094, BMP2K, PAQR3, LINC01088, NAA11, GK2, LINC00989, PCAT4, ANTXR2, PRDM8, FGF5, CFAP299	13	SHROOM3 (604570), SEPT11 (612887), CCNG2 (603203), CXCL13 (605149), MRPL1 (611821), FRAS1 (607830), ANXA3 (106490), BMP2K (617648), PAQR3 (614577), PCAT4 (609717), ANTXR2 (608041), PRDM8 (616639), FGF5 (165190)	CytoRegions Not Set				false	arr[hg19] 4q21.1q21.21(77,357,591-81,687,147)x3	chr4:77357591-81687147
LST.OSCHP	3.0	Gain	11	p15.4	5004.769	387	144	SLC22A18, PHLDA2, NAP1L4, SNORA54, CARS, CARS-AS1, OSBPL5, MRGPRG, MRGPRG-AS1, MRGPRE, ZNF195, TSSC2, OR7E12P, LOC101927708, TRPC2, ART5, ART1, CHRNA10, NUP98, PGAP2, RHOG, STIM1, MIR4687, RRM1, LOC100506082, OR52B4, TRIM21, OR52K2, OR52K1, OR52M1, C11orf40, OR52I2, OR52I1, TRIM68, OR51D1, OR51E1, OR51E2, OR51F1, OR52R1, OR51F2, OR51S1, OR51H1, OR51T1, OR51A7, OR51G2, OR51G1, OR51A4, OR51A2, MMP26, OR51L1, OR52J3, OR52E2, OR52E1, OR52A5, OR52A1, OR52Z1, OR51V1, HBB, HBD, HBBP1, BGLT3, HBG1, HBG2, HBE1, OR51B4, OR51B2, OR51B5, OR51B6, OR51M1, OR51J1, OR51Q1, OR51I1, OR51I2, OR52D1, UBQLN3, UBQLNL, OLFM5P, OR52H1, OR52B6, TRIM6, TRIM6-TRIM34, TRIM34, TRIM5, TRIM22, OR56B1, OR52N4, OR52N5, OR52N1, OR52N2, OR52E6, OR52E8, OR52E4, OR52E5, OR56A3, OR56A5, OR52L1, OR56A4, OR56A1, OR56B4, OR52B2, OR52W1, C11orf42, FAM160A2, CNGA4, CCKBR, CAVIN3, SMPD1, APBB1, HPX, TRIM3, ARFIP2, TIMM10B, DNHD1, RRP8, ILK, TAF10, TPP1, DCHS1, MRPL17, GVINP1, OR2AG2, OR2AG1, OR6A2, OR10A5, OR10A2, OR10A4, OR2D2, OR2D3, ZNF215, ZNF214, NLRP14, RBMXL2, MIR302E, SYT9, LOC100506258, OLFML1, PPFIBP2, CYB5R2, OVCH2, OR5P2, OR5P3, OR5E1P, LOC283299, OR10A6	58	SLC22A18 (602631), PHLDA2 (602131), NAP1L4 (601651), CARS (123859), OSBPL5 (606733), MRGPRG (607234), MRGPRE (607232), ZNF195 (602187), TSSC2 (608999), ART5 (610625), ART1 (601625), CHRNA10 (606372), NUP98 (601021), PGAP2 (615187), RHOG (179505), STIM1 (605921), RRM1 (180410), TRIM21 (109092), TRIM68 (613184), OR51E1 (611267), OR51E2 (611268), MMP26 (605470), HBB (141900), HBD (142000), BGLT3 (616308), HBG1 (142200), HBG2 (142250), HBE1 (142100), UBQLN3 (605473), TRIM6 (607564), TRIM34 (605684), TRIM5 (608487), TRIM22 (606559), CNGA4 (609472), CCKBR (118445), SMPD1 (607608), APBB1 (602709), HPX (142290), TRIM3 (605493), ARFIP2 (601638), TIMM10B (607388), DNHD1 (617277), RRP8 (615818), ILK (602366), TAF10 (600475), TPP1 (607998), DCHS1 (603057), MRPL17 (611830), OR6A2 (608495), OR10A5 (608493), OR2D2 (608494), ZNF215 (605016), ZNF214 (605015), NLRP14 (609665), RBMXL2 (605444), SYT9 (613528), PPFIBP2 (603142), CYB5R2 (608342)	CytoRegions Not Set				false	arr[hg19] 11p15.4(2,945,091-7,949,860)x3	chr11:2945091-7949860
LST.OSCHP	3.0	Gain	22	q12.3	4987.788	378	53	SLC5A4-AS1, SLC5A4, RFPL3, RFPL3S, LOC339666, RTCB, BPIFC, FBXO7, SYN3, TIMP3, LINC01640, LARGE1, MIR4764, SNORA50B, LARGE-AS1, ISX-AS1, ISX, LINC01399, HMGXB4, TOM1, MIR3909, MIR6069, HMOX1, MCM5, RASD2, MB, APOL6, APOL5, RBFOX2, APOL3, APOL4, APOL2, APOL1, MYH9, MIR6819, TXN2, FOXRED2, EIF3D, CACNG2, LOC105373021, IFT27, PVALB, NCF4-AS1, NCF4, CSF2RB, LL22NC01-81G9.3, TEX33, TST, MPST, KCTD17, TMPRSS6, IL2RB, C1QTNF6	37	RFPL3 (605970), RFPL3S (605971), RTCB (613901), BPIFC (614109), FBXO7 (605648), SYN3 (602705), TIMP3 (188826), LARGE1 (603590), ISX (612019), HMGXB4 (604702), TOM1 (604700), HMOX1 (141250), MCM5 (602696), RASD2 (612842), MB (160000), APOL6 (607256), APOL5 (607255), RBFOX2 (612149), APOL3 (607253), APOL4 (607254), APOL2 (607252), APOL1 (603743), MYH9 (160775), TXN2 (609063), FOXRED2 (613777), EIF3D (603915), CACNG2 (602911), IFT27 (615870), PVALB (168890), NCF4 (601488), CSF2RB (138981), TST (180370), MPST (602496), KCTD17 (616386), TMPRSS6 (609862), IL2RB (146710), C1QTNF6 (614910)	CytoRegions Not Set				false	arr[hg19] 22q12.3(32,604,716-37,592,504)x3	chr22:32604716-37592504
LST.OSCHP	3.0	Gain	4	p15.31	5495.433	376	12	SLIT2, SLIT2-IT1, MIR218-1, PACRGL, KCNIP4, MIR7978, LOC105374516, KCNIP4-IT1, LOC100505912, ADGRA3, GBA3, PPARGC1A	6	SLIT2 (603746), MIR218-1 (616770), KCNIP4 (608182), ADGRA3 (612303), GBA3 (606619), PPARGC1A (604517)	CytoRegions Not Set				false	arr[hg19] 4p15.31p15.2(18,988,090-24,483,523)x3	chr4:18988090-24483523
LST.OSCHP	3.0	Gain	4	p15.2	6212.252	415	22	SOD3, CCDC149, LGI2, SEPSECS, SEPSECS-AS1, PI4K2B, ZCCHC4, ANAPC4, LOC101929161, SLC34A2, SEL1L3, SMIM20, RBPJ, CCKAR, TBC1D19, LOC105374546, STIM2, LINC02261, MIR4275, LINC02364, LINC02472, PCDH7	12	SOD3 (185490), LGI2 (608301), SEPSECS (613009), PI4K2B (612101), ZCCHC4 (611792), ANAPC4 (606947), SLC34A2 (604217), SMIM20 (617465), RBPJ (147183), CCKAR (118444), STIM2 (610841), PCDH7 (602988)	CytoRegions Not Set				false	arr[hg19] 4p15.2p15.1(24,735,462-30,947,714)x3	chr4:24735462-30947714
LST.OSCHP	3.0	Gain	12	p12.1	14249.714	817	66	SOX5, MIR920, SOX5-AS1, LINC00477, BCAT1, C12orf77, LOC645177, LRMP, CASC1, ETFRF1, KRAS, LMNTD1, MIR4302, RASSF8-AS1, RASSF8, BHLHE41, SSPN, ITPR2, INTS13, FGFR1OP2, TM7SF3, MED21, C12orf71, STK38L, ARNTL2, ARNTL2-AS1, SMCO2, PPFIBP1, REP15, MRPS35, MANSC4, KLHL42, PTHLH, LOC729291, CCDC91, FAR2, LOC100506606, ERGIC2, OVCH1-AS1, OVCH1, TMTC1, IPO8, CAPRIN2, LOC645485, LINC00941, TSPAN11, DDX11-AS1, DDX11, OVOS2, SINHCAF, FLJ13224, LINC02387, DENND5B, DENND5B-AS1, ETFBKMT, AMN1, H3F3C, LINC02422, KIAA1551, BICD1, FGD4, DNM1L, YARS2, PKP2, SYT10, ALG10	37	SOX5 (604975), BCAT1 (113520), LRMP (602003), CASC1 (616906), KRAS (190070), LMNTD1 (617254), RASSF8 (608231), BHLHE41 (606200), SSPN (601599), ITPR2 (600144), INTS13 (615079), FGFR1OP2 (608858), TM7SF3 (605181), MED21 (603800), STK38L (615836), ARNTL2 (614517), PPFIBP1 (603141), REP15 (610848), MRPS35 (611995), PTHLH (168470), CCDC91 (617366), FAR2 (616156), ERGIC2 (612236), TMTC1 (615855), IPO8 (605600), CAPRIN2 (610375), DDX11 (601150), SINHCAF (615027), DENND5B (617279), ETFBKMT (615256), H3F3C (616134), BICD1 (602204), FGD4 (611104), DNM1L (603850), YARS2 (610957), PKP2 (602861), ALG10 (603313)	CytoRegions Not Set				false	arr[hg19] 12p12.1q12(24,166,425-38,416,139)x3	chr12:24166425-38416139
LST.OSCHP	3.0	Gain	17	q21.32	3351.91	367	98	SP2, SP2-AS1, PNPO, PRR15L, CDK5RAP3, COPZ2, MIR152, NFE2L1, CBX1, SNX11, SKAP1, MIR1203, THRA1/BTR, LOC101927166, HOXB1, HOXB2, HOXB-AS1, HOXB3, HOXB4, MIR10A, HOXB-AS3, HOXB5, HOXB6, HOXB7, HOXB8, HOXB9, MIR196A1, PRAC1, PRAC2, MIR3185, HOXB13, TTLL6, CALCOCO2, LOC105371814, ATP5MC1, UBE2Z, SNF8, GIP, IGF2BP1, B4GALNT2, GNGT2, ABI3, PHOSPHO1, FLJ40194, MIR6129, ZNF652, LOC102724596, PHB, LINC02075, NGFR, LOC100288866, MIR6165, NXPH3, SPOP, SLC35B1, FAM117A, KAT7, TAC4, FLJ45513, DLX4, DLX3, PICART1, ITGA3, PDK2, SAMD14, PPP1R9B, SGCA, HILS1, COL1A1, LINC01969, TMEM92, TMEM92-AS1, XYLT2, MRPL27, EME1, LRRC59, ACSF2, CHAD, RSAD1, MYCBPAP, EPN3, LOC105371824, SPATA20, CACNA1G-AS1, CACNA1G, ABCC3, ANKRD40, LUC7L3, ANKRD40CL, MIR8059, WFIKKN2, TOB1, TOB1-AS1, SPAG9, NME1-NME2, NME1, NME2, MBTD1	66	SP2 (601801), PNPO (603287), CDK5RAP3 (608202), COPZ2 (615526), MIR152 (613788), NFE2L1 (163260), CBX1 (604511), SNX11 (614906), SKAP1 (604969), HOXB1 (142968), HOXB2 (142967), HOXB3 (142966), HOXB4 (142965), MIR10A (610173), HOXB5 (142960), HOXB6 (142961), HOXB7 (142962), HOXB8 (142963), HOXB9 (142964), MIR196A1 (608632), PRAC1 (609819), PRAC2 (610787), HOXB13 (604607), TTLL6 (610849), CALCOCO2 (604587), ATP5MC1 (603192), UBE2Z (611362), SNF8 (610904), GIP (137240), IGF2BP1 (608288), B4GALNT2 (111730), GNGT2 (139391), ABI3 (606363), ZNF652 (613907), PHB (176705), NGFR (162010), NXPH3 (604636), SPOP (602650), SLC35B1 (610790), KAT7 (609880), TAC4 (607833), DLX4 (601911), DLX3 (600525), ITGA3 (605025), PDK2 (602525), PPP1R9B (603325), SGCA (600119), HILS1 (608101), COL1A1 (120150), XYLT2 (608125), MRPL27 (611837), EME1 (610885), LRRC59 (614854), ACSF2 (610465), CHAD (602178), MYCBPAP (609835), EPN3 (607264), SPATA20 (613939), CACNA1G (604065), ABCC3 (604323), LUC7L3 (609434), WFIKKN2 (610895), TOB1 (605523), SPAG9 (605430), NME1 (156490), NME2 (156491)	CytoRegions Not Set				false	arr[hg19] 17q21.32q21.33(45,982,796-49,334,706)x3	chr17:45982796-49334706
LST.OSCHP	3.0	Gain	7	p15.3	2509.151	170	23	SP4, MIR1183, DNAH11, CDCA7L, RAPGEF5, STEAP1B, LOC100506178, LOC401312, LOC541472, IL6, TOMM7, SNHG26, SNORD93, FAM126A, KLHL7-DT, KLHL7, NUPL2, GPNMB, MALSU1, IGF2BP3, SNORD65C, RPS2P32, TRA2A	12	SP4 (600540), DNAH11 (603339), CDCA7L (609685), RAPGEF5 (609527), IL6 (147620), TOMM7 (607980), FAM126A (610531), KLHL7 (611119), GPNMB (604368), MALSU1 (614624), IGF2BP3 (608259), TRA2A (602718)	CytoRegions Not Set				false	arr[hg19] 7p15.3(21,084,328-23,593,479)x3	chr7:21084328-23593479
LST.OSCHP	3.0	Gain	16	p11.2	6638.411	306	155	SULT1A1, NPIPB8, EIF3C, EIF3CL, MIR6862-1, MIR6862-2, NPIPB9, ATXN2L, TUFM, MIR4721, SH2B1, ATP2A1, ATP2A1-AS1, RABEP2, CD19, NFATC2IP, MIR4517, SPNS1, LAT, RRN3P2, SNX29P2, NPIPB11, SMG1P6, BOLA2-SMG1P6, LOC606724, BOLA2, BOLA2B, SLX1A, SLX1B, SLX1A-SULT1A3, SLX1B-SULT1A4, SULT1A4, SULT1A3, LOC613038, LOC388242, NPIPB12, SMG1P2, MIR3680-1, MIR3680-2, SPN, QPRT, C16orf54, ZG16, KIF22, MAZ, PRRT2, PAGR1, MVP, CDIPT, CDIPTOSP, SEZ6L2, ASPHD1, KCTD13, TMEM219, TAOK2, HIRIP3, INO80E, DOC2A, C16orf92, FAM57B, ALDOA, PPP4C, TBX6, YPEL3, LOC101928595, GDPD3, MAPK3, CORO1A, NPIPB13, SMG1P5, CD2BP2, TBC1D10B, MYLPF, SEPT1, ZNF48, ZNF771, SNORA80C, DCTPP1, SEPHS2, ITGAL, MIR4518, ZNF768, ZNF747, ZNF764, ZNF688, ZNF785, ZNF689, PRR14, FBRS, LOC730183, SRCAP, SNORA30, TMEM265, PHKG2, CCDC189, RNF40, ZNF629, BCL7C, MIR4519, MIR762HG, MIR762, CTF1, FBXL19-AS1, FBXL19, ORAI3, SETD1A, HSD3B7, STX1B, STX4, ZNF668, ZNF646, PRSS53, VKORC1, BCKDK, KAT8, PRSS8, PRSS36, FUS, PYCARD, PYCARD-AS1, TRIM72, PYDC1, ITGAM, ITGAX, ITGAD, COX6A2, ZNF843, ARMC5, TGFB1I1, SLC5A2, C16orf58, AHSP, LINC02190, FRG2KP, YBX3P1, CLUHP3, ZNF720, VN1R3, ZNF267, LOC102723753, HERC2P4, TP53TG3D, LOC390705, TP53TG3E, TP53TG3F, TP53TG3B, TP53TG3, TP53TG3C, SLC6A10P, ENPP7P13, UBE2MP1, LINC01566, FRG2DP, TP53TG3HP, LINC02167	79	SULT1A1 (171150), EIF3C (603916), ATXN2L (607931), TUFM (602389), SH2B1 (608937), ATP2A1 (108730), RABEP2 (611869), CD19 (107265), NFATC2IP (614525), SPNS1 (612583), LAT (602354), BOLA2 (613182), SLX1B (615823), SLX1A (615822), SPN (182160), QPRT (606248), ZG16 (617311), KIF22 (603213), MAZ (600999), PRRT2 (614386), PAGR1 (612033), MVP (605088), CDIPT (605893), SEZ6L2 (616667), KCTD13 (608947), TAOK2 (613199), HIRIP3 (603365), DOC2A (604567), FAM57B (615175), ALDOA (103850), PPP4C (602035), TBX6 (602427), YPEL3 (609724), GDPD3 (616318), MAPK3 (601795), CORO1A (605000), SULT1A3 (600641), SULT1A4 (615819), CD2BP2 (604470), TBC1D10B (613620), MYLPF (617378), SEPT1 (612897), DCTPP1 (615840), SEPHS2 (606218), ITGAL (153370), PRR14 (617423), FBRS (608601), SRCAP (611421), PHKG2 (172471), RNF40 (607700), BCL7C (605847), CTF1 (600435), FBXL19 (609085), ORAI3 (610930), SETD1A (611052), HSD3B7 (607764), STX1B (601485), STX4 (186591), ZNF668 (617103), PRSS53 (610561), VKORC1 (608547), BCKDK (614901), KAT8 (609912), PRSS8 (600823), PRSS36 (610560), FUS (137070), PYCARD (606838), TRIM72 (613288), PYDC1 (615700), ITGAM (120980), ITGAX (151510), ITGAD (602453), COX6A2 (602009), ARMC5 (615549), TGFB1I1 (602353), SLC5A2 (182381), AHSP (605821), ZNF267 (604752), TP53TG3 (617482)	CytoRegions Not Set				false	arr[hg19] 16p11.2p11.1(28,633,314-35,271,725)x3	chr16:28633314-35271725
LST.OSCHP	3.0	Gain	5	q13.3	9545.127	645	66	SV2C, IQGAP2, LOC101929109, F2RL2, NCRUPAR, F2R, F2RL1, S100Z, CRHBP, AGGF1, ZBED3, SNORA47, ZBED3-AS1, PDE8B, WDR41, OTP, TBCA, LOC101929154, AP3B1, SCAMP1-AS1, SCAMP1, LHFPL2, ARSB, DMGDH, BHMT2, BHMT, JMY, HOMER1, TENT2, CMYA5, LINC01455, MTX3, THBS4, CTD-2201I18.1, SERINC5, LOC644936, SPZ1, CRSP8P, ZFYVE16, FAM151B, ANKRD34B, LINC01337, DHFR, MTRNR2L2, MSH3, RASGRF2-AS1, RASGRF2, RNU5E-1, RNU5D-1, CKMT2, CKMT2-AS1, ZCCHC9, ACOT12, SSBP2, ATG10, RPS23, ATP6AP1L, MIR3977, LINC01338, TMEM167A, SCARNA18, XRCC4, VCAN, VCAN-AS1, HAPLN1, EDIL3	40	SV2C (610291), IQGAP2 (605401), F2RL2 (601919), F2R (187930), F2RL1 (600933), S100Z (610103), CRHBP (122559), AGGF1 (608464), ZBED3 (615250), PDE8B (603390), WDR41 (617502), OTP (604529), TBCA (610058), AP3B1 (603401), SCAMP1 (606911), LHFPL2 (609718), ARSB (611542), DMGDH (605849), BHMT2 (605932), BHMT (602888), JMY (604279), HOMER1 (604798), TENT2 (614121), CMYA5 (612193), THBS4 (600715), SERINC5 (614551), ZFYVE16 (608880), DHFR (126060), MSH3 (600887), RASGRF2 (606614), CKMT2 (123295), ACOT12 (614315), SSBP2 (607389), ATG10 (610800), RPS23 (603683), SCARNA18 (611329), XRCC4 (194363), VCAN (118661), HAPLN1 (115435), EDIL3 (606018)	CytoRegions Not Set				false	arr[hg19] 5q13.3q14.3(75,176,084-84,721,211)x3	chr5:75176084-84721211
LST.OSCHP	3.0	Gain	7	p15.2	7905.617	585	64	TAX1BP1, JAZF1, JAZF1-AS1, CREB5, TRIL, LOC100506497, CPVL, LOC101928168, CHN2, LOC102724484, PRR15, LOC646762, MIR550A3, ZNRF2P2, DPY19L2P3, WIPF3, SCRN1, FKBP14, PLEKHA8, MTURN, LOC105375218, ZNRF2, MIR550B1, MIR550A1, DKFZP586I1420, LINC01176, NOD1, GGCT, LOC401320, GARS, CRHR2, INMT, INMT-MINDY4, MINDY4, AQP1, GHRHR, ADCYAP1R1, NEUROD6, ITPRID1, PPP1R17, PDE1C, LOC100130673, LSM5, AVL9, DPY19L1P1, ZNRF2P1, MIR550B2, MIR550A2, LINC00997, DPY19L1P2, KBTBD2, RP9P, FKBP9, NT5C3A, RP9, BBS9, BMPER, NPSR1-AS1, NPSR1, DPY19L1, DPY19L2P1, TBX20, LOC401324, HERPUD2	32	TAX1BP1 (605326), JAZF1 (606246), TRIL (613356), CPVL (609780), CHN2 (602857), WIPF3 (612432), SCRN1 (614965), FKBP14 (614505), PLEKHA8 (608639), ZNRF2 (612061), NOD1 (605980), GGCT (137170), GARS (600287), CRHR2 (602034), INMT (604854), AQP1 (107776), GHRHR (139191), ADCYAP1R1 (102981), NEUROD6 (611513), PPP1R17 (604088), PDE1C (602987), LSM5 (607285), AVL9 (612927), FKBP9 (616257), NT5C3A (606224), RP9 (607331), BBS9 (607968), BMPER (608699), NPSR1-AS1 (608596), NPSR1 (608595), DPY19L1 (613892), TBX20 (606061)	CytoRegions Not Set				false	arr[hg19] 7p15.2p14.2(27,828,626-35,734,243)x3	chr7:27828626-35734243
LST.OSCHP	3.0	Gain	22	q11.21	470.615	45	14	TMEM191C, PI4KAP2, RIMBP3B, RIMBP3C, UBE2L3, YDJC, CCDC116, SDF2L1, MIR301B, MIR130B, PPIL2, YPEL1, MAPK1, PPM1F	6	UBE2L3 (603721), SDF2L1 (607551), MIR130B (613682), PPIL2 (607588), YPEL1 (608082), MAPK1 (176948)	CytoRegions Not Set				false	arr[hg19] 22q11.21q11.22(21,809,184-22,279,799)x3	chr22:21809184-22279799
LST.OSCHP	3.0	Gain	18	q22.1	5364.517	379	19	TMX3, CCDC102B, DOK6, LOC105372179, CD226, RTTN, SOCS6, LINC01909, LIVAR, LINC01910, GTSCR1, LINC01541, LINC01899, CBLN2, NETO1, MIR548AV, LOC100505797, LOC400655, LINC02582	7	TMX3 (616102), DOK6 (611402), CD226 (605397), RTTN (610436), SOCS6 (605118), CBLN2 (600433), NETO1 (607973)	CytoRegions Not Set				false	arr[hg19] 18q22.1q22.3(66,253,314-71,617,831)x3	chr18:66253314-71617831
LST.OSCHP	3.0	Gain	6	q25.3	6660.844	685	49	TULP4, SNORA116, TMEM181, MIR7161, DYNLT1, SYTL3, MIR3918, EZR, EZR-AS1, OSTCP1, C6orf99, RSPH3, TAGAP, LOC101929122, FNDC1, LINC02529, SOD2, WTAP, SOD2-OT1, ACAT2, TCP1, SNORA20, SNORA29, MRPL18, PNLDC1, MAS1, IGF2R, AIRN, LOC729603, SLC22A1, SLC22A2, SLC22A3, LPAL2, LPA, PLG, MAP3K4, AGPAT4, AGPAT4-IT1, PRKN, LOC105378098, PACRG, PACRG-AS2, PACRG-AS3, PACRG-AS1, DKFZp451B082, CAHM, QKI, LOC102724152, MEAT6	26	TMEM181 (613209), DYNLT1 (601554), EZR (123900), RSPH3 (615876), TAGAP (609667), FNDC1 (609991), SOD2 (147460), WTAP (605442), ACAT2 (100678), TCP1 (186980), MRPL18 (611831), MAS1 (165180), IGF2R (147280), AIRN (604893), SLC22A1 (602607), SLC22A2 (602608), SLC22A3 (604842), LPAL2 (611682), LPA (152200), PLG (173350), MAP3K4 (602425), AGPAT4 (614795), PRKN (602544), PACRG (608427), CAHM (615930), QKI (609590)	CytoRegions Not Set				false	arr[hg19] 6q25.3q27(158,658,787-165,319,631)x3	chr6:158658787-165319631
LST.OSCHP	3.0	Gain	16	p12.3	6182.875	398	76	UMOD, PDILT, ACSM5, ACSM2A, ACSM2B, ACSM1, THUMPD1, ACSM3, ERI2, REXO5, DCUN1D3, LYRM1, DNAH3, TMEM159, ZP2, ANKS4B, CRYM, CRYM-AS1, SNX29P1, NPIPB3, LOC100190986, SMG1P3, MIR3680-2, MIR3680-1, SLC7A5P2, LOC101927814, METTL9, IGSF6, OTOA, RRN3P1, NPIPB4, UQCRC2, PDZD9, MOSMO, VWA3A, EEF2K, POLR3E, CDR2, LOC440346, MFSD13B, RRN3P3, SMG1P1, NPIPB5, OTOAP1, HS3ST2, USP31, SCNN1G, SCNN1B, COG7, GGA2, EARS2, UBFD1, NDUFAB1, PALB2, DCTN5, PLK1, ERN2, CHP2, PRKCB, MIR1273H, LINC2194, CACNG3, RBBP6, TNRC6A, LINC01567, SLC5A11, ARHGAP17, LOC554206, LINC02175, LCMT1-AS1, LCMT1, LCMT1-AS2, AQP8, ZKSCAN2, HS3ST4, MIR548W	41	UMOD (191845), ACSM5 (614361), ACSM2A (614358), ACSM2B (614359), ACSM1 (614357), THUMPD1 (616662), ACSM3 (145505), DCUN1D3 (616167), LYRM1 (614709), DNAH3 (603334), TMEM159 (611304), ZP2 (182888), ANKS4B (609901), CRYM (123740), METTL9 (609388), IGSF6 (606222), OTOA (607038), UQCRC2 (191329), EEF2K (606968), POLR3E (617815), CDR2 (117340), HS3ST2 (604056), SCNN1G (600761), SCNN1B (600760), COG7 (606978), GGA2 (606005), EARS2 (612799), NDUFAB1 (603836), PALB2 (610355), DCTN5 (612962), PLK1 (602098), ERN2 (604034), PRKCB (176970), CACNG3 (606403), RBBP6 (600938), TNRC6A (610739), SLC5A11 (610238), ARHGAP17 (608293), LCMT1 (610286), AQP8 (603750), HS3ST4 (604059)	CytoRegions Not Set				false	arr[hg19] 16p12.3p12.1(20,352,755-26,535,630)x3	chr16:20352755-26535630
LST.OSCHP	3.0	Gain	1	p13.2	5291.211	402	56	VANGL1, CASQ2, NHLH2, LINC01649, LOC101928977, SLC22A15, MAB21L3, ATP1A1, ATP1A1-AS1, LINC01762, CD58, IGSF3, MIR320B1, C1orf137, CD2, PTGFRN, CD101, LOC101929099, TTF2, MIR942, TRIM45, VTCN1, LINC01525, MAN1A2, LOC100996263, TENT5C, GDAP2, WDR3, SPAG17, TBX15, LOC105378933, WARS2, WARS2-IT1, LOC101929147, LINC01780, HAO2, HAO2-IT1, HSD3B2, HSD3B1, HSD3BP4, LINC00622, ZNF697, PHGDH, HMGCS2, REG4, NBPF7, ADAM30, NOTCH2, NOTCH2NLR, FAM72B, HIST2H2BA, FCGR1B, SRGAP2-AS1, SRGAP2D, SRGAP2B, SRGAP2C	32	VANGL1 (610132), CASQ2 (114251), NHLH2 (162361), SLC22A15 (608275), ATP1A1 (182310), CD58 (153420), IGSF3 (603491), CD2 (186990), PTGFRN (601204), CD101 (604516), TTF2 (604718), TRIM45 (609318), VTCN1 (608162), MAN1A2 (604345), TENT5C (613952), WDR3 (604737), SPAG17 (616554), TBX15 (604127), WARS2 (604733), HAO2 (605176), HSD3B2 (613890), HSD3B1 (109715), PHGDH (606879), HMGCS2 (600234), REG4 (609846), NBPF7 (613997), ADAM30 (604779), NOTCH2 (600275), FAM72B (614711), FCGR1B (601502), SRGAP2B (614703), SRGAP2C (614704)	CytoRegions Not Set				false	arr[hg19] 1p13.2p11.2(115,894,320-121,185,531)x3	chr1:115894320-121185531
LST.OSCHP	3.0	Gain	17	p13.3	968.38	90	16	VPS53, FAM57A, GEMIN4, DBIL5P, GLOD4, MRM3, NXN, LOC101927727, TIMM22, ABR, MIR3183, BHLHA9, TRARG1, YWHAE, CRK, MYO1C	12	VPS53 (615850), FAM57A (611627), GEMIN4 (606969), MRM3 (612600), NXN (612895), TIMM22 (607251), ABR (600365), BHLHA9 (615416), TRARG1 (612211), YWHAE (605066), CRK (164762), MYO1C (606538)	CytoRegions Not Set				false	arr[hg19] 17p13.3(400,958-1,369,338)x3	chr17:400958-1369338
LST.OSCHP	3.0	Gain	1	q43	7348.163	645	97	WDR64, EXO1, BECN2, MAP1LC3C, PLD5, LINC01347, CEP170, SDCCAG8, MIR4677, AKT3, LOC339529, ZBTB18, C1orf100, ADSS, CATSPERE, DESI2, COX20, HNRNPU, SNORA100, LOC101928068, EFCAB2, KIF26B, KIF26B-AS1, SMYD3, LINC01743, TFB2M, CNST, SCCPDH, LINC01341, AHCTF1, ZNF695, ZNF670-ZNF695, ZNF670, ZNF669, FLJ39095, C1orf229, ZNF124, MIR3916, VN1R5, ZNF496, NLRP3, OR2B11, OR2W5, GCSAML, GCSAML-AS1, OR2C3, OR2G2, OR2G3, OR13G1, OR6F1, OR14A2, OR14K1, OR1C1, OR14A16, OR11L1, TRIM58, OR2W3, OR2T8, OR2AJ1, OR2L13, OR2L8, OR2AK2, OR2L1P, OR2L5, OR2L2, OR2L3, OR2M1P, OR2M5, OR2M2, OR2M3, OR2M4, OR2T33, OR2T12, OR2M7, OR14C36, OR2T4, OR2T6, OR2T1, OR2T7, OR2T2, OR2T3, OR2T5, OR2G6, OR2T29, OR2T34, OR2T10, OR2T11, OR2T35, OR2T27, OR14I1, LOC101928226, LYPD8, SH3BP5L, MIR3124, ZNF672, ZNF692, PGBD2	25	EXO1 (606063), BECN2 (615687), MAP1LC3C (609605), CEP170 (613023), SDCCAG8 (613524), AKT3 (611223), ZBTB18 (608433), ADSS (103060), CATSPERE (617510), DESI2 (614638), COX20 (614698), HNRNPU (602869), KIF26B (614026), SMYD3 (608783), TFB2M (607055), CNST (613439), AHCTF1 (610853), ZNF695 (616348), ZNF124 (194631), ZNF496 (613911), NLRP3 (606416), OR13G1 (611677), OR2W3 (616729), LYPD8 (617067), ZNF692 (617758)	CytoRegions Not Set				false	arr[hg19] 1q43q44(241,864,715-249,212,878)x3	chr1:241864715-249212878
LST.OSCHP	3.0	Gain	7	q36.1	5481.992	377	34	XRCC2, ACTR3B, LINC01287, DPP6, LOC101929998, PAXIP1-AS2, PAXIP1, PAXIP1-AS1, HTR5A-AS1, HTR5A, INSIG1, BLACE, LOC100286906, EN2, CNPY1, LOC100506302, RBM33, SHH, LOC389602, LOC285889, LINC01006, LINC00244, RNF32, LMBR1, NOM1, MNX1, MNX1-AS2, MNX1-AS1, UBE3C, DNAJB6, LOC101927914, PTPRN2, MIR153-2, LOC100506585	17	XRCC2 (600375), DPP6 (126141), PAXIP1 (608254), HTR5A (601305), INSIG1 (602055), BLACE (608450), EN2 (131310), CNPY1 (612493), SHH (600725), LINC01006 (610242), RNF32 (610241), LMBR1 (605522), NOM1 (611269), MNX1 (142994), UBE3C (614454), DNAJB6 (611332), PTPRN2 (601698)	CytoRegions Not Set				false	arr[hg19] 7q36.1q36.3(152,200,848-157,682,840)x3	chr7:152200848-157682840
LST.OSCHP	3.0	Gain	7	q11.23	173.488	22	5	YWHAG, SSC4D, ZP3, DTX2, FDPSP2	4	YWHAG (605356), SSC4D (607639), ZP3 (182889), DTX2 (613141)	CytoRegions Not Set				false	arr[hg19] 7q11.23(75,961,646-76,135,134)x3	chr7:75961646-76135134
LST.OSCHP	3.0	Gain	3	q21.2	3467.453	240	49	ZNF148, SNX4, OSBPL11, LOC105374312, MIR548I1, LOC101927056, FAM86JP, ALG1L, ROPN1B, SLC41A3, ALDH1L1, ALDH1L1-AS1, ALDH1L1-AS2, KLF15, CCDC37-DT, CFAP100, ZXDC, UROC1, CHST13, C3orf22, TXNRD3NB, TXNRD3, NUP210P1, CHCHD6, PLXNA1, C3orf56, PRR20G, LINC02016, LINC01471, TPRA1, MIR6825, MIR7976, MCM2, PODXL2, ABTB1, MGLL, KBTBD12, SEC61A1, RUVBL1, RUVBL1-AS1, EEFSEC, DNAJB8, DNAJB8-AS1, GATA2, GATA2-AS1, LOC90246, LINC01565, RPN1, RAB7A	24	ZNF148 (601897), SNX4 (605931), OSBPL11 (606739), SLC41A3 (610803), ALDH1L1 (600249), KLF15 (606465), ZXDC (615746), UROC1 (613012), CHST13 (610124), TXNRD3 (606235), CHCHD6 (615634), PLXNA1 (601055), TPRA1 (608336), MCM2 (116945), PODXL2 (616627), ABTB1 (608308), MGLL (609699), SEC61A1 (609213), RUVBL1 (603449), EEFSEC (607695), DNAJB8 (611337), GATA2 (137295), RPN1 (180470), RAB7A (602298)	CytoRegions Not Set				false	arr[hg19] 3q21.2q21.3(125,075,012-128,542,465)x3	chr3:125075012-128542465
LST.OSCHP	3.0	Gain	4	p16.3	907.619	69	22	ZNF595, ZNF718, ZNF876P, ZNF732, ZNF141, MIR571, ABCA11P, ZNF721, PIGG, TMEM271, LOC105374338, PDE6B, ATP5ME, MYL5, SLC49A3, PCGF3, LOC100129917, CPLX1, GAK, TMEM175, DGKQ, SLC26A1	11	ZNF141 (194648), PIGG (616918), PDE6B (180072), ATP5ME (601519), MYL5 (160782), PCGF3 (617543), CPLX1 (605032), GAK (602052), TMEM175 (616660), DGKQ (601207), SLC26A1 (610130)	CytoRegions Not Set				false	arr[hg19] 4p16.3(69,403-977,022)x3	chr4:69403-977022
LST.OSCHP	3.0	Gain	7	q21.13	10275.776	797	96	ZNF804B, STEAP2-AS1, DPY19L2P4, STEAP1, STEAP2, CFAP69, LOC101927446, GTPBP10, LOC101409256, CLDN12, CDK14, FZD1, MTERF1, AKAP9, CYP51A1, CYP51A1-AS1, LRRD1, KRIT1, ANKIB1, TMBIM7P, GATAD1, PEX1, RBM48, FAM133B, FAM133DP, CDK6, LOC101927497, SAMD9, SAMD9L, HEPACAM2, VPS50, CALCR, MIR653, MIR489, MIR4652, TFPI2, LOC105375401, GNGT1, GNG11, BET1, COL1A2-AS1, COL1A2, CASD1, SGCE, PEG10, PPP1R9A, PON1, PON3, PON2, ASB4, PDK4, DYNC1I1, SLC25A13, MIR591, SEM1, DLX6-AS1, DLX6, DLX5, SDHAF3, TAC1, ASNS, CZ1P-ASNS, MIR5692A1, MIR5692A2, MIR5692C2, CCZ1P-OR7E38P, OCM2, LMTK2, BHLHA15, TECPR1, BRI3, BAIAP2L1, NPTX2, TMEM130, TRRAP, MIR3609, SCARNA28, LOC101927550, SMURF1, KPNA7, MYH16, ARPC1A, ARPC1B, PDAP1, BUD31, PTCD1, ATP5MF-PTCD1, CPSF4, ATP5MF, ZNF789, ZNF394, ZKSCAN5, FAM200A, ZNF655, TMEM225B, ZSCAN25	59	STEAP1 (604415), STEAP2 (605094), CFAP69 (617949), GTPBP10 (610920), CLDN12 (611232), CDK14 (610679), FZD1 (603408), MTERF1 (602318), AKAP9 (604001), CYP51A1 (601637), KRIT1 (604214), GATAD1 (614518), PEX1 (602136), CDK6 (603368), SAMD9 (610456), SAMD9L (611170), HEPACAM2 (614133), VPS50 (616465), CALCR (114131), MIR489 (614523), TFPI2 (600033), GNGT1 (189970), GNG11 (604390), BET1 (605456), COL1A2 (120160), CASD1 (611686), SGCE (604149), PEG10 (609810), PPP1R9A (602468), PON1 (168820), PON3 (602720), PON2 (602447), ASB4 (605761), PDK4 (602527), DYNC1I1 (603772), SLC25A13 (603859), SEM1 (601285), DLX6 (600030), DLX5 (600028), SDHAF3 (615773), TAC1 (162320), ASNS (108370), LMTK2 (610989), BHLHA15 (608606), TECPR1 (614781), BRI3 (615628), BAIAP2L1 (611877), NPTX2 (600750), TRRAP (603015), SMURF1 (605568), KPNA7 (614107), ARPC1A (604220), ARPC1B (604223), PDAP1 (607075), BUD31 (603477), PTCD1 (614774), CPSF4 (603052), ZKSCAN5 (611272), ZNF655 (617891)	CytoRegions Not Set				false	arr[hg19] 7q21.13q22.1(88,961,251-99,237,027)x3	chr7:88961251-99237027
LST.OSCHP	3.0	Gain	7	p22.1	1271.52	129	27	ZNF890P, WIPI2, SLC29A4, TNRC18, LOC100129484, FBXL18, MIR589, LOC221946, ACTB, FSCN1, RNF216, RNF216-IT1, MIR6874, ZNF815P, OCM, CCZ1, RSPH10B, RSPH10B2, PMS2, AIMP2, SNORA80D, EIF2AK1, ANKRD61, USP42, CYTH3, FAM220A, RAC1	13	WIPI2 (609225), SLC29A4 (609149), FBXL18 (609084), ACTB (102630), FSCN1 (602689), RNF216 (609948), OCM (164795), PMS2 (600259), AIMP2 (600859), EIF2AK1 (613635), CYTH3 (605081), FAM220A (616628), RAC1 (602048)	CytoRegions Not Set				false	arr[hg19] 7p22.1(5,159,571-6,431,091)x3	chr7:5159571-6431091
LST.OSCHP	3.0	Gain	4	q35.2	281.162	18	0		0		CytoRegions Not Set				false	arr[hg19] 4q35.2(190,057,165-190,338,327)x3	chr4:190057165-190338327
LST.OSCHP	3.0	Gain	5	q14.3	1430.798	91	0		0		CytoRegions Not Set				false	arr[hg19] 5q14.3q15(91,226,957-92,657,755)x3	chr5:91226957-92657755
LST.OSCHP	3.0	Gain	5	q33.2	249.27	18	0		0		CytoRegions Not Set				false	arr[hg19] 5q33.2(155,224,369-155,473,639)x3	chr5:155224369-155473639
LST.OSCHP	3.0	Gain	6	p22.3	274.929	19	0		0		CytoRegions Not Set				false	arr[hg19] 6p22.3(23,593,535-23,868,464)x3	chr6:23593535-23868464
LST.OSCHP	2.67	Gain	7	q21.12	1807.079	158	10	ABCB1, RUNDC3B, SLC25A40, DBF4, ADAM22, SRI, LOC102723885, STEAP4, ZNF804B, TEX47	7	ABCB1 (171050), RUNDC3B (617295), SLC25A40 (610821), DBF4 (604281), ADAM22 (603709), SRI (182520), STEAP4 (611098)	CytoRegions Not Set				false	arr[hg19] 7q21.12q21.13(87,141,813-88,948,892)x2-3	chr7:87141813-88948892
LST.OSCHP	2.67	Gain	4	q31.23	996.834	68	3	ARHGAP10, NR3C2, LOC105377480	2	ARHGAP10 (609746), NR3C2 (600983)	CytoRegions Not Set				false	arr[hg19] 4q31.23(148,897,029-149,893,863)x2-3	chr4:148897029-149893863
LST.OSCHP	2.67	Gain	6	p22.3	663.863	49	3	ATXN1, LOC101928433, STMND1	1	ATXN1 (601556)	CytoRegions Not Set				false	arr[hg19] 6p22.3(16,577,291-17,241,154)x2-3	chr6:16577291-17241154
LST.OSCHP	2.67	Gain	18	q21.33	2780.09	232	18	BCL2, KDSR, VPS4B, SERPINB5, SERPINB12, SERPINB13, SERPINB4, SERPINB3, SERPINB11, SERPINB7, SERPINB2, SERPINB10, HMSD, SERPINB8, LINC00305, LINC01924, LINC01538, CDH7	16	BCL2 (151430), KDSR (136440), VPS4B (609983), SERPINB5 (154790), SERPINB12 (615662), SERPINB13 (604445), SERPINB4 (600518), SERPINB3 (600517), SERPINB11 (615682), SERPINB7 (603357), SERPINB2 (173390), SERPINB10 (602058), HMSD (612086), SERPINB8 (601697), LINC00305 (617489), CDH7 (605806)	CytoRegions Not Set				false	arr[hg19] 18q21.33q22.1(60,888,800-63,668,890)x2-3	chr18:60888800-63668890
LST.OSCHP	2.67	Gain	4	q32.1	1753.353	115	5	C4orf45, RAPGEF2, MIR3688-1, MIR3688-2, LINC02233	1	RAPGEF2 (609530)	CytoRegions Not Set				false	arr[hg19] 4q32.1(159,922,324-161,675,677)x2-3	chr4:159922324-161675677
LST.OSCHP	2.67	Gain	7	p22.3	201.386	19	4	C7orf50, ZFAND2A, LOC101927021, UNCX	1	ZFAND2A (610699)	CytoRegions Not Set				false	arr[hg19] 7p22.3(1,169,747-1,371,133)x2-3	chr7:1169747-1371133
LST.OSCHP	2.67	Gain	9	p24.3	3346.565	225	14	C9orf66, DOCK8, KANK1, DMRT1, DMRT3, LINC01230, DMRT2, SMARCA2, VLDLR-AS1, VLDLR, KCNV2, PUM3, LINC01231, RFX3	10	DOCK8 (611432), KANK1 (607704), DMRT1 (602424), DMRT3 (614754), DMRT2 (604935), SMARCA2 (600014), VLDLR (192977), KCNV2 (607604), PUM3 (609960), RFX3 (601337)	CytoRegions Not Set				false	arr[hg19] 9p24.3p24.2(204,737-3,551,302)x2-3	chr9:204737-3551302
LST.OSCHP	2.67	Gain	1	q25.3	315.785	20	1	CACNA1E	1	CACNA1E (601013)	CytoRegions Not Set				false	arr[hg19] 1q25.3(181,295,502-181,611,287)x2-3	chr1:181295502-181611287
LST.OSCHP	2.67	Gain	6	p22.3	1016.314	116	11	CAP2, FAM8A1, NUP153, LOC105374952, KIF13A, NHLRC1, TPMT, KDM1B, DEK, RNF144B, MIR548A1HG	6	NUP153 (603948), KIF13A (605433), NHLRC1 (608072), TPMT (187680), KDM1B (613081), DEK (125264)	CytoRegions Not Set				false	arr[hg19] 6p22.3(17,528,149-18,544,463)x2-3	chr6:17528149-18544463
LST.OSCHP	2.67	Gain	6	p22.3	1822.697	117	5	CASC15, NBAT1, PRL, HDGFL1, LOC105374972	3	CASC15 (616610), NBAT1 (616206), PRL (176760)	CytoRegions Not Set				false	arr[hg19] 6p22.3(21,753,892-23,576,589)x2-3	chr6:21753892-23576589
LST.OSCHP	2.67	Gain	11	q12.2	4623.891	370	187	CCDC86, PTGDR2, ZP1, PRPF19, TMEM109, TMEM132A, SLC15A3, CD6, CD5, VPS37C, PGA3, PGA4, PGA5, VWCE, DDB1, TKFC, CYB561A3, TMEM138, TMEM216, CPSF7, SDHAF2, PPP1R32, MIR4488, LRRC10B, SYT7, LOC101927495, RPLP0P2, DAGLA, MYRF, DKFZP434K028, TMEM258, MIR611, FEN1, FADS1, MIR1908, FADS2, FADS3, MIR6746, RAB3IL1, BEST1, FTH1, INCENP, SCGB1D1, SCGB2A1, SCGB1D2, SCGB2A2, SCGB1D4, ASRGL1, SCGB1A1, AHNAK, EEF1G, MIR3654, MIR6747, TUT1, MTA2, EML3, ROM1, B3GAT3, GANAB, INTS5, C11orf98, LBHD1, CSKMT, SNORA57, UQCC3, UBXN1, LRRN4CL, BSCL2, HNRNPUL2-BSCL2, GNG3, HNRNPUL2, TTC9C, ZBTB3, POLR2G, TAF6L, TMEM179B, MIR6748, TMEM223, NXF1, MIR6514, STX5, LOC105369332, WDR74, SNHG1, SNORD22, SNORD31, SNORD30, SNORD29, SNORD28, SNORD27, SNORD26, SNORD25, SLC3A2, CHRM1, SLC22A6, SLC22A8, SLC22A24, SLC22A25, SLC22A10, SLC22A9, HRASLS5, LGALS12, RARRES3, HRASLS2, PLA2G16, ATL3, RTN3, C11orf95, SPINDOC, MARK2, RCOR2, NAA40, COX8A, OTUB1, MACROD1, FLRT1, STIP1, FERMT3, TRPT1, NUDT22, DNAJC4, VEGFB, FKBP2, PPP1R14B, LOC105369340, PLCB3, BAD, GPR137, KCNK4, KCNK4-TEX40, CATSPERZ, ESRRA, TRMT112, PRDX5, CCDC88B, MIR7155, RPS6KA4, MIR1237, LOC100996455, SLC22A11, SLC22A12, NRXN2, RASGRP2, PYGM, SF1, MAP4K2, MEN1, CDC42BPG, EHD1, MIR194-2HG, MIR192, MIR194-2, ATG2A, MIR6750, MIR6749, PPP2R5B, GPHA2, MAJIN, BATF2, ARL2, ARL2-SNX15, MIR6879, SNX15, SAC3D1, NAALADL1, CDCA5, ZFPL1, TMEM262, VPS51, TM7SF2, ZNHIT2, FAU, MRPL49, SYVN1, MIR6751, SPDYC, LOC728975, CAPN1, SLC22A20P, POLA2, CDC42EP2, DPF2, TIGD3, SLC25A45, FRMD8, NEAT1, MIR612	133	CCDC86 (611293), PTGDR2 (604837), ZP1 (195000), PRPF19 (608330), TMEM132A (617363), SLC15A3 (610408), CD6 (186720), CD5 (153340), VPS37C (610038), PGA4 (169720), PGA5 (169730), VWCE (611115), DDB1 (600045), TKFC (615844), TMEM138 (614459), TMEM216 (613277), SDHAF2 (613019), SYT7 (604146), DAGLA (614015), MYRF (608329), TMEM258 (617615), FEN1 (600393), FADS1 (606148), FADS2 (606149), FADS3 (606150), BEST1 (607854), FTH1 (134770), INCENP (604411), SCGB1D1 (615060), SCGB2A1 (604398), SCGB1D2 (615061), SCGB2A2 (605562), SCGB1D4 (615062), ASRGL1 (609212), SCGB1A1 (192020), AHNAK (103390), EEF1G (130593), TUT1 (610641), MTA2 (603947), ROM1 (180721), B3GAT3 (606374), GANAB (104160), INTS5 (611349), CSKMT (617897), UQCC3 (616097), UBXN1 (616378), BSCL2 (606158), GNG3 (608941), POLR2G (602013), TAF6L (602946), NXF1 (602647), STX5 (603189), WDR74 (617947), SNHG1 (603222), SNORD22 (603223), SNORD31 (603230), SNORD30 (603229), SNORD29 (603228), SNORD28 (603227), SNORD27 (603226), SNORD26 (603225), SNORD25 (603224), SLC3A2 (158070), CHRM1 (118510), SLC22A6 (607582), SLC22A8 (607581), SLC22A24 (611698), SLC22A25 (610792), SLC22A10 (607580), SLC22A9 (607579), HRASLS5 (611474), LGALS12 (606096), RARRES3 (605092), HRASLS2 (613866), PLA2G16 (613867), ATL3 (609369), RTN3 (604249), C11orf95 (615699), MARK2 (600526), RCOR2 (616019), COX8A (123870), OTUB1 (608337), MACROD1 (610400), FLRT1 (604806), STIP1 (605063), FERMT3 (607901), TRPT1 (610470), DNAJC4 (604189), VEGFB (601398), FKBP2 (186946), PPP1R14B (601140), PLCB3 (600230), BAD (603167), KCNK4 (605720), CATSPERZ (617511), ESRRA (601998), PRDX5 (606583), CCDC88B (611205), RPS6KA4 (603606), SLC22A11 (607097), SLC22A12 (607096), NRXN2 (600566), RASGRP2 (605577), PYGM (608455), SF1 (601516), MAP4K2 (603166), MEN1 (613733), CDC42BPG (613991), EHD1 (605888), MIR192 (610939), MIR194-2 (610941), ATG2A (616225), PPP2R5B (601644), GPHA2 (609651), MAJIN (617130), BATF2 (614983), ARL2 (601175), SNX15 (605964), NAALADL1 (602640), CDCA5 (609374), VPS51 (615738), TM7SF2 (603414), ZNHIT2 (604575), FAU (134690), MRPL49 (606866), SYVN1 (608046), SPDYC (614030), CAPN1 (114220), SLC22A20P (611696), CDC42EP2 (606132), DPF2 (601671), SLC25A45 (610825), NEAT1 (612769)	CytoRegions Not Set				false	arr[hg19] 11q12.2q13.1(60,602,296-65,226,187)x2-3	chr11:60602296-65226187
LST.OSCHP	2.67	Gain	4	q21.21	283.406	20	2	CFAP299, BMP3	1	BMP3 (112263)	CytoRegions Not Set				false	arr[hg19] 4q21.21(81,703,378-81,986,784)x2-3	chr4:81703378-81986784
LST.OSCHP	2.67	Gain	7	q33	6419.001	620	56	CHRM2, LOC349160, MIR490, PTN, DGKI, CREB3L2, LOC100130880, AKR1D1, MIR4468, TRIM24, SVOPL, ATP6V0A4, TMEM213, KIAA1549, ZC3HAV1L, ZC3HAV1, TTC26, UBN2, LUC7L2, FMC1, C7orf55-LUC7L2, LOC100129148, KLRG2, CLEC2L, HIPK2, TBXAS1, PARP12, KDM7A, KDM7A-DT, SLC37A3, RAB19, MKRN1, DENND2A, ADCK2, NDUFB2-AS1, NDUFB2, BRAF, MRPS33, TMEM178B, AGK, KIAA1147, WEE2-AS1, WEE2, SSBP1, TAS2R3, TAS2R4, TAS2R5, PRSS37, OR9A4, CLEC5A, TAS2R38, MGAM, MGAM2, MOXD2P, PRSS58, TRY2P	30	CHRM2 (118493), MIR490 (616972), PTN (162095), DGKI (604072), CREB3L2 (608834), AKR1D1 (604741), TRIM24 (603406), SVOPL (611700), ATP6V0A4 (605239), KIAA1549 (613344), ZC3HAV1 (607312), TTC26 (617453), UBN2 (613841), LUC7L2 (613056), HIPK2 (606868), TBXAS1 (274180), PARP12 (612481), MKRN1 (607754), NDUFB2 (603838), BRAF (164757), MRPS33 (611993), AGK (610345), WEE2 (614084), SSBP1 (600439), TAS2R3 (604868), TAS2R4 (604869), TAS2R5 (605062), CLEC5A (604987), TAS2R38 (607751), MGAM (154360)	CytoRegions Not Set				false	arr[hg19] 7q33q34(135,733,874-142,152,875)x2-3	chr7:135733874-142152875
LST.OSCHP	2.67	Gain	7	p15.3	252.558	19	4	CLK2P1, CCDC126, FAM221A, STK31	1	STK31 (605790)	CytoRegions Not Set				false	arr[hg19] 7p15.3(23,603,596-23,856,154)x2-3	chr7:23603596-23856154
LST.OSCHP	2.67	Gain	4	p16.1	210.499	19	1	CLNK	1	CLNK (611434)	CytoRegions Not Set				false	arr[hg19] 4p16.1(10,500,430-10,710,929)x2-3	chr4:10500430-10710929
LST.OSCHP	2.67	Gain	7	q33	285.487	22	5	CNOT4, NUP205, STMP1, SLC13A4, FAM180A	3	CNOT4 (604911), NUP205 (614352), SLC13A4 (604309)	CytoRegions Not Set				false	arr[hg19] 7q33(135,173,728-135,459,215)x2-3	chr7:135173728-135459215
LST.OSCHP	2.67	Gain	1	p32.2	6202.27	544	42	DAB1, OMA1, TACSTD2, MYSM1, JUN, LINC01135, LINC01358, HSD52, FGGY, MIR4711, LOC101926944, HOOK1, CYP2J2, C1orf87, LINC01748, LOC101926964, NFIA-AS2, NFIA, NFIA-AS1, MGC34796, TM2D1, PATJ, MIR3116-1, MIR3116-2, L1TD1, KANK4, USP1, DOCK7, ANGPTL3, ATG4C, LINC01739, LINC00466, FOXD3-AS1, FOXD3, MIR6068, ALG6, ITGB3BP, EFCAB7, DLEU2L, PGM1, ROR1, ROR1-AS1	22	DAB1 (603448), OMA1 (617081), TACSTD2 (137290), MYSM1 (612176), JUN (165160), FGGY (611370), HOOK1 (607820), CYP2J2 (601258), NFIA (600727), TM2D1 (610080), PATJ (603199), KANK4 (614612), USP1 (603478), DOCK7 (615730), ANGPTL3 (604774), ATG4C (611339), FOXD3 (611539), ALG6 (604566), ITGB3BP (605494), EFCAB7 (617632), PGM1 (171900), ROR1 (602336)	CytoRegions Not Set				false	arr[hg19] 1p32.2p31.3(58,456,327-64,658,597)x2-3	chr1:58456327-64658597
LST.OSCHP	2.67	Gain	18	q21.2	139.598	18	3	DCC, LINC01919, LINC01917	1	DCC (120470)	CytoRegions Not Set				false	arr[hg19] 18q21.2(51,024,805-51,164,403)x2-3	chr18:51024805-51164403
LST.OSCHP	2.67	Gain	17	p13.3	1982.778	154	55	DPH1, OVCA2, MIR132, MIR212, HIC1, SMG6, LOC101927839, SRR, TSR1, SNORD91B, SNORD91A, SGSM2, MNT, LOC284009, METTL16, PAFAH1B1, CLUH, MIR6776, LOC105371592, CCDC92B, MIR1253, RAP1GAP2, LOC101927911, OR1D5, OR1D2, OR1E3, OR1G1, LOC100288728, OR1A2, OR1A1, OR1D4, OR3A2, OR3A1, OR3A4P, OR1E1, OR3A3, OR1E2, SPATA22, ASPA, TRPV3, TRPV1, SHPK, CTNS, TAX1BP3, P2RX5-TAX1BP3, EMC6, P2RX5, ITGAE, HASPIN, NCBP3, CAMKK1, P2RX1, ATP2A3, LINC01975, ZZEF1	27	DPH1 (603527), OVCA2 (607896), MIR132 (610016), MIR212 (613487), HIC1 (603825), SMG6 (610963), SRR (606477), TSR1 (611214), SGSM2 (611418), MNT (603039), PAFAH1B1 (601545), CLUH (616184), OR1D2 (164342), SPATA22 (617673), ASPA (608034), TRPV3 (607066), TRPV1 (602076), SHPK (605060), CTNS (606272), TAX1BP3 (616484), P2RX5 (602836), ITGAE (604682), HASPIN (609240), NCBP3 (616624), CAMKK1 (611411), P2RX1 (600845), ATP2A3 (601929)	CytoRegions Not Set				false	arr[hg19] 17p13.3p13.2(1,939,970-3,922,748)x2-3	chr17:1939970-3922748
LST.OSCHP	2.67	Gain	1	p34.2	318.398	61	15	EBNA1BP2, MIR6733, CFAP57, TMEM125, C1orf210, TIE1, MPL, CDC20, ELOVL1, MIR6734, MED8, SZT2, SZT2-AS1, MIR6735, HYI	8	EBNA1BP2 (614443), CFAP57 (614259), TIE1 (600222), MPL (159530), CDC20 (603618), ELOVL1 (611813), MED8 (607956), SZT2 (615463)	CytoRegions Not Set				false	arr[hg19] 1p34.2(43,623,110-43,941,508)x2-3	chr1:43623110-43941508
LST.OSCHP	2.67	Gain	7	p11.2	22.79	18	2	EGFR, EGFR-AS1	1	EGFR (131550)	CytoRegions Not Set				false	arr[hg19] 7p11.2(55,224,798-55,247,588)x2-3	chr7:55224798-55247588
LST.OSCHP	2.67	Gain	6	p24.2	5355.249	373	30	ELOVL2, ELOVL2-AS1, SMIM13, ERVFRD-1, NEDD9, TMEM170B, ADTRP, LOC101928253, HIVEP1, EDN1, LINC02530, PHACTR1, TBC1D7-LOC100130357, LOC100130357, TBC1D7, GFOD1, SIRT5, NOL7, RANBP9, MCUR1, RNF182, CD83, LINC01108, JARID2, JARID2-AS1, DTNBP1, MYLIP, MIR4639, GMPR, ATXN1	18	ELOVL2 (611814), ERVFRD-1 (610524), NEDD9 (602265), ADTRP (614348), HIVEP1 (194540), EDN1 (131240), PHACTR1 (608723), TBC1D7 (612655), SIRT5 (604483), NOL7 (611533), RANBP9 (603854), MCUR1 (616952), CD83 (604534), JARID2 (601594), DTNBP1 (607145), MYLIP (610082), GMPR (139265), ATXN1 (601556)	CytoRegions Not Set				false	arr[hg19] 6p24.2p22.3(10,982,972-16,338,221)x2-3	chr6:10982972-16338221
LST.OSCHP	2.67	Gain	1	p11.2	23730.3	29	20	EMBP1, ANKRD20A12P, LOC102723769, MIR6077, LOC100132057, LINC01138, PPIAL4G, FAM72D, FAM72C, NBPF20, NBPF19, LINC00623, LINC00869, PPIAL4C, PPIAL4A, NBPF8, PFN1P2, NBPF9, LOC100996724, PDE4DIP	8	FAM72D (614712), FAM72C (616853), NBPF20 (614007), NBPF19 (614006), NBPF8 (613998), PFN1P2 (608609), NBPF9 (613999), PDE4DIP (608117)	CytoRegions Not Set				false	arr[hg19] 1p11.2q21.1(121,196,876-144,927,176)x2-3	chr1:121196876-144927176
LST.OSCHP	2.67	Gain	10	q23.1	6541.022	668	33	FAM213A, TSPAN14, LOC101929574, LOC102723703, SH2D4B, LOC105378386, NRG3, NRG3-AS1, LOC105378397, GHITM, CERNA2, C10orf99, CDHR1, LRIT2, LRIT1, RGR, LINC00858, CCSER2, LINC01519, LOC101929646, LOC101929662, LINC01520, GRID1-AS1, GRID1, MIR346, WAPL, OPN4, LDB3, BMPR1A, MMRN2, SNCG, ADIRF, AGAP11	15	FAM213A (617165), NRG3 (605533), CERNA2 (617434), C10orf99 (617775), CDHR1 (609502), LRIT1 (616103), RGR (600342), GRID1 (610659), MIR346 (611190), WAPL (610754), OPN4 (606665), LDB3 (605906), BMPR1A (601299), MMRN2 (608925), SNCG (602998)	CytoRegions Not Set				false	arr[hg19] 10q23.1q23.2(82,191,642-88,732,664)x2-3	chr10:82191642-88732664
LST.OSCHP	2.67	Gain	9	p13.1	6342.989	30	37	FAM95C, ANKRD18A, FAM201A, CNTNAP3, SPATA31A1, FAM74A1, ZNF658B, LOC105379450, SPATA31A3, FAM74A3, ZNF658, SPATA31A5, SPATA31A7, FAM74A6, GLIDR, FGF7P3, LOC102724238, LOC554249, ANKRD20A2, ANKRD20A3, FAM95B1, LOC105379252, GXYLT1P3, FOXD4L4, LOC101928381, LOC101929583, LOC101928195, LOC286297, AQP7P3, LOC642929, FAM74A7, SPATA31A6, CNTNAP3B, CNTNAP3P2, XLOC_007697, LOC101927827, LOC103908605	4	CNTNAP3 (610517), ZNF658 (616290), SPATA31A7 (616584), FOXD4L4 (611085)	CytoRegions Not Set				false	arr[hg19] 9p13.1p11.2(38,524,379-44,867,368)x2-3	chr9:38524379-44867368
LST.OSCHP	2.67	Gain	4	q35.2	42.518	18	1	FAT1	1	FAT1 (600976)	CytoRegions Not Set				false	arr[hg19] 4q35.2(187,590,945-187,633,463)x2-3	chr4:187590945-187633463
LST.OSCHP	2.67	Gain	4	p16.3	734.554	39	17	FGFRL1, RNF212, LOC105374344, TMED11P, SPON2, LOC100130872, CTBP1-AS, CTBP1, CTBP1-DT, MAEA, UVSSA, CRIPAK, NKX1-1, FAM53A, SLBP, TMEM129, TACC3	12	FGFRL1 (605830), RNF212 (612041), SPON2 (605918), CTBP1 (602618), MAEA (606801), UVSSA (614632), CRIPAK (610203), NKX1-1 (617869), FAM53A (617229), SLBP (602422), TMEM129 (615975), TACC3 (605303)	CytoRegions Not Set				false	arr[hg19] 4p16.3(1,006,771-1,741,325)x2-3	chr4:1006771-1741325
LST.OSCHP	2.67	Gain	1	q43	188.008	19	5	FH, KMO, OPN3, CHML, WDR64	4	FH (136850), KMO (603538), OPN3 (606695), CHML (118825)	CytoRegions Not Set				false	arr[hg19] 1q43(241,665,322-241,853,330)x2-3	chr1:241665322-241853330
LST.OSCHP	2.67	Gain	4	q12	635.331	59	7	FIP1L1, LNX1, LNX1-AS1, LNX1-AS2, LOC100506444, RPL21P44, CHIC2	3	FIP1L1 (607686), LNX1 (609732), CHIC2 (604332)	CytoRegions Not Set				false	arr[hg19] 4q12(54,283,312-54,918,643)x2-3	chr4:54283312-54918643
LST.OSCHP	2.67	Gain	6	q21	46685.565	3433	287	FYN, LINC02527, WISP3, TUBE1, FAM229B, LAMA4, LOC101927640, RFPL4B, LINC02518, LINC02541, MARCKS, LINC01268, FLJ34503, HDAC2, HDAC2-AS2, HS3ST5, LINC02534, FRK, TPI1P3, NT5DC1, COL10A1, TSPYL4, DSE, TSPYL1, LOC100287467, CALHM6, TRAPPC3L, CALHM5, CALHM4, RWDD1, RSPH4A, ZUP1, KPNA5, FAM162B, GPRC6A, RFX6, VGLL2, ROS1, DCBLD1, GOPC, LOC101927919, NUS1, SLC35F1, LOC105377967, CEP85L, BRD7P3, PLN, SELENOKP3, MCM9, ASF1A, FAM184A, MIR548B, MAN1A1, LOC285762, LOC105377975, MIR3144, TBC1D32, GJA1, HSF2, SERINC1, PKIB, FABP7, SMPDL3A, CLVS2, TRDN, TRDN-AS1, NKAIN2, RNF217-AS1, RNF217, TPD52L1, LOC100126584, HDDC2, LINC02523, HEY2, NCOA7, NCOA7-AS1, HINT3, TRMT11, MIR5695, CENPW, MIR588, RSPO3, RNF146, ECHDC1, KIAA0408, SOGA3, C6orf58, THEMIS, PTPRK, LOC101928140, LAMA2, ARHGAP18, TMEM244, L3MBTL3, SAMD3, TMEM200A, SMLR1, EPB41L2, AKAP7, ARG1, MED23, ENPP3, OR2A4, CTAGE9, MIR548H5, ENPP1, CTGF, MIR548AJ1, LINC01013, MOXD1, STX7, TAAR9, TAAR8, TAAR6, TAAR5, TAAR3P, TAAR2, TAAR1, VNN1, VNN3, VNN2, SLC18B1, RPS12, SNORD101, SNORD100, SNORA33, LINC00326, EYA4, TARID, LINC01312, TCF21, TBPL1, SLC2A12, HMGA1P7, SGK1, LOC101928231, LINC01010, LOC101928304, ALDH8A1, HBS1L, MIR3662, MYB, MIR548A2, AHI1, LINC00271, PDE7B, LOC644135, MTFR2, BCLAF1, MAP7, MAP3K5, LOC101928461, LOC101928429, PEX7, SLC35D3, NHEG1, IL20RA, IL22RA2, IFNGR1, OLIG3, LOC102723649, LINC02539, LOC100130476, TNFAIP3, LINC02528, PERP, ARFGEF3, PBOV1, HEBP2, NHSL1, MIR3145, FLJ46906, GVQW2, CCDC28A, ECT2L, REPS1, ABRACL, HECA, TXLNB, CITED2, LINC01625, FILNC1, LOC100507477, LOC103352541, MIR3668, MIR4465, NMBR, GJE1, VTA1, ADGRG6, LOC153910, HIVEP2, LINC01277, AIG1, ADAT2, PEX3, FUCA2, PHACTR2-AS1, PHACTR2, LTV1, ZC2HC1B, PLAGL1, HYMAI, SF3B5, STX11, UTRN, SNORA98, EPM2A, LOC100507557, FBXO30, SHPRH, GRM1, RAB32, LOC101928661, ADGB, KATNBL1P6, STXBP5-AS1, LUADT1, STXBP5, SAMD5, SASH1, UST, UST-AS1, LOC105378047, TAB2, TAB2-AS1, SUMO4, ZC3H12D, PPIL4, GINM1, RPS18P9, KATNA1, LATS1, LOC645967, NUP43, PCMT1, LRP11, RAET1E-AS1, RAET1E, RAET1G, LOC105378052, ULBP2, ULBP1, RAET1K, RAET1L, ULBP3, PPP1R14C, IYD, PLEKHG1, MTHFD1L, LOC102723831, AKAP12, ZBTB2, RMND1, ARMT1, CCDC170, ESR1, SYNE1, MIR3163, SYNE1-AS1, MYCT1, VIP, FBXO5, MTRF1L, RGS17, OPRM1, IPCEF1, CNKSR3, SCAF8, MIR1273C, TIAM2, TFB1M, CLDN20, NOX3, LOC105378068, MIR1202, SNORD28B, ARID1B, MIR4466, TMEM242, ZDHHC14, MIR3692, SNX9, SYNJ2, SYNJ2-IT1, SERAC1, GTF2H5	160	FYN (137025), WISP3 (603400), TUBE1 (607345), LAMA4 (600133), MARCKS (177061), HDAC2 (605164), HS3ST5 (609407), FRK (606573), COL10A1 (120110), DSE (605942), TSPYL1 (604714), CALHM6 (617305), TRAPPC3L (614137), RSPH4A (612647), KPNA5 (604545), GPRC6A (613572), RFX6 (612659), VGLL2 (609979), ROS1 (165020), GOPC (606845), NUS1 (610463), PLN (172405), MCM9 (610098), ASF1A (609189), MAN1A1 (604344), TBC1D32 (615867), GJA1 (121014), HSF2 (140581), SERINC1 (614548), PKIB (606914), FABP7 (602965), SMPDL3A (610728), CLVS2 (616945), TRDN (603283), NKAIN2 (609758), RNF217-AS1 (602532), TPD52L1 (604069), HEY2 (604674), NCOA7 (609752), HINT3 (609998), CENPW (611264), RSPO3 (610574), RNF146 (612137), ECHDC1 (612136), THEMIS (613607), PTPRK (602545), LAMA2 (156225), ARHGAP18 (613351), EPB41L2 (603237), AKAP7 (604693), ARG1 (608313), MED23 (605042), ENPP3 (602182), ENPP1 (173335), CTGF (121009), MOXD1 (609000), STX7 (603217), TAAR9 (608282), TAAR8 (606927), TAAR6 (608923), TAAR5 (607405), TAAR2 (604849), TAAR1 (609333), VNN1 (603570), VNN3 (606592), VNN2 (603571), SLC18B1 (613361), RPS12 (603660), EYA4 (603550), TARID (616058), TCF21 (603306), TBPL1 (605521), SLC2A12 (610372), SGK1 (602958), ALDH8A1 (606467), HBS1L (612450), MYB (189990), AHI1 (608894), PDE7B (604645), BCLAF1 (612588), MAP7 (604108), MAP3K5 (602448), PEX7 (601757), SLC35D3 (612519), IL20RA (605620), IL22RA2 (606648), IFNGR1 (107470), OLIG3 (609323), TNFAIP3 (191163), PERP (609301), ARFGEF3 (617411), PBOV1 (605669), HEBP2 (605825), CCDC28A (615353), REPS1 (614825), HECA (607977), TXLNB (611438), CITED2 (602937), NMBR (162341), VTA1 (610902), ADGRG6 (612243), HIVEP2 (143054), AIG1 (608514), ADAT2 (615388), PEX3 (603164), FUCA2 (136820), PHACTR2 (608724), PLAGL1 (603044), HYMAI (606546), SF3B5 (617847), STX11 (605014), UTRN (128240), EPM2A (607566), FBXO30 (609101), SHPRH (608048), GRM1 (604473), RAB32 (612906), ADGB (614630), STXBP5 (604586), SASH1 (607955), UST (610752), TAB2 (605101), SUMO4 (608829), ZC3H12D (611106), PPIL4 (607609), KATNA1 (606696), LATS1 (603473), NUP43 (608141), PCMT1 (176851), RAET1E (609243), RAET1G (609244), ULBP2 (605698), ULBP1 (605697), RAET1L (611047), ULBP3 (605699), PPP1R14C (613242), IYD (612025), MTHFD1L (611427), AKAP12 (604698), ZBTB2 (616595), RMND1 (614917), ARMT1 (616332), ESR1 (133430), SYNE1 (608441), MYCT1 (616805), VIP (192320), FBXO5 (606013), MTRF1L (613542), RGS17 (607191), OPRM1 (600018), CNKSR3 (617476), SCAF8 (616024), TIAM2 (604709), TFB1M (607033), NOX3 (607105), ARID1B (614556), SNX9 (605952), SYNJ2 (609410), SERAC1 (614725), GTF2H5 (608780)	CytoRegions Not Set				false	arr[hg19] 6q21q25.3(111,963,702-158,649,267)x2-3	chr6:111963702-158649267
LST.OSCHP	2.67	Gain	4	p12	18.891	2	1	GABRB1	1	GABRB1 (137190)	CytoRegions Not Set				false	arr[hg19] 4p12(47,368,797-47,387,688)x2-3	chr4:47368797-47387688
LST.OSCHP	2.67	Gain	7	q36.1	203.665	26	3	GALNTL5, GALNT11, KMT2C	3	GALNTL5 (615133), GALNT11 (615130), KMT2C (606833)	CytoRegions Not Set				false	arr[hg19] 7q36.1(151,716,448-151,920,113)x2-3	chr7:151716448-151920113
LST.OSCHP	2.67	Gain	4	q32.1	329.142	19	2	GRIA2, LINC02433	1	GRIA2 (138247)	CytoRegions Not Set				false	arr[hg19] 4q32.1(158,275,556-158,604,698)x2-3	chr4:158275556-158604698
LST.OSCHP	2.67	Gain	7	p15.2	239.816	19	3	HIBADH, TSL, TAX1BP1	2	HIBADH (608475), TAX1BP1 (605326)	CytoRegions Not Set				false	arr[hg19] 7p15.2(27,556,705-27,796,521)x2-3	chr7:27556705-27796521
LST.OSCHP	2.67	Gain	6	p21.32	209.779	23	6	HLA-DRB5, HLA-DRB6, HLA-DRB1, HLA-DQA1, HLA-DQB1, HLA-DQB1-AS1	4	HLA-DRB5 (604776), HLA-DRB1 (142857), HLA-DQA1 (146880), HLA-DQB1 (604305)	CytoRegions Not Set				false	arr[hg19] 6p21.32(32,441,007-32,650,786)x2-3	chr6:32441007-32650786
LST.OSCHP	2.67	Gain	4	q31.23	2183.369	140	11	IQCM, DCLK2, LRBA, LOC729558, MAB21L2, RPS3A, SNORD73B, SNORD73A, SH3D19, PRSS48, FAM160A1	6	DCLK2 (613166), LRBA (606453), MAB21L2 (604357), RPS3A (180478), SNORD73A (603568), SH3D19 (608674)	CytoRegions Not Set				false	arr[hg19] 4q31.23q31.3(150,382,005-152,565,374)x2-3	chr4:150382005-152565374
LST.OSCHP	2.67	Gain	3	p25.3	30895.285	2305	206	IRAK2, TATDN2, GHRLOS, LINC00852, GHRL, SEC13, ATP2B2, MIR378B, MIR885, ATP2B2-IT2, LINC00606, SLC6A11, SLC6A1, SLC6A1-AS1, HRH1, ATG7, VGLL4, TAMM41, SYN2, TIMP4, PPARG, TSEN2, MKRN2OS, MKRN2, RAF1, TMEM40, CAND2, RPL32, SNORA7A, LINC02022, IQSEC1, NUP210, HDAC11-AS1, HDAC11, FBLN2, SNORA93, LINC00620, WNT7A, FGD5P1, TPRXL, CHCHD4, TMEM43, XPC, LSM3, LINC01267, SLC6A6, GRIP2, CCDC174, C3orf20, LINC02011, FGD5, FGD5-AS1, NR2C2, MRPS25, RBSN, COL6A4P1, CAPN7, SH3BP5-AS1, SH3BP5, METTL6, EAF1, COLQ, MIR4270, HACL1, BTD, ANKRD28, MIR3134, MIR563, GALNT15, DPH3, OXNAD1, RFTN1, LINC00690, DAZL, PLCL2, MIR3714, TBC1D5, LOC105376975, LOC339862, SATB1, SATB1-AS1, KCNH8, MIR4791, EFHB, RAB5A, PP2D1, KAT2B, MIR3135A, SGO1, SGO1-AS1, LOC101927829, VENTXP7, ZNF385D, ZNF385D-AS1, ZNF385D-AS2, UBE2E2-AS1, UBE2E2, MIR548AC, UBE2E1-AS1, UBE2E1, NKIRAS1, RPL15, NR1D2, LINC00691, THRB, LOC101927854, THRB-AS1, RARB, LOC105376997, TOP2B, MIR4442, NGLY1, OXSM, LINC00692, LRRC3B, NEK10, SLC4A7, EOMES, LINC01980, LINC01981, CMC1, AZI2, ZCWPW2, LINC00693, RBMS3-AS3, RBMS3, RBMS3-AS1, LINC01985, TGFBR2, GADL1, MIR466, STT3B, OSBPL10, OSBPL10-AS1, ZNF860, GPD1L, CMTM8, CMTM7, CMTM6, MIR548AY, DYNC1LI1, CNOT10, TRIM71, CCR4, GLB1, TMPPE, CRTAP, SUSD5, FBXL2, UBP1, CLASP2, PDCD6IP, LOC101928135, ARPP21, MIR128-2, STAC, DCLK3, LINC02033, TRANK1, EPM2AIP1, MLH1, LRRFIP2, LOC152048, GOLGA4, C3orf35, ITGA9, ITGA9-AS1, CTDSPL, MIR26A1, VILL, PLCD1, DLEC1, ACAA1, MYD88, OXSR1, SLC22A13, SLC22A14, XYLB, ACVR2B-AS1, ACVR2B, EXOG, SCN5A, SCN10A, SCN11A, WDR48, GORASP1, TTC21A, MIR6822, CSRNP1, XIRP1, CX3CR1, CCR8, SLC25A38, RPSA, SNORA6, SNORA62, MOBP, MYRIP, EIF1B-AS1, EIF1B, ENTPD3, ENTPD3-AS1, RPL14, ZNF619, ZNF620, ZNF621	120	IRAK2 (603304), GHRL (605353), SEC13 (600152), ATP2B2 (108733), SLC6A11 (607952), SLC6A1 (137165), HRH1 (600167), ATG7 (608760), TAMM41 (614948), SYN2 (600755), TIMP4 (601915), PPARG (601487), TSEN2 (608753), MKRN2 (608426), RAF1 (164760), CAND2 (610403), IQSEC1 (610166), NUP210 (607703), HDAC11 (607226), FBLN2 (135821), WNT7A (601570), TPRXL (611167), CHCHD4 (611077), TMEM43 (612048), XPC (613208), LSM3 (607283), SLC6A6 (186854), CCDC174 (616735), FGD5 (614788), NR2C2 (601426), MRPS25 (611987), RBSN (609511), COL6A4P1 (612397), CAPN7 (606400), SH3BP5 (605612), EAF1 (608315), COLQ (603033), HACL1 (604300), BTD (609019), ANKRD28 (611122), GALNT15 (615131), DPH3 (608959), DAZL (601486), PLCL2 (614276), TBC1D5 (615740), SATB1 (602075), KCNH8 (608260), RAB5A (179512), KAT2B (602303), SGO1 (609168), UBE2E2 (602163), UBE2E1 (602916), NKIRAS1 (604496), RPL15 (604174), NR1D2 (602304), THRB (190160), RARB (180220), TOP2B (126431), NGLY1 (610661), OXSM (610324), SLC4A7 (603353), EOMES (604615), CMC1 (615166), AZI2 (609916), RBMS3 (605786), TGFBR2 (190182), GADL1 (615601), STT3B (608605), OSBPL10 (606738), GPD1L (611778), CMTM8 (607891), CMTM7 (607890), CMTM6 (607889), DYNC1LI1 (615890), CCR4 (604836), GLB1 (611458), CRTAP (605497), FBXL2 (605652), UBP1 (609784), CLASP2 (605853), PDCD6IP (608074), ARPP21 (605488), MIR128-2 (611769), STAC (602317), DCLK3 (613167), EPM2AIP1 (607911), MLH1 (120436), LRRFIP2 (614043), GOLGA4 (602509), C3orf35 (611429), ITGA9 (603963), CTDSPL (608592), MIR26A1 (612151), PLCD1 (602142), DLEC1 (604050), ACAA1 (604054), MYD88 (602170), OXSR1 (604046), SLC22A13 (604047), SLC22A14 (604048), XYLB (604049), ACVR2B (602730), EXOG (604051), SCN5A (600163), SCN10A (604427), SCN11A (604385), WDR48 (612167), GORASP1 (606867), TTC21A (611430), CSRNP1 (606458), XIRP1 (609777), CX3CR1 (601470), CCR8 (601834), SLC25A38 (610819), RPSA (150370), SNORA62 (180646), MOBP (600948), MYRIP (611790), ENTPD3 (603161), RPL14 (617414)	CytoRegions Not Set				false	arr[hg19] 3p25.3p22.1(10,261,982-41,157,267)x2-3	chr3:10261982-41157267
LST.OSCHP	2.67	Gain	7	p21.2	4112.178	290	24	ISPD, ISPD-AS1, SOSTDC1, LRRC72, ANKMY2, BZW2, TSPAN13, AGR2, AGR3, AHR, KCCAT333, LOC101927630, SNX13, PRPS1L1, HDAC9, MIR1302-6, TWIST1, FERD3L, TWISTNB, MIR3146, TMEM196, LOC101927668, MACC1, MACC1-AS1	13	ISPD (614631), SOSTDC1 (609675), TSPAN13 (613139), AGR2 (606358), AGR3 (609482), AHR (600253), SNX13 (606589), PRPS1L1 (611566), HDAC9 (606543), TWIST1 (601622), FERD3L (617578), TWISTNB (608312), MACC1 (612646)	CytoRegions Not Set				false	arr[hg19] 7p21.2p21.1(16,086,262-20,198,440)x2-3	chr7:16086262-20198440
LST.OSCHP	2.67	Gain	5	q35.1	10805.568	848	160	KCNIP1, LOC105377716, GABRP, RANBP17, TLX3, SNORA70J, MIR3912, NPM1, FGF18, SMIM23, FBXW11, STK10, EFCAB9, UBTD2, LOC100288254, SH3PXD2B, LINC01944, NEURL1B, MIR5003, LOC101928093, DUSP1, ERGIC1, LOC100268168, RPL26L1, ATP6V0E1, SNORA74B, CREBRF, BNIP1, NKX2-5, STC2, MIR8056, LOC285593, BOD1, LINC01942, LINC01484, LINC01485, CPEB4, C5orf47, NSG2, LINC01411, MSX2, MIR4634, LINC01951, DRD1, SFXN1, HRH2, CPLX2, THOC3, LOC100996385, FAM153B, LOC100507387, LOC643201, SIMC1, KIAA1191, ARL10, MIR1271, NOP16, HIGD2A, CLTB, FAF2, RNF44, CDHR2, GPRIN1, SNCB, MIR4281, EIF4E1B, TSPAN17, LINC01574, UNC5A, HK3, UIMC1, ZNF346, FGFR4, NSD1, RAB24, PRELID1, MXD3, LMAN2, RGS14, SLC34A1, PFN3, F12, GRK6, PRR7-AS1, PRR7, DBN1, PDLIM7, DOK3, DDX41, FAM193B, TMED9, B4GALT7, LOC202181, FAM153A, LOC728554, LOC100128340, PROP1, FAM153C, N4BP3, RMND5B, NHP2, GMCL2, HNRNPAB, PHYKPL, COL23A1, CLK4, ZNF354A, AACSP1, ZNF354B, ZFP2, ZNF454, GRM6, ZNF879, ZNF354C, ADAMTS2, RUFY1, LOC101928445, HNRNPH1, C5orf60, LOC105377763, CBY3, CANX, MAML1, LTC4S, MGAT4B, MIR1229, SQSTM1, MRNIP, LOC100996419, TBC1D9B, RNF130, MIR340, RASGEF1C, MAPK9, GFPT2, CNOT6, SCGB3A1, FLT4, LINC02222, OR2Y1, MGAT1, HEIH, LINC00847, ZFP62, BTNL8, BTNL3, BTNL9, MIR8089, OR2V1, OR2V2, LINC01962, TRIM7, MIR4638, TRIM41, RACK1, SNORD96A, SNORD95, CTC-338M12.4, TRIM52, TRIM52-AS1	83	KCNIP1 (604660), GABRP (602729), RANBP17 (606141), TLX3 (604640), NPM1 (164040), FGF18 (603726), FBXW11 (605651), STK10 (603919), UBTD2 (610174), SH3PXD2B (613293), NEURL1B (615893), DUSP1 (600714), ERGIC1 (617946), ATP6V0E1 (603931), SNORA74B (611331), CREBRF (617109), BNIP1 (603291), NKX2-5 (600584), STC2 (603665), BOD1 (616745), CPEB4 (610607), NSG2 (616752), MSX2 (123101), DRD1 (126449), SFXN1 (615569), HRH2 (142703), CPLX2 (605033), THOC3 (606929), NOP16 (612861), CLTB (118970), FAF2 (616935), GPRIN1 (611239), SNCB (602569), UNC5A (607869), HK3 (142570), UIMC1 (609433), ZNF346 (605308), FGFR4 (134935), NSD1 (606681), RAB24 (612415), PRELID1 (605733), MXD3 (609450), LMAN2 (609551), RGS14 (602513), SLC34A1 (182309), PFN3 (612812), F12 (610619), GRK6 (600869), DBN1 (126660), PDLIM7 (605903), DOK3 (611435), DDX41 (608170), FAM193B (615813), B4GALT7 (604327), PROP1 (601538), NHP2 (606470), HNRNPAB (602688), PHYKPL (614683), COL23A1 (610043), CLK4 (607969), ZNF354A (602444), GRM6 (604096), ADAMTS2 (604539), RUFY1 (610327), HNRNPH1 (601035), CANX (114217), MAML1 (605424), LTC4S (246530), MGAT4B (604561), SQSTM1 (601530), MRNIP (617154), MAPK9 (602896), GFPT2 (603865), CNOT6 (608951), SCGB3A1 (606500), FLT4 (136352), MGAT1 (160995), ZFP62 (610281), BTNL8 (615606), BTNL3 (606192), TRIM7 (609315), TRIM41 (610530), RACK1 (176981)	CytoRegions Not Set				false	arr[hg19] 5q35.1q35.3(169,892,744-180,698,312)x2-3	chr5:169892744-180698312
LST.OSCHP	2.67	Gain	9	p24.1	2135.774	377	4	KDM4C, DMAC1, PTPRD, PTPRD-AS1	3	KDM4C (605469), DMAC1 (617261), PTPRD (601598)	CytoRegions Not Set				false	arr[hg19] 9p24.1p23(7,065,748-9,201,522)x2-3	chr9:7065748-9201522
LST.OSCHP	2.67	Gain	4	q12	235.935	35	1	KIT	1	KIT (164920)	CytoRegions Not Set				false	arr[hg19] 4q12(55,561,196-55,797,131)x2-3	chr4:55561196-55797131
LST.OSCHP	2.67	Gain	4	q32.3	233.599	18	4	KLHL2, MSMO1, CPE, MIR578	3	KLHL2 (605774), MSMO1 (607545), CPE (114855)	CytoRegions Not Set				false	arr[hg19] 4q32.3(166,210,776-166,444,375)x2-3	chr4:166210776-166444375
LST.OSCHP	2.67	Gain	7	q36.1	164.498	28	3	KMT2C, FABP5P3, LINC01003	1	KMT2C (606833)	CytoRegions Not Set				false	arr[hg19] 7q36.1(152,027,623-152,192,121)x2-3	chr7:152027623-152192121
LST.OSCHP	2.67	Gain	1	q25.3	96.176	19	2	LAMC2, NMNAT2	2	LAMC2 (150292), NMNAT2 (608701)	CytoRegions Not Set				false	arr[hg19] 1q25.3(183,138,153-183,234,329)x2-3	chr1:183138153-183234329
LST.OSCHP	2.67	Gain	4	p13	272.362	19	1	LIMCH1	1	LIMCH1 (617750)	CytoRegions Not Set				false	arr[hg19] 4p13(41,365,259-41,637,621)x2-3	chr4:41365259-41637621
LST.OSCHP	2.67	Gain	4	q34.3	2537.72	170	3	LINC00290, LINC02500, TEMN3-AS1	0		CytoRegions Not Set				false	arr[hg19] 4q34.3(180,278,302-182,816,022)x2-3	chr4:180278302-182816022
LST.OSCHP	2.67	Gain	3	p12.2	42727.429	2785	247	LINC02008, LINC00971, LINC02025, CADM2, SNORA95, MIR5688, CADM2-AS2, LINC02070, VGLL3, LINC00506, MIR4795, CHMP2B, POU1F1, HTR1F, CGGBP1, ZNF654, C3orf38, EPHA3, PROS1, ARL13B, STX19, DHFR2, NSUN3, MIR6730, LINC00879, MTHFD2P1, MIR8060, EPHA6, ARL6, CRYBG3, RIOX2, GABRR3, OR5AC2, OR5H1, OR5H14, OR5H15, OR5H6, OR5H2, OR5K4, OR5K3, OR5K1, OR5K2, CLDND1, GPR15, CPOX, ST3GAL6-AS1, ST3GAL6, DCBLD2, MIR548G, COL8A1, HP09053, CMSS1, FILIP1L, MIR3921, TMEM30CP, TBC1D23, NIT2, TOMM70, LNP1, TMEM45A, ADGRG7, TFG, ABI3BP, IMPG2, SENP7, FAM172BP, TRMT10C, PCNP, ZBTB11, ZBTB11-AS1, RPL24, PDCL3P4, CEP97, NXPE3, NFKBIZ, LINC02085, LOC101929411, ZPLD1, MIR548AB, MIR548A3, ALCAM, CBLB, LINC00882, DUBR, CCDC54, LOC101929579, LINC01990, BBX, LINC00635, LINC00636, CD47, LINC01215, IFT57, HHLA2, MYH15, CIP2A, DZIP3, RETNLB, TRAT1, GUCA1C, MORC1, MORC1-AS1, C3orf85, LINC00488, DPPA2, DPPA4, LINC01205, MIR4445, NECTIN3-AS1, NECTIN3, CD96, ZBED2, PLCXD2, PLCXD2-AS1, PHLDB2, ABHD10, TAGLN3, TMPRSS7, C3orf52, MIR567, GCSAM, SLC9C1, LOC105374042, CD200, BTLA, ATG3, SLC35A5, LINC01279, CCDC80, LINC02042, LOC100129297, CD200R1L, CD200R1, GTPBP8, NEPRO, LINC02044, BOC, CFAP44, CFAP44-AS1, MIR8076, SPICE1, SIDT1, MIR4446, USF3, NAA50, ATP6V1A, GRAMD1C, ZDHHC23, CCDC191, QTRT2, DRD3, ZNF80, TIGIT, ZBTB20, MIR568, ZBTB20-AS1, ZBTB20-AS5, MIR4796, ZBTB20-AS3, ZBTB20-AS4, GAP43, LSAMP, SNORD155, LSAMP-AS1, LINC00903, TUSC7, MIR4447, LINC00901, LINC02024, LOC105374060, LOC101926968, IGSF11, IGSF11-AS1, C3orf30, UPK1B, B4GALT4, B4GALT4-AS1, ARHGAP31, ARHGAP31-AS1, TMEM39A, POGLUT1, TIMMDC1, CD80, ADPRH, PLA1A, POPDC2, COX17, MAATS1, NR1I2, GSK3B, GPR156, LRRC58, FSTL1, MIR198, NDUFB4, HGD, RABL3, GTF2E1, LINC02049, STXBP5L, MIR5682, POLQ, ARGFX, FBXO40, HCLS1, GOLGB1, IQCB1, EAF2, SLC15A2, ILDR1, CD86, CASR, CSTA, CCDC58, FAM162A, WDR5B, LOC102723582, KPNA1, PARP9, DTX3L, PARP15, PARP14, HSPBAP1, DIRC2, LINC02035, SEMA5B, PDIA5, MIR7110, SEC22A, ADCY5, HACD2, MYLK-AS1, MYLK, MYLK-AS2, CCDC14, ROPN1, KALRN, MIR5002, MIR6083, UMPS, MIR544B, ITGB5, MUC13, HEG1, SLC12A8, MIR5092, ZNF148	136	CADM2 (609938), VGLL3 (609980), CHMP2B (609512), POU1F1 (173110), HTR1F (182134), CGGBP1 (603363), EPHA3 (179611), PROS1 (176880), ARL13B (608922), DHFR2 (616588), NSUN3 (617491), EPHA6 (600066), ARL6 (608845), RIOX2 (612049), GPR15 (601166), CPOX (612732), ST3GAL6 (607156), DCBLD2 (608698), COL8A1 (120251), FILIP1L (612993), TMEM30CP (611030), TBC1D23 (617687), NIT2 (616769), TOMM70 (606081), TMEM45A (616928), ADGRG7 (612307), TFG (602498), ABI3BP (606279), IMPG2 (607056), SENP7 (612846), TRMT10C (615423), PCNP (615210), RPL24 (604180), CEP97 (615864), NFKBIZ (608004), ZPLD1 (615915), ALCAM (601662), CBLB (604491), DUBR (616619), CD47 (601028), IFT57 (606621), HHLA2 (604371), MYH15 (609929), CIP2A (610643), DZIP3 (608672), RETNLB (605645), TRAT1 (604962), GUCA1C (605128), MORC1 (603205), DPPA2 (614445), DPPA4 (614125), NECTIN3 (607147), CD96 (606037), ZBED2 (615246), PLCXD2 (617015), PHLDB2 (610298), TAGLN3 (607953), C3orf52 (611956), GCSAM (607792), SLC9C1 (612738), CD200 (155970), BTLA (607925), ATG3 (609606), CCDC80 (608298), CD200R1 (607546), NEPRO (617089), BOC (608708), CFAP44 (617559), SPICE1 (613447), SIDT1 (606816), USF3 (617568), NAA50 (610834), ATP6V1A (607027), ZDHHC23 (617334), DRD3 (126451), ZNF80 (194553), TIGIT (612859), ZBTB20 (606025), GAP43 (162060), LSAMP (603241), TUSC7 (616057), IGSF11 (608351), UPK1B (602380), B4GALT4 (604015), ARHGAP31 (610911), POGLUT1 (615618), TIMMDC1 (615534), CD80 (112203), ADPRH (603081), PLA1A (607460), POPDC2 (605823), COX17 (604813), MAATS1 (609910), NR1I2 (603065), GSK3B (605004), GPR156 (610464), FSTL1 (605547), NDUFB4 (603840), HGD (607474), GTF2E1 (189962), STXBP5L (609381), POLQ (604419), ARGFX (611164), FBXO40 (609107), HCLS1 (601306), GOLGB1 (602500), IQCB1 (609237), EAF2 (607659), SLC15A2 (602339), ILDR1 (609739), CD86 (601020), CASR (601199), CSTA (184600), FAM162A (608017), KPNA1 (600686), PARP9 (612065), DTX3L (613143), PARP15 (612066), PARP14 (610028), HSPBAP1 (608263), DIRC2 (602773), SEMA5B (609298), PDIA5 (616942), SEC22A (612442), ADCY5 (600293), HACD2 (615939), MYLK (600922), CCDC14 (617147), ROPN1 (611757), KALRN (604605), UMPS (613891), ITGB5 (147561), MUC13 (612181), HEG1 (614182), SLC12A8 (611316), ZNF148 (601897)	CytoRegions Not Set				false	arr[hg19] 3p12.2q21.2(82,330,232-125,057,661)x2-3	chr3:82330232-125057661
LST.OSCHP	2.67	Gain	3	p12.2	1734.933	117	3	LINC02050, LINC02027, GBE1	1	GBE1 (607839)	CytoRegions Not Set				false	arr[hg19] 3p12.2(80,227,905-81,962,838)x2-3	chr3:80227905-81962838
LST.OSCHP	2.67	Gain	5	q14.3	305.452	22	1	LINC02059	0		CytoRegions Not Set				false	arr[hg19] 5q14.3(86,003,547-86,308,999)x2-3	chr5:86003547-86308999
LST.OSCHP	2.67	Gain	4	q13.1	6625.03	540	9	LINC02429, LOC105377245, MIR548AG1, LINC02271, ADGRL3, ADGRL3-AS1, TECRL, LINC02232, EPHA5	3	ADGRL3 (616417), TECRL (617242), EPHA5 (600004)	CytoRegions Not Set				false	arr[hg19] 4q13.1(59,715,416-66,340,446)x2-3	chr4:59715416-66340446
LST.OSCHP	2.67	Gain	11	q13.4	147.213	19	5	LOC100133315, RNF121, IL18BP, NUMA1, LOC100128494	2	IL18BP (604113), NUMA1 (164009)	CytoRegions Not Set				false	arr[hg19] 11q13.4(71,620,698-71,767,911)x2-3	chr11:71620698-71767911
LST.OSCHP	2.67	Gain	7	p14.2	296.795	20	3	LOC100506725, SEPT7-AS1, SEPT7	1	SEPT7 (603151)	CytoRegions Not Set				false	arr[hg19] 7p14.2(35,747,284-36,044,079)x2-3	chr7:35747284-36044079
LST.OSCHP	2.67	Gain	7	q21.11	7038.05	498	20	LOC101927269, GNAT3, CD36, SEMA3C, LOC105369146, LOC100128317, HGF, CACNA2D1, LOC101927356, PCLO, SEMA3E, SEMA3A, LOC101927378, SEMA3D, LINC00972, GRM3, KIAA1324L, LOC101927420, DMTF1, TMEM243	13	GNAT3 (139395), CD36 (173510), SEMA3C (602645), HGF (142409), CACNA2D1 (114204), PCLO (604918), SEMA3E (608166), SEMA3A (603961), SEMA3D (609907), GRM3 (601115), KIAA1324L (614048), DMTF1 (608491), TMEM243 (616993)	CytoRegions Not Set				false	arr[hg19] 7q21.11q21.12(79,865,574-86,903,624)x2-3	chr7:79865574-86903624
LST.OSCHP	2.67	Gain	4	q35.2	1722.662	112	7	LOC339975, LINC02492, ZFP42, TRIML2, TRIML1, LINC01060, LINC02508	1	ZFP42 (614572)	CytoRegions Not Set				false	arr[hg19] 4q35.2(188,322,599-190,045,261)x2-3	chr4:188322599-190045261
LST.OSCHP	2.67	Gain	5	q14.3	376.534	26	1	MEF2C-AS1	0		CytoRegions Not Set				false	arr[hg19] 5q14.3(88,298,155-88,674,689)x2-3	chr5:88298155-88674689
LST.OSCHP	2.67	Gain	3	q26.33	18758.767	1559	231	MFN1, GNB4, ACTL6A, MRPL47, NDUFB5, USP13, PEX5L, PEX5L-AS2, LINC02053, TTC14, CCDC39, LOC101928882, FXR1, DNAJC19, SOX2-OT, RNU6-2, LOC102724604, SOX2, LINC01206, LINC01994, LINC01995, ATP11B, DCUN1D1, MCCC1, LAMP3, MCF2L2, B3GNT5, LINC00888, SNORA63D, SNORA63E, KLHL6, KLHL6-AS1, KLHL24, YEATS2, YEATS2-AS1, MAP6D1, PARL, ABCC5, ABCC5-AS1, HTR3D, HTR3C, HTR3E-AS1, HTR3E, EIF2B5, DVL3, AP2M1, ABCF3, VWA5B2, MIR1224, ALG3, EEF1AKMT4, EEF1AKMT4-ECE2, CAMK2N2, ECE2, PSMD2, EIF4G1, SNORD66, FAM131A, CLCN2, POLR2H, THPO, CHRD, LINC02054, LINC01840, EPHB3, MAGEF1, LINC02069, VPS8, C3orf70, EHHADH-AS1, EHHADH, MIR5588, MAP3K13, TMEM41A, LIPH, SENP2, IGF2BP2, IGF2BP2-AS1, MIR548AQ, TRA2B, NMRAL2P, ETV5, DGKG, LINC02020, LINC02052, CRYGS, TBCCD1, DNAJB11, AHSG, FETUB, HRG, KNG1, EIF4A2, SNORD2, SNORA63B, MIR1248, SNORA81, SNORA63, SNORA4, RFC4, LINC02043, ADIPOQ, ADIPOQ-AS1, ST6GAL1, RPL39L, LOC101929106, RTP1, MASP1, LOC101929130, RTP4, LINC02041, SST, RTP2, LOC100131635, BCL6, LINC01991, LPP-AS2, LPP, FLJ42393, LPP-AS1, MIR28, TPRG1-AS1, TPRG1, TPRG1-AS2, TP63, MIR944, P3H2, P3H2-AS1, CLDN1, CLDN16, TMEM207, IL1RAP, GMNC, SNAR-I, OSTN, OSTN-AS1, UTS2B, CCDC50, LINCR-0002, PYDC2, FGF12, FGF12-AS1, FGF12-AS2, MB21D2, HRASLS, MGC2889, ATP13A5, ATP13A5-AS1, ATP13A4, ATP13A4-AS1, OPA1, OPA1-AS1, LINC02038, LINC02026, DPPA2P3, LINC02028, HES1, LINC02036, LINC02037, LINC00887, CPN2, LRRC15, GP5, ATP13A3, LINC00884, TMEM44-AS1, TMEM44, LSG1, FAM43A, LINC01968, LINC01972, XXYLT1, XXYLT1-AS1, MIR3137, XXYLT1-AS2, ACAP2, PPP1R2, APOD, LOC105374297, SDHAP2, MIR570HG, MIR570, MUC20, MUC4, LINC01983, TNK2, MIR6829, TNK2-AS1, SDHAP1, TFRC, LINC00885, ZDHHC19, SLC51A, PCYT1A, TCTEX1D2, TM4SF19-TCTEX1D2, TM4SF19-AS1, TM4SF19, UBXN7, UBXN7-AS1, RNF168, SMCO1, WDR53, FBXO45, LINC01063, NRROS, CEP19, PIGX, PAK2, SENP5, NCBP2, NCBP2-AS1, NCBP2-AS2, PIGZ, MELTF, MELTF-AS1, DLG1, MIR4797, DLG1-AS1, LINC02012, BDH1, LOC220729, RUBCN, MIR922, FYTTD1, LRCH3, IQCG, RPL35A, LMLN, LMLN-AS1, ANKRD18DP	120	MFN1 (608506), GNB4 (610863), ACTL6A (604958), MRPL47 (611852), NDUFB5 (603841), USP13 (603591), PEX5L (611058), CCDC39 (613798), FXR1 (600819), DNAJC19 (608977), SOX2-OT (616338), SOX2 (184429), ATP11B (605869), DCUN1D1 (605905), MCCC1 (609010), LAMP3 (605883), B3GNT5 (615333), KLHL6 (614214), KLHL24 (611295), YEATS2 (613373), MAP6D1 (610593), PARL (607858), ABCC5 (605251), HTR3D (610122), HTR3C (610121), HTR3E (610123), EIF2B5 (603945), DVL3 (601368), AP2M1 (601024), MIR1224 (611620), ALG3 (608750), CAMK2N2 (608721), ECE2 (610145), PSMD2 (606223), EIF4G1 (600495), CLCN2 (600570), POLR2H (606023), THPO (600044), CHRD (603475), EPHB3 (601839), MAGEF1 (609267), EHHADH (607037), MAP3K13 (604915), LIPH (607365), SENP2 (608261), IGF2BP2 (608289), TRA2B (602719), ETV5 (601600), DGKG (601854), CRYGS (123730), DNAJB11 (611341), AHSG (138680), FETUB (605954), HRG (142640), KNG1 (612358), EIF4A2 (601102), SNORA81 (611334), SNORA63 (180647), RFC4 (102577), ADIPOQ (605441), ST6GAL1 (109675), RPL39L (607547), RTP1 (609137), MASP1 (600521), RTP4 (609350), SST (182450), RTP2 (609138), BCL6 (109565), LPP (600700), MIR28 (612154), TP63 (603273), P3H2 (610341), CLDN1 (603718), CLDN16 (603959), TMEM207 (614786), IL1RAP (602626), GMNC (614448), OSTN (610280), CCDC50 (611051), PYDC2 (615701), FGF12 (601513), HRASLS (606487), ATP13A4 (609556), OPA1 (605290), HES1 (139605), CPN2 (603104), GP5 (173511), ATP13A3 (610232), LSG1 (610780), XXYLT1 (614552), ACAP2 (607766), PPP1R2 (601792), APOD (107740), MIR570 (614538), MUC20 (610360), MUC4 (158372), TNK2 (606994), TFRC (190010), SLC51A (612084), PCYT1A (123695), TCTEX1D2 (617353), UBXN7 (616379), RNF168 (612688), WDR53 (615110), FBXO45 (609112), NRROS (615322), CEP19 (615586), PIGX (610276), PAK2 (605022), SENP5 (612845), NCBP2 (605133), PIGZ (611671), MELTF (155750), DLG1 (601014), BDH1 (603063), RUBCN (613516), FYTTD1 (616933), IQCG (612477), RPL35A (180468), LMLN (609380)	CytoRegions Not Set				false	arr[hg19] 3q26.33q29(179,093,797-197,852,564)x2-3	chr3:179093797-197852564
LST.OSCHP	2.67	Gain	22	q12.2	1023.574	81	20	MIR3928, RNF185, LIMK2, PIK3IP1, PATZ1, PIK3IP1-AS1, LINC01521, DRG1, EIF4ENIF1, SFI1, PISD, MIR7109, PRR14L, DEPDC5, C22orf24, YWHAH, LINC02558, SLC5A1, AP1B1P1, C22orf42	9	LIMK2 (601988), PATZ1 (605165), DRG1 (603952), EIF4ENIF1 (607445), SFI1 (612765), PISD (612770), DEPDC5 (614191), YWHAH (113508), SLC5A1 (182380)	CytoRegions Not Set				false	arr[hg19] 22q12.2q12.3(31,556,102-32,579,676)x2-3	chr22:31556102-32579676
LST.OSCHP	2.67	Gain	18	q22.1	1714.744	114	4	MIR5011, DSEL, LOC643542, LINC01903	1	DSEL (611125)	CytoRegions Not Set				false	arr[hg19] 18q22.1(64,504,032-66,218,776)x2-3	chr18:64504032-66218776
LST.OSCHP	2.67	Gain	X	p22.31	1180.518	79	6	MIR651, VCX2, VCX3B, ANOS1, FAM9A, FAM9B	5	VCX2 (300532), VCX3B (300981), ANOS1 (300836), FAM9A (300477), FAM9B (300478)	CytoRegions Not Set				false	arr[hg19] Xp22.31(8,055,497-9,236,015)x2-3	chrX:8055497-9236015
LST.OSCHP	2.67	Gain	6	p21.33	341.542	45	13	MUC22, HCG22, C6orf15, PSORS1C1, CDSN, PSORS1C2, CCHCR1, TCF19, POU5F1, PSORS1C3, HCG27, HLA-C, LINC02571	10	MUC22 (613917), HCG22 (613918), C6orf15 (611401), PSORS1C1 (613525), CDSN (602593), PSORS1C2 (613526), CCHCR1 (605310), TCF19 (600912), POU5F1 (164177), HLA-C (142840)	CytoRegions Not Set				false	arr[hg19] 6p21.33(30,957,883-31,299,425)x2-3	chr6:30957883-31299425
LST.OSCHP	2.67	Gain	3	q26.31	3862.99	297	16	NAALADL2, MIR4789, NAALADL2-AS1, MIR7977, LINC01208, LINC01209, TBL1XR1, LINC00501, LINC00578, LINC02015, LINC01014, KCNMB2-AS1, KCNMB2, ZMAT3, LOC101928739, PIK3CA	5	NAALADL2 (608806), TBL1XR1 (608628), KCNMB2 (605214), ZMAT3 (606452), PIK3CA (171834)	CytoRegions Not Set				false	arr[hg19] 3q26.31q26.32(175,068,217-178,931,207)x2-3	chr3:175068217-178931207
LST.OSCHP	2.67	Gain	1	q21.2	614.034	39	10	NBPF19, ACP6, GJA5, GJA8, GPR89B, PDZK1P1, PDE4DIPP1, NBPF11, LOC100505824, LOC101927468	5	ACP6 (611471), GJA5 (121013), GJA8 (600897), GPR89B (612806), NBPF11 (614001)	CytoRegions Not Set				false	arr[hg19] 1q21.2(147,136,283-147,750,317)x2-3	chr1:147136283-147750317
LST.OSCHP	2.67	Gain	11	p15.4	257.984	19	6	NLRP10, EIF3F, CASC23, TUB, TUB-AS1, RIC3	4	NLRP10 (609662), EIF3F (603914), TUB (601197), RIC3 (610509)	CytoRegions Not Set				false	arr[hg19] 11p15.4(7,964,302-8,222,286)x2-3	chr11:7964302-8222286
LST.OSCHP	2.67	Gain	9	q34.3	1625.736	170	86	NOTCH1, MIR4674, NALT1, LINC01451, HSPC324, EGFL7, MIR126, AGPAT2, FAM69B, SNHG7, SNORA17B, SNORA17A, LCN10, LCN6, LOC100128593, MIR6722, LCN8, LCN15, TMEM141, CCDC183, CCDC183-AS1, RABL6, MIR4292, AJM1, PHPT1, MAMDC4, EDF1, TRAF2, MIR4479, FBXW5, C8G, LCN12, PRR31, PTGDS, LCNL1, PAXX, CLIC3, ABCA2, C9orf139, FUT7, NPDC1, ENTPD2, SAPCD2, UAP1L1, MAN1B1-DT, MAN1B1, DPP7, GRIN1, LRRC26, MIR3621, TMEM210, ANAPC2, SSNA1, TPRN, TMEM203, NDOR1, RNF208, CYSRT1, RNF224, SLC34A3, TUBB4B, FAM166A, STPG3-AS1, STPG3, NELFB, TOR4A, NRARP, EXD3, NOXA1, ENTPD8, NSMF, MIR7114, PNPLA7, MRPL41, DPH7, ZMYND19, ARRDC1, ARRDC1-AS1, EHMT1, LOC651337, MIR602, LOC100133077, CACNA1B, LOC105376331, LOC101928786, TUBBP5	46	NOTCH1 (190198), EGFL7 (608582), MIR126 (611767), AGPAT2 (603100), FAM69B (614543), LCN10 (612904), LCN6 (609379), LCN8 (612902), CCDC183 (615955), RABL6 (610615), PHPT1 (610167), MAMDC4 (617208), EDF1 (605107), TRAF2 (601895), FBXW5 (609072), C8G (120930), LCN12 (612905), PTGDS (176803), PAXX (616315), CLIC3 (606533), ABCA2 (600047), FUT7 (602030), NPDC1 (605798), ENTPD2 (602012), SAPCD2 (612057), MAN1B1 (604346), DPP7 (610537), GRIN1 (138249), LRRC26 (613505), ANAPC2 (606946), SSNA1 (610882), TPRN (613354), TMEM203 (616499), NDOR1 (606073), SLC34A3 (609826), TUBB4B (602660), NELFB (611180), NOXA1 (611255), ENTPD8 (616748), NSMF (608137), PNPLA7 (612122), MRPL41 (611846), DPH7 (613210), ZMYND19 (611424), EHMT1 (607001), CACNA1B (601012)	CytoRegions Not Set				false	arr[hg19] 9q34.3(139,429,025-141,054,761)x2-3	chr9:139429025-141054761
LST.OSCHP	2.67	Gain	6	p22.3	4973.172	330	130	NRSN1, DCDC2, KAAG1, MRS2, GPLD1, ALDH5A1, KIAA0319, TDP2, ACOT13, C6orf62, GMNN, ARMH2, RIPOR2, CMAHP, LOC101928663, CARMIL1, SCGN, HIST1H2AA, HIST1H2BA, HIST1H2APS1, SLC17A4, SLC17A1, SLC17A3, SLC17A2, TRIM38, HIST1H1A, HIST1H3A, HIST1H4A, HIST1H4B, HIST1H3B, HIST1H2AB, HIST1H2BB, HIST1H3C, HIST1H1C, LOC108783645, HFE, HIST1H4C, HIST1H1T, HIST1H2BC, HIST1H2AC, HIST1H1E, HIST1H2BD, HIST1H2BE, HIST1H4D, HIST1H3D, HIST1H2AD, HIST1H2BF, HIST1H4E, HIST1H2BG, HIST1H2AE, HIST1H3E, HIST1H1D, HIST1H4F, HIST1H4G, HIST1H3F, HIST1H2BH, HIST1H3G, HIST1H2BI, HIST1H4H, BTN3A2, BTN2A2, BTN3A1, BTN2A3P, BTN3A3, BTN2A1, LOC285819, BTN1A1, HCG11, HMGN4, LOC105374988, ABT1, ZNF322, GUSBP2, LINC00240, LOC100270746, HIST1H2BJ, HIST1H2AG, HIST1H2BK, HIST1H4I, HIST1H2AH, MIR3143, PRSS16, POM121L2, VN1R10P, ZNF204P, ZNF391, ZNF184, LINC01012, LOC100131289, HIST1H2BL, HIST1H2AI, HIST1H3H, HIST1H2AJ, HIST1H2BM, HIST1H4J, HIST1H4K, HIST1H2AK, HIST1H2BN, HIST1H2AL, HIST1H1B, HIST1H3I, HIST1H4L, HIST1H3J, HIST1H2AM, HIST1H2BO, OR2B2, OR2B6, OR1F12, ZNF165, ZSCAN12P1, ZSCAN16-AS1, ZSCAN16, ZKSCAN8, ZNF192P1, TOB2P1, ZSCAN9, ZKSCAN4, NKAPL, ZSCAN26, PGBD1, ZSCAN31, ZKSCAN3, ZSCAN12, ZSCAN23, GPX6, GPX5, ZBED9, LINC00533, LINC01623, HCG14	93	NRSN1 (616630), DCDC2 (605755), KAAG1 (608211), GPLD1 (602515), ALDH5A1 (610045), KIAA0319 (609269), TDP2 (605764), ACOT13 (615652), GMNN (602842), RIPOR2 (611410), CARMIL1 (609593), SCGN (609202), HIST1H2AA (613499), HIST1H2BA (609904), SLC17A4 (604216), SLC17A1 (182308), SLC17A3 (611034), SLC17A2 (611049), HIST1H1A (142709), HIST1H3A (602810), HIST1H4A (602822), HIST1H4B (602829), HIST1H3B (602819), HIST1H2AB (602795), HIST1H2BB (602803), HIST1H3C (602812), HIST1H1C (142710), HFE (613609), HIST1H4C (602827), HIST1H1T (142712), HIST1H2BC (602847), HIST1H2AC (602794), HIST1H1E (142220), HIST1H2BD (602799), HIST1H2BE (602805), HIST1H4D (602823), HIST1H3D (602811), HIST1H2AD (602792), HIST1H2BF (602804), HIST1H4E (602830), HIST1H2BG (602798), HIST1H2AE (602786), HIST1H3E (602813), HIST1H1D (142210), HIST1H4F (602824), HIST1H4G (602832), HIST1H3F (602816), HIST1H2BH (602806), HIST1H3G (602815), HIST1H2BI (602807), HIST1H4H (602828), BTN3A2 (613594), BTN2A2 (613591), BTN3A1 (613593), BTN2A3P (613592), BTN3A3 (613595), BTN2A1 (613590), BTN1A1 (601610), ZNF322 (610847), HIST1H2BJ (615044), HIST1H2AG (615012), HIST1H2BK (615045), HIST1H4I (602833), HIST1H2AH (615013), PRSS16 (607169), ZNF184 (602277), HIST1H2BL (602800), HIST1H2AI (602787), HIST1H3H (602818), HIST1H2AJ (602791), HIST1H2BM (602802), HIST1H4J (602826), HIST1H4K (602825), HIST1H2AK (602788), HIST1H2BN (602801), HIST1H2AL (602793), HIST1H1B (142711), HIST1H3I (602814), HIST1H4L (602831), HIST1H3J (602817), HIST1H2AM (602796), HIST1H2BO (602808), ZNF165 (600834), ZKSCAN8 (602240), ZSCAN9 (602246), ZKSCAN4 (611643), ZSCAN26 (616474), ZSCAN31 (610794), ZKSCAN3 (612791), ZSCAN12 (603978), GPX6 (607913), GPX5 (603435), ZBED9 (615254)	CytoRegions Not Set				false	arr[hg19] 6p22.3p22.1(23,891,873-28,865,045)x2-3	chr6:23891873-28865045
LST.OSCHP	2.67	Gain	20	p12.2	626.629	93	5	PAK5, PARAL1, SNAP25-AS1, ANKEF1, SNAP25	2	PAK5 (608038), SNAP25 (600322)	CytoRegions Not Set				false	arr[hg19] 20p12.2(9,677,745-10,304,374)x2-3	chr20:9677745-10304374
LST.OSCHP	2.67	Gain	4	p15.1	2698.326	179	6	PCDH7, LINC02497, LINC02501, LINC02506, LOC105377651, LINC02353	1	PCDH7 (602988)	CytoRegions Not Set				false	arr[hg19] 4p15.1(30,954,026-33,652,352)x2-3	chr4:30954026-33652352
LST.OSCHP	2.67	Gain	5	q11.2	1443.597	92	5	PDE4D, PART1, DEPDC1B, ELOVL7, ERCC8	5	PDE4D (600129), PART1 (604991), DEPDC1B (616073), ELOVL7 (614451), ERCC8 (609412)	CytoRegions Not Set				false	arr[hg19] 5q11.2q12.1(58,776,203-60,219,800)x2-3	chr5:58776203-60219800
LST.OSCHP	2.67	Gain	4	q12	168.467	42	2	PDGFRA, LINC02283	1	PDGFRA (173490)	CytoRegions Not Set				false	arr[hg19] 4q12(55,090,885-55,259,352)x2-3	chr4:55090885-55259352
LST.OSCHP	2.67	Gain	7	p12.1	3000.494	362	9	POM121L12, LINC01446, HPVC1, LINC01445, VSTM2A, VSTM2A-OT1, SEC61G, LOC100996654, EGFR	3	HPVC1 (600762), SEC61G (609215), EGFR (131550)	CytoRegions Not Set				false	arr[hg19] 7p12.1p11.2(52,209,694-55,210,188)x2-3	chr7:52209694-55210188
LST.OSCHP	2.67	Gain	6	p21.33	149.513	18	12	PRR3, ABCF1, MIR877, PPP1R10, MRPS18B, ATAT1, C6orf136, DHX16, PPP1R18, NRM, MDC1, MDC1-AS1	8	ABCF1 (603429), MIR877 (611619), PPP1R10 (603771), MRPS18B (611982), ATAT1 (615556), DHX16 (603405), PPP1R18 (610990), MDC1 (607593)	CytoRegions Not Set				false	arr[hg19] 6p21.33(30,531,802-30,681,315)x2-3	chr6:30531802-30681315
LST.OSCHP	2.67	Gain	18	p11.21	5695.698	153	23	PTPN2, SEH1L, CEP192, LDLRAD4, C18orf15, LDLRAD4-AS1, MIR5190, MIR4526, FAM210A, RNMT, MC5R, MC2R, ZNF519, ANKRD20A5P, CYP4F35P, CXADRP3, POTEC, ANKRD30B, MIR3156-2, LINC01443, LINC01444, LOC644669, ROCK1	10	PTPN2 (176887), SEH1L (609263), CEP192 (616426), LDLRAD4 (606571), FAM210A (617975), RNMT (603514), MC5R (600042), MC2R (607397), ANKRD30B (616565), ROCK1 (601702)	CytoRegions Not Set				false	arr[hg19] 18p11.21q11.1(12,858,609-18,554,307)x2-3	chr18:12858609-18554307
LST.OSCHP	2.67	Gain	7	p22.1	43.05	20	2	RAC1, DAGLB	2	RAC1 (602048), DAGLB (614016)	CytoRegions Not Set				false	arr[hg19] 7p22.1(6,432,749-6,475,799)x2-3	chr7:6432749-6475799
LST.OSCHP	2.67	Gain	22	q13.1	270.925	19	5	RAC2, CYTH4, ELFN2, LOC100506271, MFNG	3	RAC2 (602049), CYTH4 (606514), MFNG (602577)	CytoRegions Not Set				false	arr[hg19] 22q13.1(37,611,806-37,882,731)x2-3	chr22:37611806-37882731
LST.OSCHP	2.67	Gain	1	q43	224.383	24	2	RGS7, MIR3123	1	RGS7 (602517)	CytoRegions Not Set				false	arr[hg19] 1q43(241,231,502-241,455,885)x2-3	chr1:241231502-241455885
LST.OSCHP	2.67	Gain	6	q14.1	232.334	20	2	SENP6, MYO6	2	SENP6 (605003), MYO6 (600970)	CytoRegions Not Set				false	arr[hg19] 6q14.1(76,375,320-76,607,654)x2-3	chr6:76375320-76607654
LST.OSCHP	2.67	Gain	5	q33.3	3861.962	270	33	SGCD, PPP1R2B, TIMD4, HAVCR1, HAVCR2, MED7, FAM71B, ITK, CYFIP2, FNDC9, LOC102724404, NIPAL4, ADAM19, SOX30, C5orf52, THG1L, LSM11, CLINT1, LINC02227, EBF1, LINC02202, RNF145, LINC01932, UBLCP1, IL12B, LOC285626, LINC01845, LINC01847, ADRA1B, TTC1, PWWP2A, FABP6, CCNJL	19	SGCD (601411), TIMD4 (610096), HAVCR1 (606518), HAVCR2 (606652), MED7 (605045), ITK (186973), CYFIP2 (606323), NIPAL4 (609383), ADAM19 (603640), SOX30 (606698), LSM11 (617910), CLINT1 (607265), EBF1 (164343), UBLCP1 (609867), IL12B (161561), ADRA1B (104220), TTC1 (601963), PWWP2A (617823), FABP6 (600422)	CytoRegions Not Set				false	arr[hg19] 5q33.3(155,863,702-159,725,664)x2-3	chr5:155863702-159725664
LST.OSCHP	2.67	Gain	4	q35.1	275.808	19	6	SLC25A4, CFAP97, SNX25, LRP2BP, ANKRD37, UFSP2	3	SLC25A4 (103220), CFAP97 (616047), UFSP2 (611482)	CytoRegions Not Set				false	arr[hg19] 4q35.1(186,070,431-186,346,239)x2-3	chr4:186070431-186346239
LST.OSCHP	2.67	Gain	4	q35.1	269.496	19	2	SORBS2, TLR3	2	SORBS2 (616349), TLR3 (603029)	CytoRegions Not Set				false	arr[hg19] 4q35.1(186,769,050-187,038,546)x2-3	chr4:186769050-187038546
LST.OSCHP	2.67	Gain	7	q22.1	14336.45	1009	97	SPDYE6, LOC100289561, LOC100630923, PRKRIP1, MIR548O, ORAI2, ALKBH4, LRWD1, MIR5090, MIR4467, POLR2J, RASA4B, UPK3BL2, POLR2J3, SPDYE2, SPDYE2B, RASA4, POLR2J2, UPK3BL1, RASA4DP, FAM185A, FBXL13, LRRC17, ARMC10, NAPEPLD, RPL19P12, DPY19L2P2, PMPCB, DNAJC2, PSMC2, SLC26A5, LOC101927870, RELN, ORC5, LHFPL3, LHFPL3-AS1, LHFPL3-AS2, LINC01004, KMT2E-AS1, KMT2E, SRPK2, PUS7, RINT1, EFCAB10, ATXN7L1, CDHR3, SYPL1, NAMPT, CCDC71L, PIK3CG, PRKAR2B, HBP1, COG5, GPR22, DUS4L, BCAP29, SLC26A4-AS1, SLC26A4, LOC101927974, CBLL1, SLC26A3, DLD, LAMB1, LAMB4, NRCAM, PNPLA8, THAP5, DNAJB9, C7orf66, EIF3IP1, IMMP2L, LRRN3, DOCK4, DOCK4-AS1, ZNF277, IFRD1, LSMEM1, LOC100996249, LOC101928012, TMEM168, BMT2, HRAT17, GPR85, SMIM30, PPP1R3A, FOXP2, MIR3666, MDFIC, LINC01393, LINC01392, SNORA25B, TFEC, TES, LOC102724434, CAV2, CAV1, LINC01510	53	PRKRIP1 (617458), ORAI2 (610929), ALKBH4 (613302), LRWD1 (615167), POLR2J (604150), SPDYE2 (617624), RASA4 (607943), POLR2J2 (609881), FBXL13 (609080), ARMC10 (611864), NAPEPLD (612334), PMPCB (603131), DNAJC2 (605502), PSMC2 (154365), SLC26A5 (604943), RELN (600514), ORC5 (602331), LHFPL3 (609719), KMT2E (608444), SRPK2 (602980), PUS7 (616261), RINT1 (610089), CDHR3 (615610), SYPL1 (616665), NAMPT (608764), PIK3CG (601232), PRKAR2B (176912), HBP1 (616714), COG5 (606821), GPR22 (601910), SLC26A4 (605646), CBLL1 (606872), SLC26A3 (126650), DLD (238331), LAMB1 (150240), LAMB4 (616380), NRCAM (601581), PNPLA8 (612123), THAP5 (612534), DNAJB9 (602634), IMMP2L (605977), DOCK4 (607679), ZNF277 (605465), IFRD1 (603502), BMT2 (617855), GPR85 (605188), PPP1R3A (600917), FOXP2 (605317), MDFIC (614511), TFEC (604732), TES (606085), CAV2 (601048), CAV1 (601047)	CytoRegions Not Set				false	arr[hg19] 7q22.1q31.2(101,966,860-116,303,310)x2-3	chr7:101966860-116303310
LST.OSCHP	2.67	Gain	18	q21.31	264.943	19	3	ST8SIA3, ONECUT2, FECH	3	ST8SIA3 (609478), ONECUT2 (604894), FECH (612386)	CytoRegions Not Set				false	arr[hg19] 18q21.31(54,968,435-55,233,378)x2-3	chr18:54968435-55233378
LST.OSCHP	2.67	Gain	4	p16.2	333.635	24	4	STK32B, LINC01587, EVC2, EVC	2	EVC2 (607261), EVC (604831)	CytoRegions Not Set				false	arr[hg19] 4p16.2(5,417,618-5,751,253)x2-3	chr4:5417618-5751253
LST.OSCHP	2.67	Gain	10	q26.3	2432.684	149	38	TCERG1L, LINC01164, PPP2R2D, BNIP3, JAKMIP3, DPYSL4, STK32C, LRRC27, PWWP2B, C10orf91, INPP5A, NKX6-2, CFAP46, LINC01166, LINC01167, LINC01168, ADGRA1-AS1, ADGRA1, KNDC1, UTF1, VENTX, MIR202HG, MIR202, ADAM8, TUBGCP2, ZNF511, CALY, PRAP1, FUOM, ECHS1, MIR3944, PAOX, MTG1, SPRN, SCART1, CYP2E1, SYCE1, SPRNP1	20	PPP2R2D (613992), BNIP3 (603293), JAKMIP3 (611198), DPYSL4 (608407), INPP5A (600106), NKX6-2 (605955), ADGRA1 (612302), KNDC1 (616237), UTF1 (604130), VENTX (607158), ADAM8 (602267), TUBGCP2 (617817), CALY (604647), PRAP1 (609776), FUOM (617725), ECHS1 (602292), PAOX (615853), SPRN (610447), CYP2E1 (124040), SYCE1 (611486)	CytoRegions Not Set				false	arr[hg19] 10q26.3(133,001,619-135,434,303)x2-3	chr10:133001619-135434303
LST.OSCHP	2.67	Gain	5	q14.3	434.949	30	4	TMEM161B, TMEM161B-AS1, LINC02060, LINC00461	1	LINC00461 (616611)	CytoRegions Not Set				false	arr[hg19] 5q14.3(87,527,349-87,962,298)x2-3	chr5:87527349-87962298
LST.OSCHP	2.67	Gain	6	p21.2	204.663	21	3	TMEM217, TBC1D22B, RNF8	2	TBC1D22B (616880), RNF8 (611685)	CytoRegions Not Set				false	arr[hg19] 6p21.2(37,144,403-37,349,066)x2-3	chr6:37144403-37349066
LST.OSCHP	2.67	Gain	16	p13.13	7943.308	530	86	TNFRSF17, SNX29, CPPED1, MIR4718, SHISA9, ERCC4, LINC02185, LINC02186, MRTFB, MIR193BHG, MIR193B, MIR365A, LINC02130, PARN, BFAR, PLA2G10, NPIPA2, NPIPA3, ABCC6P2, NOMO1, MIR3179-4, MIR3179-1, MIR3179-3, MIR3179-2, MIR3670-1, MIR3670-4, MIR3670-2, MIR3670-3, MIR3180-1, MIR3180-3, MIR3180-2, PKD1P3-NPIPA1, LOC100288162, MIR6511A4, MIR6511A2, MIR6511A1, MIR6511A3, MIR6770-1, MIR6770-3, MIR6770-2, NPIPA1, PDXDC1, NTAN1, RRN3, LOC100505915, PKD1P6-NPIPP1, MIR6511B1, MIR6511B2, MIR3180-4, NPIPA5, MPV17L, C16orf45, MARF1, MIR6506, NDE1, MIR484, MYH11, FOPNL, ABCC1, ABCC6, NOMO3, PKD1P4-NPIPA8, PKD1P1, NPIPA8, NPIPA7, XYLT1, LOC102723692, PKD1P5-LOC105376752, NOMO2, ABCC6P1, RPS15A, ARL6IP1, SMG1, TMC7, LOC102723385, COQ7, ITPRIPL2, SYT17, CLEC19A, TMC5, GDE1, CCP110, VPS35L, KNOP1, IQCK, GPRC5B	32	TNFRSF17 (109545), CPPED1 (615603), SHISA9 (613346), ERCC4 (133520), MRTFB (609463), MIR193B (614734), MIR365A (614735), PARN (604212), PLA2G10 (603603), NOMO1 (609157), NPIPA1 (606406), PDXDC1 (614244), NTAN1 (615367), RRN3 (605121), MARF1 (614593), NDE1 (609449), MYH11 (160745), FOPNL (617149), ABCC1 (158343), ABCC6 (603234), NOMO3 (609159), XYLT1 (608124), NOMO2 (609158), RPS15A (603674), ARL6IP1 (607669), SMG1 (607032), TMC7 (617198), COQ7 (601683), TMC5 (617197), GDE1 (605943), CCP110 (609544), GPRC5B (605948)	CytoRegions Not Set				false	arr[hg19] 16p13.13p12.3(12,059,037-20,002,345)x2-3	chr16:12059037-20002345
LST.OSCHP	2.67	Gain	4	q13.2	5624.827	366	58	UGT2A2, UGT2A1, SULT1B1, SULT1E1, CSN1S1, CSN2, STATH, HTN3, HTN1, CSN1S2AP, CSN1S2BP, PRR27, ODAM, FDCSP, CSN3, CABS1, SMR3A, SMR3B, OPRPN, MUC7, AMTN, AMBN, ENAM, JCHAIN, UTP3, RUFY3, GRSF1, MOB1B, DCK, SLC4A4, GC, NPFFR2, ADAMTS3, COX18, ANKRD17, ALB, AFP, AFM, LINC02499, RASSF6, CXCL8, CXCL6, PF4V1, CXCL1, PF4, PPBP, CXCL5, CXCL3, PPBPP2, CXCL2, MTHFD2L, EPGN, EREG, AREG, BTC, PARM1, LOC100507388, LINC02562	48	UGT2A1 (604716), SULT1B1 (608436), SULT1E1 (600043), CSN1S1 (115450), CSN2 (115460), STATH (184470), HTN3 (142702), HTN1 (142701), ODAM (614843), FDCSP (607241), CSN3 (601695), SMR3B (611593), OPRPN (608936), MUC7 (158375), AMTN (610912), AMBN (601259), ENAM (606585), JCHAIN (147790), UTP3 (611614), RUFY3 (611194), GRSF1 (604851), MOB1B (609282), DCK (125450), SLC4A4 (603345), GC (139200), NPFFR2 (607449), ADAMTS3 (605011), COX18 (610428), ANKRD17 (615929), ALB (103600), AFP (104150), AFM (104145), RASSF6 (612620), CXCL8 (146930), CXCL6 (138965), PF4V1 (173461), CXCL1 (155730), PF4 (173460), PPBP (121010), CXCL5 (600324), CXCL3 (139111), PPBPP2 (611591), CXCL2 (139110), MTHFD2L (614047), EREG (602061), AREG (104640), BTC (600345), PARM1 (617688)	CytoRegions Not Set				false	arr[hg19] 4q13.2q13.3(70,477,571-76,102,398)x2-3	chr4:70477571-76102398
LST.OSCHP	2.67	Gain	7	q11.23	3322.466	222	23	UPK3B, SPDYE16, LOC100133091, POMZP3, DTX2P1-UPK3BP1-PMS2P11, SPDYE11, SPDYE17, PMS2P9, SPDYE18, FAM185BP, CCDC146, FGL2, GSAP, LOC101927243, PTPN12, APTR, RSBN1L, TMEM60, PHTF2, MAGI2, RPL13AP17, MAGI2-AS2, MAGI2-AS3	8	UPK3B (611887), POMZP3 (600587), FGL2 (605351), GSAP (613552), PTPN12 (600079), APTR (616048), PHTF2 (616785), MAGI2 (606382)	CytoRegions Not Set				false	arr[hg19] 7q11.23q21.11(76,136,388-79,458,854)x2-3	chr7:76136388-79458854
LST.OSCHP	2.67	Gain	10	q21.2	607.587	40	3	ZNF365, ADO, EGR2	3	ZNF365 (607818), ADO (611392), EGR2 (129010)	CytoRegions Not Set				false	arr[hg19] 10q21.2q21.3(64,251,976-64,859,563)x2-3	chr10:64251976-64859563
LST.OSCHP	2.67	Gain	7	q22.1	946.204	89	51	ZSCAN25, CYP3A5, CYP3A7-CYP3A51P, CYP3A7, CYP3A4, CYP3A43, OR2AE1, TRIM4, GJC3, AZGP1, AZGP1P1, ZKSCAN1, ZSCAN21, ZNF3, COPS6, MCM7, MIR25, MIR93, MIR106B, AP4M1, TAF6, CNPY4, MBLAC1, LAMTOR4, C7orf43, MIR4658, GAL3ST4, GPC2, STAG3, CASTOR3, PVRIG, SPDYE3, PMS2P1, STAG3L5P-PVRIG2P-PILRB, STAG3L5P, PVRIG2P, MIR6840, PILRB, PILRA, ZCWPW1, MEPCE, PPP1R35, C7orf61, TSC22D4, NYAP1, AGFG2, SAP25, LRCH4, ZASP, FBXO24, PCOLCE-AS1	30	CYP3A5 (605325), CYP3A7 (605340), CYP3A4 (124010), CYP3A43 (606534), GJC3 (611925), AZGP1 (194460), ZKSCAN1 (601260), ZSCAN21 (601261), ZNF3 (194510), COPS6 (614729), MCM7 (600592), MIR25 (612150), MIR93 (612984), MIR106B (612983), AP4M1 (602296), TAF6 (602955), CNPY4 (610047), GAL3ST4 (608235), STAG3 (608489), PVRIG (617012), SPDYE3 (617625), PMS2P1 (605038), PILRB (605342), PILRA (605341), MEPCE (611478), TSC22D4 (611914), NYAP1 (615477), AGFG2 (604019),  (617677), FBXO24 (609097)	CytoRegions Not Set				false	arr[hg19] 7q22.1(99,245,913-100,192,117)x2-3	chr7:99245913-100192117
LST.OSCHP	2.33	Gain	12	q12	741.003	51	2	ALG10B, CPNE8	0		CytoRegions Not Set				false	arr[hg19] 12q12(38,436,234-39,177,237)x2-3	chr12:38436234-39177237
LST.OSCHP	2.33	Gain	19	q13.33	10897.844	830	554	BICRA, EHD2, NOP53, SNORD23, NOP53-AS1, SELENOW, TPRX1, CRX, SULT2A1, SNAR-A12, SNAR-A13, SNAR-C5, SNAR-C1, SNAR-C2, SNAR-A1, SNAR-A2, SNAR-A6, SNAR-A3, SNAR-A10, SNAR-A4, SNAR-A8, SNAR-A11, SNAR-A5, SNAR-A14, SNAR-A9, SNAR-A7, SNAR-C4, SNAR-C3, BSPH1, ELSPBP1, CABP5, PLA2G4C, PLA2G4C-AS1, LIG1, ZSWIM9, CARD8, CARD8-AS1, ZNF114, CCDC114, EMP3, TMEM143, SYNGR4, KDELR1, GRIN2D, GRWD1, KCNJ14, CYTH2, LMTK3, SULT2B1, FAM83E, SPACA4, RPL18, SPHK2, DBP, CA11, SEC1P, NTN5, FUT2, LOC105447645, MAMSTR, RASIP1, IZUMO1, FUT1, FGF21, BCAT2, HSD17B14, PLEKHA4, PPP1R15A, TULP2, NUCB1, NUCB1-AS1, DHDH, BAX, FTL, GYS1, RUVBL2, MIR6798, LHB, LOC101059948, CGB3, SNAR-G2, CGB2, CGB1, SNAR-G1, CGB5, CGB8, CGB7, NTF4, KCNA7, SNRNP70, LIN7B, C19orf73, PPFIA3, HRC, TRPM4, SLC6A16, MIR4324, CD37, TEAD2, DKKL1, LOC101928295, CCDC155, PTH2, GFY, SLC17A7, PIH1D1, ALDH16A1, FLT3LG, RPL13A, RPL13AP5, SNORD32A, SNORD33, SNORD34, SNORD35A, RPS11, SNORD35B, MIR150, FCGRT, RCN3, NOSIP, PRRG2, PRR12, RRAS, SCAF1, IRF3, BCL2L12, PRMT1, MIR5088, ADM5, CPT1C, TSKS, AP2A1, MIR6799, FUZ, MED25, MIR6800, PTOV1-AS1, PTOV1, MIR4749, PTOV1-AS2, PNKP, AKT1S1, TBC1D17, MIR4750, IL4I1, NUP62, ATF5, MIR4751, SIGLEC11, SIGLEC16, VRK3, ZNF473, LOC400710, SNAR-B2, SNAR-B1, SNAR-D, IZUMO2, MYH14, KCNC3, NAPSB, NAPSA, NR1H2, POLD1, SPIB, MYBPC2, FAM71E1, EMC10, JOSD2, ASPDH, LRRC4B, SNAR-F, SYT3, C19orf81, SHANK1, CLEC11A, GPR32, LOC105372440, ACP4, C19orf48, SNORD88B, SNORD88A, SNORD88C, LINC01869, KLK1, KLK15, LOC105372441, KLK3, KLK2, KLKP1, KLK4, KLK5, KLK6, KLK7, KLK8, KLK9, KLK10, KLK11, KLK12, KLK13, KLK14, CTU1, SIGLEC9, SIGLEC7, LOC101928517, SIGLEC17P, MIR8074, CD33, SIGLECL1, LINC01872, IGLON5, VSIG10L, ETFB, CLDND2, NKG7, LIM2, C19orf84, SIGLEC10, LOC100129083, SIGLEC8, CEACAM18, SIGLEC12, SIGLEC6, ZNF175, LINC01530, SIGLEC5, SIGLEC14, SPACA6P-AS, SPACA6, MIR99B, MIRLET7E, MIR125A, HAS1, FPR1, FPR2, FPR3, ZNF577, ZNF649-AS1, ZNF649, ZNF613, ZNF350-AS1, ZNF350, ZNF615, ZNF614, ZNF432, ZNF841, ZNF616, ZNF836, PPP2R1A, MIR6801, ZNF766, MIR643, ZNF480, ZNF610, ZNF880, ZNF528-AS1, ZNF528, ZNF534, ZNF578, ZNF808, ZNF701, ZNF137P, ZNF83, ZNF611, ZNF600, ZNF28, ZNF468, ZNF320, ZNF888, ZNF321P, ZNF816-ZNF321P, ZNF816, ZNF702P, ERVV-1, ERVV-2, ZNF160, ZNF415, ZNF347, ZNF665, ZNF818P, ZNF677, VN1R2, VN1R4, FAM90A27P, BIRC8, ZNF845, ZNF525, ZNF765, ZNF765-ZNF761, TPM3P9, ZNF761, ZNF813, ZNF331, LOC284379, DPRX, MIR512-2, MIR512-1, MIR1323, MIR498, MIR520E, MIR515-1, MIR515-2, MIR519E, MIR520F, MIR519C, MIR1283-1, MIR520A, MIR526B, MIR519B, MIR525, MIR523, MIR518F, MIR520B, MIR518B, MIR526A1, MIR520C, MIR518C, MIR524, MIR517A, MIR519D, MIR521-2, MIR520D, MIR517B, MIR520G, MIR516B2, MIR526A2, MIR518E, MIR518A1, MIR518D, MIR516B1, MIR518A2, MIR517C, MIR520H, MIR521-1, MIR522, MIR519A1, MIR527, MIR516A1, MIR1283-2, MIR516A2, MIR519A2, MIR371A, MIR371B, MIR372, MIR373, NLRP12, MYADM, PRKCG, CACNG7, CACNG8, MIR935, CACNG6, VSTM1, TARM1, OSCAR, NDUFA3, TFPT, PRPF31, CNOT3, LENG1, TMC4, MBOAT7, TSEN34, RPS9, LILRB3, LILRA6, LILRB5, LILRB2, MIR4752, LILRA3, LILRA5, LILRA4, LAIR1, TTYH1, LENG8-AS1, LENG8, LENG9, CDC42EP5, LAIR2, KIR3DX1, LILRA2, LILRA1, LILRB1, MIR8061, LILRB4, LILRP2, KIR3DL3, KIR2DL3, LOC101928804, KIR2DL1, KIR2DL4, KIR3DL1, KIR2DS4, KIR3DL2, FCAR, NCR1, NLRP7, NLRP2, GP6, RDH13, EPS8L1, PPP1R12C, MIR7975, TNNT1, TNNI3, DNAAF3, SYT5, PTPRH, TMEM86B, PPP6R1, MIR6804, MIR6802, MIR6803, HSPBP1, BRSK1, TMEM150B, KMT5C, COX6B2, FAM71E2, IL11, TMEM190, TMEM238, RPL28, MIR6805, UBE2S, SNORD157, SHISA7, ISOC2, ZNF628, NAT14, SSC5D, SBK2, SBK3, ZNF579, FIZ1, ZNF524, ZNF865, ZNF784, ZNF580, ZNF581, CCDC106, U2AF2, EPN1, NLRP9, RFPL4A, RFPL4AL1, NLRP11, NLRP4, NLRP13, NLRP8, NLRP5, LINC01864, ZNF787, ZNF444, GALP, ZSCAN5B, ZSCAN5C, ZSCAN5A, EDDM13, ZNF542P, ZNF582, ZNF582-AS1, ZNF583, ZNF667, ZNF667-AS1, ZNF471, ZFP28, ZNF470, ZNF71, SMIM17, ZNF835, ZIM2-AS1, ZIM2, PEG3, PEG3-AS1, MIMT1, USP29, ZIM3, DUXA, ZNF264, AURKC, ZNF805, ZNF460-AS1, ZNF460, ZNF543, ZNF304, TRAPPC2B, ZNF547, ZNF548, ZNF17, ZNF749, VN1R1, ZNF772, ZNF419, ZNF773, ZNF549, ZNF550, ZNF416, ZIK1, ZNF530, ZNF134, ZNF211, ZSCAN4, ZNF551, ZNF154, ZNF671, ZNF776, ZNF586, ZNF552, FKBP1AP1, ZNF587B, ZNF587, UBE2CP5, ZNF814, ZNF417, ZNF418, ZNF256, C19orf18, ZNF606, LOC100128398, ZSCAN1, ZNF135, ZSCAN18, ZNF329, ZNF274, ZNF544, ZNF8, ZNF8-ERVK3-1, ERVK3-1, LOC105372480, ZSCAN22, MIR6806, A1BG, A1BG-AS1, ZNF497, LOC105372483, ZNF837, MIR4754, RPS5, RNF225, LINC02560, ZNF584, ZNF132, ZNF324B, ZNF324, ZNF446, SLC27A5, ZBTB45, TRIM28, MIR6807, CHMP2A, UBE2M, MZF1-AS1, MZF1, CENPBD1P1	272	BICRA (605690), EHD2 (605890), NOP53 (605691), SELENOW (603235), TPRX1 (611166), CRX (602225), SULT2A1 (125263), BSPH1 (612213), ELSPBP1 (607443), CABP5 (607315), PLA2G4C (603602), LIG1 (126391), CARD8 (609051), ZNF114 (603996), CCDC114 (615038), EMP3 (602335), SYNGR4 (608373), KDELR1 (131235), GRIN2D (602717), GRWD1 (610597), KCNJ14 (603953), CYTH2 (602488), SULT2B1 (604125), SPACA4 (609932), RPL18 (604179), SPHK2 (607092), DBP (124097), CA11 (604644), FUT2 (182100), MAMSTR (610349), RASIP1 (609623), IZUMO1 (609278), FUT1 (211100), FGF21 (609436), BCAT2 (113530), HSD17B14 (612832), PLEKHA4 (607769), PPP1R15A (611048), TULP2 (602309), NUCB1 (601323), DHDH (606377), BAX (600040), FTL (134790), GYS1 (138570), RUVBL2 (604788), LHB (152780), CGB3 (118860), CGB2 (608824), CGB1 (608823), CGB5 (608825), CGB8 (608827), CGB7 (608826), NTF4 (162662), KCNA7 (176268), SNRNP70 (180740), LIN7B (612331), PPFIA3 (603144), HRC (142705), TRPM4 (606936), SLC6A16 (607972), CD37 (151523), TEAD2 (601729), DKKL1 (605418), PTH2 (608386), SLC17A7 (605208), PIH1D1 (611480), ALDH16A1 (613358), FLT3LG (600007), RPS11 (180471), MIR150 (611114), FCGRT (601437), NOSIP (616759), PRRG2 (604429), PRR12 (616633), RRAS (165090), SCAF1 (617264), IRF3 (603734), BCL2L12 (610837), PRMT1 (602950), CPT1C (608846), TSKS (608253), AP2A1 (601026), FUZ (610622), MED25 (610197), PTOV1 (610195), PNKP (605610), AKT1S1 (610221), TBC1D17 (616659), IL4I1 (609742), NUP62 (605815), ATF5 (606398), SIGLEC11 (607157), ZNF473 (617908), MYH14 (608568), KCNC3 (176264), NAPSA (605631), NR1H2 (600380), POLD1 (174761), SPIB (606802), MYBPC2 (160793), EMC10 (614545), JOSD2 (615324), SYT3 (600327), SHANK1 (604999), CLEC11A (604713), GPR32 (603195), ACP4 (606362), KLK1 (147910), KLK15 (610601), KLK3 (176820), KLK2 (147960), KLK4 (603767), KLK5 (605643), KLK6 (602652), KLK7 (604438), KLK8 (605644), KLK9 (605504), KLK10 (602673), KLK11 (604434), KLK12 (605539), KLK13 (605505), KLK14 (606135), CTU1 (612694), SIGLEC9 (605640), SIGLEC7 (604410), CD33 (159590), VSIG10L (617740), ETFB (130410), NKG7 (606008), LIM2 (154045), SIGLEC10 (606091), SIGLEC8 (605639), SIGLEC12 (606094), SIGLEC6 (604405), ZNF175 (601139), SIGLEC5 (604200), MIR99B (614510), MIRLET7E (611250), MIR125A (611191), HAS1 (601463), FPR1 (136537), FPR2 (136538), FPR3 (136539), ZNF649 (611903), ZNF350 (605422), PPP2R1A (605983), ZNF480 (613910), ZNF528 (615580), ZNF137P (604079), ZNF83 (194558), ZNF468 (616841), ZNF320 (606427), ZNF160 (600398), ZNF331 (606043), DPRX (611165), MIR520C (615908), MIR519D (614247), MIR520G (616272), MIR520H (614755), MIR371A (612043), MIR372 (612044), MIR373 (611954), NLRP12 (609648), MYADM (609959), PRKCG (176980), CACNG7 (606899), CACNG8 (606900), CACNG6 (606898), VSTM1 (616804), TARM1 (616802), OSCAR (606862), NDUFA3 (603832), TFPT (609519), PRPF31 (606419), CNOT3 (604910), TMC4 (617181), MBOAT7 (606048), TSEN34 (608754), RPS9 (603631), LILRB3 (604820), LILRB5 (604814), LILRB2 (604815), LILRA3 (604818), LILRA5 (606047), LILRA4 (607517), LAIR1 (602992), TTYH1 (605784), LENG8 (616575), CDC42EP5 (609171), LAIR2 (602993), LILRA2 (604812), LILRA1 (604810), LILRB1 (604811), LILRB4 (604821), KIR3DL3 (610095), KIR2DL3 (604938), KIR2DL1 (604936), KIR2DL4 (604945), KIR3DL1 (604946), KIR2DS4 (604955), KIR3DL2 (604947), FCAR (147045), NCR1 (604530), NLRP7 (609661), NLRP2 (609364), GP6 (605546), EPS8L1 (614987), PPP1R12C (613245), TNNT1 (191041), TNNI3 (191044), DNAAF3 (614566), SYT5 (600782), PTPRH (602510), TMEM86B (617806), PPP6R1 (610875), HSPBP1 (612939), BRSK1 (609235), TMEM150B (617291), KMT5C (613198), IL11 (147681), RPL28 (603638), UBE2S (610309), SHISA7 (617328), ISOC2 (612928), ZNF628 (610671), FIZ1 (609133), ZNF580 (617888), CCDC106 (613478), U2AF2 (191318), EPN1 (607262), NLRP9 (609663), RFPL4A (612601), NLRP11 (609664), NLRP4 (609645), NLRP13 (609660), NLRP8 (609659), NLRP5 (609658), ZNF444 (607874), GALP (611178), ZNF582 (615600), ZNF667 (611024), ZFP28 (616798), ZNF71 (194545), PEG3 (601483), USP29 (609546), DUXA (611168), ZNF264 (604668), AURKC (603495), ZNF460 (604755), ZNF543 (616847), ZNF304 (613840), VN1R1 (605234), ZNF419 (617410), ZNF134 (604076), ZNF211 (601856), ZSCAN4 (613419), ZNF154 (604085), ZNF256 (606956), ZNF606 (613905), ZNF135 (604077), ZNF274 (605467), ZNF8 (194532), ZSCAN22 (165260), A1BG (138670), RPS5 (603630), ZNF132 (604074), ZNF324 (617477), SLC27A5 (603314), TRIM28 (601742), CHMP2A (610893), UBE2M (603173), MZF1 (194550)	CytoRegions Not Set				false	arr[hg19] 19q13.33q13.43(48,195,395-59,093,239)x2-3	chr19:48195395-59093239
LST.OSCHP	2.33	Gain	11	q13.4	61094.414	4772	547	C2CD3, PPME1, P4HA3, P4HA3-AS1, PGM2L1, MIR548AL, KCNE3, LIPT2, LOC100287896, POLD3, CHRDL2, MIR4696, RNF169, XRRA1, SPCS2, NEU3, OR2AT4, SLCO2B1, TPBGL, ARRB1, MIR326, RPS3, SNORD15A, SNORD15B, KLHL35, GDPD5, SERPINH1, LOC105369391, MAP6, MOGAT2, LOC283214, DGAT2, LOC100506113, UVRAG, WNT11, THAP12, GVQW3, EMSY, LRRC32, GUCY2EP, TSKU, LOC101928837, ACER3, B3GNT6, CAPN5, OMP, MYO7A, GDPD4, PAK1, LOC646029, AQP11, CLNS1A, RSF1, AAMDC, INTS4, KCTD14, NDUFC2-KCTD14, THRSP, NDUFC2, ALG8, KCTD21-AS1, KCTD21, USP35, GAB2, LOC101928865, NARS2, LOC101928896, TENM4, MIR708, MIR5579, LOC101928944, MIR4300HG, MIR4300, FAM181B, PRCP, DDIAS, RAB30, SNORA70E, RAB30-AS1, PCF11, LOC100506282, PCF11-AS1, ANKRD42, CCDC90B, DLG2, TMEM126B, TMEM126A, CREBZF, CCDC89, SYTL2, CCDC83, PICALM, EED, MIR6755, HIKESHI, CCDC81, ME3, PRSS23, OR7E2P, FZD4, LOC100506368, TMEM135, LOC105369423, RAB38, MIR3166, CTSC, GRM5-AS1, GRM5, TYR, NOX4, FOLH1B, TRIM77, TRIM49, TRIM53AP, TRIM51EP, TRIM64B, TRIM49D2, TRIM49D1, TRIM64, TRIM49C, UBTFL1, NAALAD2, CHORDC1, DISC1FP1, MIR4490, MIR1261, FAT3, LOC105369431, MTNR1B, SLC36A4, DEUP1, SMCO4, CEP295, SCARNA9, TAF1D, SNORA25, SNORA32, SNORD6, SNORA1, SNORA8, SNORD5, SNORA18, MIR1304, SNORA40, C11orf54, MED17, VSTM5, HEPHL1, PANX1, IZUMO1R, GPR83, MRE11, MIR548L, ANKRD49, C11orf97, FUT4, LOC105369438, PIWIL4, AMOTL1, CWC15, KDM4D, KDM4E, SRSF8, ENDOD1, LOC101929295, SESN3, LOC100129203, FAM76B, CEP57, MTMR2, MAML2, MIR1260B, CCDC82, JRKL, JRKL-AS1, LOC105369443, CNTN5, LOC100128386, ARHGAP42, SNORD13I, PGR, PGR-AS1, TRPC6, MIR3920, ANGPTL5, CEP126, CFAP300, YAP1, BIRC3, BIRC2, TMEM123, LOC101928424, LOC102723838, MMP7, MMP20, MMP27, MMP8, MMP10, WTAPP1, MMP1, MMP3, MMP12, MMP13, DCUN1D5, DYNC2H1, MIR4693, PDGFD, DDI1, LINC02552, CASP12, LOC643733, CASP4, CASP5, CASP1, CARD16, CASP1P2, CARD17, CARD18, GRIA4, MSANTD4, KBTBD3, AASDHPPT, LOC105369473, LOC101928535, GUCY1A2, CWF19L2, ALKBH8, ELMOD1, SLN, SLC35F2, RAB39A, CUL5, ACAT1, NPAT, ATM, C11orf65, KDELC2, EXPH5, DDX10, C11orf87, ZC3H12C, RDX, LOC105369486, FDX1, ARHGAP20, LINC02550, C11orf53, COLCA1, COLCA2, MIR4491, POU2AF1, LOC100132078, BTG4, LOC728196, MIR34B, MIR34C, C11orf88, LAYN, SIK2, PPP2R1B, ALG9, FDXACB1, C11orf1, CRYAB, HSPB2, HSPB2-C11orf52, C11orf52, DIXDC1, DLAT, PIH1D2, NKAPD1, TIMM8B, SDHD, IL18, TEX12, BCO2, PTS, PLET1, LOC100132686, LOC283140, LOC101928823, LOC387810, LOC101928847, NCAM1, NCAM1-AS1, TTC12, ANKK1, DRD2, MIR4301, TMPRSS5, ZW10, CLDN25, USP28, HTR3B, HTR3A, ZBTB16, NNMT, LOC101928940, C11orf71, RBM7, REXO2, NXPE1, NXPE4, NXPE2, CADM1, LOC105369509, LOC105369507, LOC101928985, LINC00900, LOC101929011, BUD13, ZPR1, APOA5, APOA4, APOC3, APOA1, APOA1-AS, SIK3, PAFAH1B2, SIDT2, LOC100652768, TAGLN, PCSK7, RNF214, BACE1, BACE1-AS, CEP164, DSCAML1, FXYD2, FXYD6-FXYD2, FXYD6, TMPRSS13, IL10RA, SMIM35, TMPRSS4, SCN4B, SCN2B, JAML, MPZL3, MPZL2, CD3E, CD3D, CD3G, UBE4A, LOC100131626, ATP5MG, KMT2A, LOC101929089, TTC36, TMEM25, IFT46, ARCN1, PHLDB1, MIR6716, TREH, DDX6, CXCR5, BCL9L, MIR4492, UPK2, FOXR1, CCDC84, RPL23AP64, RPS25, TRAPPC4, SLC37A4, HYOU1, VPS11, HMBS, H2AFX, DPAGT1, C2CD2L, HINFP, ABCG4, NLRX1, PDZD3, CCDC153, SNORD150, CBL, MCAM, MIR6756, RNF26, C1QTNF5, MFRP, USP2, USP2-AS1, THY1, NECTIN1, LOC102724301, TRIM29, OAF, POU2F3, LOC649133, TMEM136, ARHGEF12, GRIK4, LOC105369532, LOC101929227, LOC101929208, TBCEL, TECTA, SC5D, SORL1, MIR100HG, MIR125B1, BLID, MIRLET7A2, MIR100, UBASH3B, CRTAM, JHY, BSX, LOC341056, HSPA8, CLMP, MIR4493, LOC100128242, GRAMD1B, SCN3B, ZNF202, OR6X1, OR6M1, TMEM225, OR8D4, OR4D5, OR6T1, OR10S1, OR10G6, OR10G4, OR10G9, OR10G8, OR10G7, VWA5A, OR10D3, OR8G2P, OR8G1, OR8G5, OR8D1, OR8D2, OR8B2, OR8B3, OR8B4, OR8B8, OR8B12, OR8A1, PANX3, TBRG1, SIAE, SPA17, NRGN, VSIG2, ESAM, LOC101929340, MSANTD2, LOC100507283, ROBO3, ROBO4, HEPN1, HEPACAM, CCDC15, SLC37A2, TMEM218, PKNOX2-AS1, PKNOX2, FEZ1, LOC403312, EI24, STT3A-AS1, STT3A, CHEK1, ACRV1, PATE1, PATE2, PATE3, PATE4, HYLS1, PUS3, DDX25, CDON, RPUSD4, FAM118B, SRPRA, FOXRED1, TIRAP, DCPS, GSEC, ST3GAL4, KIRREL3, LOC101929427, KIRREL3-AS2, MIR3167, KIRREL3-AS3, LOC101929473, LOC101929497, LINC02098, ETS1, MIR6090, LOC101929517, LOC101929538, FLI1, SENCR, KCNJ1, KCNJ5, C11orf45, TP53AIP1, ARHGAP32, LOC399975, BARX2, LINC01395, TMEM45B, NFRKB, PRDM10, LINC00167, APLP2, ST14, ZBTB44, LOC646383, ADAMTS8, ADAMTS15, MIR8052, C11orf44, LINC02551, LOC103611081, SNX19, NTM, LOC101929653, NTM-AS1, NTM-IT, OPCML, LOC646522, SPATA19, MIR4697HG, MIR4697, IGSF9B, LOC100128239, JAM3, SNORD153, NCAPD3, VPS26B, THYN1, ACAD8, GLB1L3, GLB1L2, B3GAT1, LOC283177, LOC729305, LOC100507548	304	C2CD3 (615944), PPME1 (611117), P4HA3 (608987), PGM2L1 (611610), KCNE3 (604433), LIPT2 (617659), POLD3 (611415), CHRDL2 (613127), XRRA1 (609788), NEU3 (604617), SLCO2B1 (604988), ARRB1 (107940), MIR326 (613755), RPS3 (600454), SNORD15A (600455), GDPD5 (609632), SERPINH1 (600943), MAP6 (601783), MOGAT2 (610270), DGAT2 (606983), UVRAG (602493), WNT11 (603699), THAP12 (607374), EMSY (608574), LRRC32 (137207), TSKU (608015), ACER3 (617036), B3GNT6 (615315), CAPN5 (602537), OMP (164340), MYO7A (276903), PAK1 (602590), AQP11 (609914), CLNS1A (602158), RSF1 (608522), INTS4 (611348), THRSP (601926), NDUFC2 (603845), ALG8 (608103), GAB2 (606203), NARS2 (612803), TENM4 (610084), PRCP (176785), RAB30 (605693), PCF11 (608876), DLG2 (603583), TMEM126B (615533), TMEM126A (612988), CREBZF (606444), SYTL2 (612880), PICALM (603025), EED (605984), HIKESHI (614908), ME3 (604626), FZD4 (604579), TMEM135 (616360), RAB38 (606281), CTSC (602365), GRM5 (604102), TYR (606933), NOX4 (605261), FOLH1B (609020), TRIM49 (606124), UBTFL1 (613696), NAALAD2 (611636), CHORDC1 (604353), FAT3 (612483), MTNR1B (600804), SLC36A4 (613760), DEUP1 (617148), SMCO4 (609477), CEP295 (617728), TAF1D (612823), C11orf54 (615810), MED17 (603810), PANX1 (608420), IZUMO1R (615737), GPR83 (605569), MRE11 (600814), FUT4 (104230), PIWIL4 (610315), AMOTL1 (614657), KDM4D (609766), KDM4E (616581), SRSF8 (603269), SESN3 (607768), CEP57 (607951), MTMR2 (603557), MAML2 (607537), MIR1260B (615372), JRKL (603211), CNTN5 (607219), ARHGAP42 (615936), PGR (607311), TRPC6 (603652), ANGPTL5 (607666), CEP126 (614634), YAP1 (606608), BIRC3 (601721), BIRC2 (601712), TMEM123 (606356), MMP7 (178990), MMP20 (604629), MMP8 (120355), MMP10 (185260), MMP1 (120353), MMP3 (185250), MMP12 (601046), MMP13 (600108), DCUN1D5 (616522), DYNC2H1 (603297), PDGFD (609673), CASP12 (608633), CASP4 (602664), CASP5 (602665), CASP1 (147678), CARD16 (615680), CARD17 (609490), CARD18 (605354), GRIA4 (138246), AASDHPPT (607756), GUCY1A2 (601244), ALKBH8 (613306), ELMOD1 (615456), SLN (602203), CUL5 (601741), ACAT1 (607809), NPAT (601448), ATM (607585), EXPH5 (612878), DDX10 (601235), ZC3H12C (615001), RDX (179410), FDX1 (103260), ARHGAP20 (609568), COLCA1 (615693), COLCA2 (615694), POU2AF1 (601206), BTG4 (605673), MIR34B (611374), MIR34C (611375), SIK2 (608973), PPP2R1B (603113), ALG9 (606941), CRYAB (123590), HSPB2 (602179), DIXDC1 (610493), DLAT (608770), TIMM8B (606659), SDHD (602690), IL18 (600953), TEX12 (605791), BCO2 (611740), PTS (612719), PLET1 (611904), NCAM1 (116930), TTC12 (610732), ANKK1 (608774), DRD2 (126450), TMPRSS5 (606751), ZW10 (603954), USP28 (610748), HTR3B (604654), HTR3A (182139), ZBTB16 (176797), NNMT (600008), RBM7 (612413), REXO2 (607149), CADM1 (605686), ZPR1 (603901), APOA5 (606368), APOA4 (107690), APOC3 (107720), APOA1 (107680), SIK3 (614776), PAFAH1B2 (602508), SIDT2 (617551), TAGLN (600818), PCSK7 (604872), BACE1 (604252), BACE1-AS (614263), CEP164 (614848), DSCAML1 (611782), FXYD2 (601814), FXYD6 (606683), TMPRSS13 (610050), IL10RA (146933), TMPRSS4 (606565), SCN4B (608256), SCN2B (601327), JAML (609770), MPZL3 (611707), MPZL2 (604873), CD3E (186830), CD3D (186790), CD3G (186740), UBE4A (603753), ATP5MG (617473), KMT2A (159555), TMEM25 (613934), ARCN1 (600820), PHLDB1 (612834), TREH (275360), DDX6 (600326), CXCR5 (601613), BCL9L (609004), UPK2 (611558), FOXR1 (615755), RPS25 (180465), TRAPPC4 (610971), SLC37A4 (602671), HYOU1 (601746), VPS11 (608549), HMBS (609806), H2AFX (601772), DPAGT1 (191350), C2CD2L (617582), HINFP (607099), ABCG4 (607784), NLRX1 (611947), PDZD3 (607146), CBL (165360), MCAM (155735), RNF26 (606130), C1QTNF5 (608752), MFRP (606227), USP2 (604725), THY1 (188230), NECTIN1 (600644), TRIM29 (610658), POU2F3 (607394), ARHGEF12 (604763), GRIK4 (600282), TBCEL (610451), TECTA (602574), SC5D (602286), SORL1 (602005), MIR100HG (615965), MIR125B1 (610104), BLID (608853), MIRLET7A2 (612142), MIR100 (613186), UBASH3B (609201), CRTAM (612597), JHY (617594), BSX (611074), HSPA8 (600816), CLMP (611693), SCN3B (608214), ZNF202 (603430), VWA5A (602929), PANX3 (608422), TBRG1 (610614), SIAE (610079), SPA17 (608621), NRGN (602350), VSIG2 (606011), ESAM (614281), ROBO3 (608630), ROBO4 (607528), HEPN1 (611641), HEPACAM (611642), PKNOX2 (613066), FEZ1 (604825), EI24 (605170), STT3A (601134), CHEK1 (603078), ACRV1 (102525), PATE1 (606861), HYLS1 (610693), PUS3 (616283), DDX25 (607663), CDON (608707), RPUSD4 (617488), FAM118B (616587), SRPRA (182180), FOXRED1 (613622), TIRAP (606252), DCPS (610534), ST3GAL4 (104240), KIRREL3 (607761), ETS1 (164720), FLI1 (193067), SENCR (615815), KCNJ1 (600359), KCNJ5 (600734), TP53AIP1 (605426), ARHGAP32 (608541), BARX2 (604823), NFRKB (164013), APLP2 (104776), ST14 (606797), ADAMTS8 (605175), ADAMTS15 (607509), NTM (607938), OPCML (600632), SPATA19 (609805), IGSF9B (613773), JAM3 (606871), NCAPD3 (609276), VPS26B (610027), THYN1 (613739), ACAD8 (604773), B3GAT1 (151290)	CytoRegions Not Set				false	arr[hg19] 11q13.4q25(73,844,433-134,938,847)x2-3	chr11:73844433-134938847
LST.OSCHP	2.33	Gain	18	q22.1	815.005	55	1	CDH19	1	CDH19 (603016)	CytoRegions Not Set				false	arr[hg19] 18q22.1(63,670,749-64,485,754)x2-3	chr18:63670749-64485754
LST.OSCHP	2.33	Gain	4	q21.1	404.603	28	10	CXCL9, ART3, CXCL10, CXCL11, NUP54, SCARB2, FAM47E, FAM47E-STBD1, STBD1, CCDC158	7	CXCL9 (601704), ART3 (603086), CXCL10 (147310), CXCL11 (604852), NUP54 (607607), SCARB2 (602257), STBD1 (607406)	CytoRegions Not Set				false	arr[hg19] 4q21.1(76,928,427-77,333,030)x2-3	chr4:76928427-77333030
LST.OSCHP	2.33	Gain	2	q31.1	66106.665	4892	574	EVX2, HOXD13, HOXD12, HOXD11, HOXD10, HOXD9, HOXD8, HOXD-AS2, LOC401021, MIR10B, HOXD4, HOXD3, HAGLR, HAGLROS, HOXD1, MIR7704, MTX2, MIR1246, LINC01116, LINC01117, HNRNPA3, MIR4444-2, MIR4444-1, NFE2L2, MIR3128, LOC100130691, MIR6512, AGPS, TTC30B, TTC30A, PDE11A, LOC105373764, RBM45, OSBPL6, MIR548N, LOC101927027, PRKRA, PJVK, FKBP7, PLEKHA3, TTN-AS1, TTN, LOC101927055, CCDC141, SESTD1, ZNF385B, MIR1258, CWC22, SCHLAP1, UBE2E3, LINC01934, MIR4437, ITGA4, CERKL, NEUROD1, ITPRID2, PPP1R1C, PDE1A, DNAJC10, FRZB, NCKAP1, DUSP19, NUP35, MIR548AE1, ZNF804A, LOC105373782, LOC101927196, FSIP2, FSIP2-AS1, LINC01473, ZC3H15, ITGAV, FAM171B, ZSWIM2, CALCRL, TFPI, LINC01090, GULP1, MIR561, DIRC1, COL3A1, MIR1245A, MIR1245B, MIR3606, COL5A2, MIR3129, WDR75, SLC40A1, ASDURF, ASNSD1, ANKAR, OSGEPL1, OSGEPL1-AS1, ORMDL1, PMS1, MSTN, C2orf88, HIBCH, INPP1, MFSD6, NEMP2, NAB1, GLS, STAT1, LOC105373805, STAT4, MYO1B, NABP1, LOC105747689, CAVIN2, TMEFF2, PCGEM1, LINC01821, LINC01790, SLC39A10, DNAH7, STK17B, HECW2, LOC101927482, CCDC150, LOC100130452, GTF3C3, C2orf66, PGAP1, ANKRD44, LOC101927596, ANKRD44-IT1, SF3B1, COQ10B, HSPD1, SNORA105B, SNORA105A, HSPE1, HSPE1-MOB4, MOB4, RFTN2, MARS2, BOLL, PLCL1, LINC01923, SATB2, SATB2-AS1, LINC01877, FTCDNL1, C2orf69, TYW5, MAIP1, SPATS2L, KCTD18, SGO2, AOX1, AOX3P-AOX2P, LINC01792, LOC101927795, BZW1, CLK1, PPIL3, NIF3L1, ORC2, FAM126B, NDUFB3, CFLAR, CFLAR-AS1, CASP10, CASP8, ALS2CR12, TRAK2, STRADB, C2CD6, TMEM237, MPP4, ALS2, CDK15, FZD7, KIAA2012, LOC729224, SUMO1, NOP58, SNORD70, SNORD70B, SNORD11B, SNORD11, BMPR2, FAM117B, ICA1L, WDR12, CARF, NBEAL1, CYP20A1, ABI2, RAPH1, CD28, CTLA4, ICOS, PARD3B, NRP2, INO80D, GCSHP3, NDUFS1, EEF1B2, SNORD51, SNORA41, GPR1, GPR1-AS, ZDBF2, ADAM23, FAM237A, DYTN, MDH1B, FASTKD2, MIR3130-1, MIR3130-2, CPO, KLF7, MIR2355, MIR7845, LOC101927865, MYOSLID, LINC01802, MIR1302-4, CREB1, METTL21A, LINC01857, CCNYL1, MIR4775, FZD5, PLEKHM3, LOC100507443, CRYGD, CRYGC, CRYGB, CRYGA, C2orf80, IDH1, IDH1-AS1, PIKFYVE, PTH2R, LOC101927960, MAP2, UNC80, RPE, KANSL1L, LOC101928020, ACADL, MYL1, LANCL1-AS1, LANCL1, CPS1, CPS1-IT1, ERBB4, MIR548F2, LINC01878, MIR4776-1, MIR4776-2, IKZF2, LINC01953, LOC100130451, SPAG16, MIR4438, VWC2L, VWC2L-IT1, BARD1, LOC101928103, SNORA70I, ABCA12, ATIC, FN1, LOC102724849, LINC00607, LINC01614, MREG, PECR, TMEM169, XRCC5, LINC01963, MARCH4, SMARCAL1, RPL37A, LINC01280, IGFBP2, IGFBP5, TNP1, LOC105373876, LINC01921, DIRC3-AS1, DIRC3, TNS1, SNORA115, MIR6809, LOC105373878, RUFY4, CXCR2P1, CXCR2, CXCR1, ARPC2, GPBAR1, AAMP, PNKD, TMBIM1, MIR6513, CATIP-AS2, MIR6810, CATIP, CATIP-AS1, SLC11A1, CTDSP1, MIR26B, VIL1, USP37, CNOT9, PLCD4, ZNF142, BCS1L, RNF25, STK36, TTLL4, CYP27A1, PRKAG3, MIR9500, WNT6, WNT10A, LINC01494, CDK5R2, LINC00608, FEV, CRYBA2, MIR375, LOC100129175, CFAP65, IHH, MIR3131, NHEJ1, SLC23A3, CNPPD1, RETREG2, ZFAND2B, ABCB6, ATG9A, ANKZF1, GLB1L, STK16, TUBA4A, TUBA4B, DNAJB2, PTPRN, MIR153-1, RESP18, DNPEP, DES, SPEG, LOC100996693, GMPPA, ASIC4, CHPF, TMEM198, MIR3132, OBSL1, INHA, STK11IP, SLC4A3, LINC01803, MIR4268, EPHA4, PAX3, CCDC140, LOC440934, SGPP2, FARSB, MOGAT1, ACSL3, KCNE4, SCG2, AP1S3, WDFY1, MRPL44, SERPINE2, FAM124B, CUL3, DOCK10, MIR4439, NYAP2, LOC646736, MIR5702, IRS1, RHBDD1, COL4A4, COL4A3, LOC654841, MFF, TM4SF20, MIR5703, AGFG1, C2orf83, LOC729968, SLC19A3, CCL20, DAW1, SPHKAP, LINC01807, PID1, DNER, TRIP12, FBXO36, SLC16A14, SP110, SP140, SP140L, SP100, LINC01907, CAB39, ITM2C, LOC151484, GPR55, SPATA3-AS1, SPATA3, C2orf72, PSMD1, HTR2B, ARMC9, MIR4777, B3GNT7, NCL, SNORA75, SNORD20, SNORD82, LINC00471, NMUR1, TEX44, PTMA, MIR1244-1, MIR1244-3, MIR1244-2, MIR1244-4, PDE6D, COPS7B, MIR1471, NPPC, DIS3L2, ALPP, ECEL1P2, ALPG, ALPI, ECEL1, PRSS56, CHRND, CHRNG, TIGD1, MIR5001, EIF4E2, EFHD1, GIGYF2, KCNJ13, SNORC, NGEF, LOC101928881, NEU2, INPP5D, ATG16L1, SCARNA5, SCARNA6, SAG, DGKD, USP40, UGT1A8, UGT1A10, UGT1A9, UGT1A7, UGT1A6, UGT1A5, UGT1A4, UGT1A3, DNAJB3, LOC100286922, UGT1A1, MROH2A, HJURP, MSL3P1, TRPM8, SPP2, LINC01891, ARL4C, LINC01173, SH3BP4, AGAP1, AGAP1-IT1, TNRC17, GBX2, ASB18, IQCA1, ACKR3, LOC93463, COPS8, COL6A3, MLPH, MIR6811, PRLH, RAB17, LRRFIP1, RBM44, RAMP1, UBE2F, UBE2F-SCLY, SCLY, ESPNL, KLHL30, ERFE, ILKAP, LOC151174, LOC643387, HES6, PER2, TRAF3IP1, ASB1, LINC01107, TWIST2, LINC01940, HDAC4, MIR4440, MIR4441, MGC16025, MIR4269, MIR2467, LOC101928111, LOC150935, NDUFA10, MIR4786, OR6B2, OR6B3, COPS9, OTOS, GPC1, LOC100130449, MIR149, ANKMY1, DUSP28, RNPEPL1, CAPN10-DT, CAPN10, GPR35, AQP12B, LOC285191, AQP12A, KIF1A, AGXT, C2orf54, CROCC2, LOC200772, SNED1, MTERF4, PASK, PPP1R7, ANO7, HDLBP, SEPT2, FARP2, MIR3133, STK25, BOK-AS1, BOK, THAP4, ATG4B, DTYMK, ING5, D2HGDH, GAL3ST2, NEU4, PDCD1, RTP5, LINC01237, LOC285095, LINC01238, LOC285097, LINC01880, LINC01881	337	EVX2 (142991), HOXD13 (142989), HOXD12 (142988), HOXD11 (142986), HOXD10 (142984), HOXD9 (142982), HOXD8 (142985), MIR10B (611576), HOXD4 (142981), HOXD3 (142980), HOXD1 (142987), MTX2 (608555), HNRNPA3 (605372), NFE2L2 (600492), AGPS (603051), PDE11A (604961), RBM45 (608888), OSBPL6 (606734), PRKRA (603424), PJVK (610219), FKBP7 (607062), PLEKHA3 (607774), TTN (188840), CCDC141 (616031), ZNF385B (612344), MIR1258 (614488), CWC22 (615186), SCHLAP1 (615568), UBE2E3 (604151), ITGA4 (192975), CERKL (608381), NEUROD1 (601724), ITPRID2 (118990), PPP1R1C (613240), PDE1A (171890), DNAJC10 (607987), FRZB (605083), NCKAP1 (604891), DUSP19 (611437), NUP35 (608140), ZNF804A (612282), FSIP2 (615796), ITGAV (193210), CALCRL (114190), TFPI (152310), GULP1 (608165), DIRC1 (606423), COL3A1 (120180), COL5A2 (120190), SLC40A1 (604653), ANKAR (609803), ORMDL1 (610073), PMS1 (600258), MSTN (601788), C2orf88 (615117), HIBCH (610690), INPP1 (147263), MFSD6 (613476), NEMP2 (616497), NAB1 (600800), GLS (138280), STAT1 (600555), STAT4 (600558), MYO1B (606537), NABP1 (612103), CAVIN2 (606728), TMEFF2 (605734), PCGEM1 (605443), SLC39A10 (608733), DNAH7 (610061), STK17B (604727), HECW2 (617245), GTF3C3 (604888), PGAP1 (611655), SF3B1 (605590), HSPD1 (118190), HSPE1 (600141), MOB4 (609361), MARS2 (609728), BOLL (606165), PLCL1 (600597), SATB2 (608148), FTCDNL1 (614308), MAIP1 (617267), SPATS2L (613817), SGO2 (612425), AOX1 (602841), CLK1 (601951), PPIL3 (615811), NIF3L1 (605778), ORC2 (601182), NDUFB3 (603839), CFLAR (603599), CASP10 (601762), CASP8 (601763), TRAK2 (607334), STRADB (607333), TMEM237 (614423), MPP4 (606575), ALS2 (606352), CDK15 (616147), FZD7 (603410), SUMO1 (601912), NOP58 (616742), BMPR2 (600799), WDR12 (616620), CARF (607586), NBEAL1 (609816), ABI2 (606442), RAPH1 (609035), CD28 (186760), CTLA4 (123890), ICOS (604558), NRP2 (602070), NDUFS1 (157655), EEF1B2 (600655), GPR1 (600239), GPR1-AS (617636), ZDBF2 (617059), ADAM23 (603710), FASTKD2 (612322), CPO (609563), KLF7 (604865), CREB1 (123810), METTL21A (615257), FZD5 (601723), CRYGD (123690), CRYGC (123680), CRYGB (123670), CRYGA (123660), C2orf80 (615536), IDH1 (147700), PIKFYVE (609414), PTH2R (601469), MAP2 (157130), UNC80 (612636), RPE (180480), KANSL1L (613833), ACADL (609576), MYL1 (160780), LANCL1 (604155), CPS1 (608307), ERBB4 (600543), IKZF2 (606234), SPAG16 (612173), BARD1 (601593), ABCA12 (607800), ATIC (601731), FN1 (135600), MREG (609207), PECR (605843), XRCC5 (194364), MARCH4 (608208), SMARCAL1 (606622), RPL37A (613314), IGFBP2 (146731), IGFBP5 (146734), TNP1 (190231), DIRC3 (608262), TNS1 (600076), CXCR2 (146928), CXCR1 (146929), ARPC2 (604224), GPBAR1 (610147), AAMP (603488), PNKD (609023), TMBIM1 (610364), SLC11A1 (600266), CTDSP1 (605323), MIR26B (612152), VIL1 (193040), CNOT9 (612054), PLCD4 (605939), ZNF142 (604083), BCS1L (603647), RNF25 (616014), STK36 (607652), CYP27A1 (606530), PRKAG3 (604976), WNT6 (604663), WNT10A (606268), CDK5R2 (603764), FEV (607150), CRYBA2 (600836), MIR375 (611173), CFAP65 (614270), IHH (600726), NHEJ1 (611290), ZFAND2B (613474), ABCB6 (605452), ATG9A (612204), ANKZF1 (617541), STK16 (604719), TUBA4A (191110), DNAJB2 (604139), PTPRN (601773), RESP18 (612721), DNPEP (611367), DES (125660), SPEG (615950), GMPPA (615495), ASIC4 (606715), CHPF (610405), OBSL1 (610991), INHA (147380), STK11IP (607172), SLC4A3 (106195), EPHA4 (602188), PAX3 (606597), SGPP2 (612827), FARSB (609690), MOGAT1 (610268), ACSL3 (602371), KCNE4 (607775), SCG2 (118930), AP1S3 (615781), MRPL44 (611849), SERPINE2 (177010), CUL3 (603136), DOCK10 (611518), NYAP2 (615478), IRS1 (147545), RHBDD1 (617515), COL4A4 (120131), COL4A3 (120070), MFF (614785), TM4SF20 (615404), AGFG1 (600862), SLC19A3 (606152), CCL20 (601960), SPHKAP (611646), PID1 (612930), DNER (607299), TRIP12 (604506), FBXO36 (609105), SP110 (604457), SP140 (608602), SP140L (617747), SP100 (604585), CAB39 (612174), ITM2C (609554), GPR55 (604107), PSMD1 (617842), HTR2B (601122), ARMC9 (617612), B3GNT7 (615313), NCL (164035), SNORD20 (604012), SNORD82 (611133), NMUR1 (604153), PTMA (188390), PDE6D (602676), COPS7B (616010), NPPC (600296), DIS3L2 (614184), ALPP (171800), ALPG (171810), ALPI (171740), ECEL1 (605896), PRSS56 (613858), CHRND (100720), CHRNG (100730), TIGD1 (612972), EIF4E2 (605895), EFHD1 (611617), GIGYF2 (612003), KCNJ13 (603208), NGEF (605991), NEU2 (605528), INPP5D (601582), ATG16L1 (610767), SCARNA5 (615640), SCARNA6 (615641), SAG (181031), DGKD (601826), USP40 (610570), UGT1A8 (606433), UGT1A10 (606435), UGT1A9 (606434), UGT1A7 (606432), UGT1A6 (606431), UGT1A5 (606430), UGT1A4 (606429), UGT1A3 (606428), UGT1A1 (191740), HJURP (612667), TRPM8 (606678), SPP2 (602637), ARL4C (604787), SH3BP4 (605611), AGAP1 (608651), GBX2 (601135), ACKR3 (610376), COPS8 (616011), COL6A3 (120250), MLPH (606526), PRLH (602663), RAB17 (602206), LRRFIP1 (603256), RAMP1 (605153), UBE2F (617700), SCLY (611056), ERFE (615099), HES6 (610331), PER2 (603426), TRAF3IP1 (607380), ASB1 (605758), TWIST2 (607556), HDAC4 (605314), NDUFA10 (603835), OTOS (607877), GPC1 (600395), MIR149 (615209), RNPEPL1 (605287), CAPN10 (605286), GPR35 (602646), AQP12A (609789), KIF1A (601255), AGXT (604285), SNED1 (616634), MTERF4 (615393), PASK (607505), PPP1R7 (602877), ANO7 (605096), HDLBP (142695), SEPT2 (601506), FARP2 (617586), STK25 (602255), BOK (605404), THAP4 (612533), ATG4B (611338), DTYMK (188345), ING5 (608525), D2HGDH (609186), GAL3ST2 (608237), NEU4 (608527), PDCD1 (600244)	CytoRegions Not Set				false	arr[hg19] 2q31.1q37.3(176,945,666-243,052,331)x2-3	chr2:176945666-243052331
LST.OSCHP	2.33	Gain	2	p25.3	123195.555	8832	939	FAM110C, SH3YL1, ACP1, ALKAL2, LINC01865, LINC01874, LINC01875, LOC105373352, TMEM18, LINC01115, LINC01939, LOC101060391, SNTG2, TPO, PXDN, MYT1L, MYT1L-AS1, LINC01250, EIPR1, TRAPPC12, ADI1, RNASEH1, RNASEH1-AS1, RPS7, COLEC11, ALLC, DCDC2C, LINC01304, LOC105373394, LINC01249, LINC01248, SOX11, LINC01810, LINC01105, MIR7158, LOC400940, LINC01247, LINC01246, MIR7515HG, MIR7515, LINC00487, NRIR, CMPK2, RSAD2, RNF144A-AS1, RNF144A, LOC101929452, LOC100506274, LOC101929551, LINC00298, LINC00299, LINC01814, ID2-AS1, ID2, KIDINS220, MBOAT2, ASAP2, ITGB1BP1, CPSF3, IAH1, ADAM17, YWHAQ, TAF1B, GRHL1, LOC101929882, KLF11, CYS1, RRM2, C2orf48, MIR4261, HPCAL1, ODC1, SNORA80B, LOC101929715, NOL10, RN7SL832P, ATP6V1C2, PDIA6, LINC01954, KCNF1, FLJ33534, C2orf50, PQLC3, ROCK2, LINC00570, E2F6, GREB1, MIR4429, NTSR2, LPIN1, MIR548S, MIR4262, MIR3681HG, MIR3681, TRIB2, MIR3125, LOC100506474, LINC00276, FAM84A, NBAS, DDX1, LINC01804, MYCNUT, MYCNOS, MYCN, GACAT3, FAM49A, RAD51AP2, VSNL1, SMC6, GEN1, MSGN1, KCNS3, RDH14, NT5C1B-RDH14, NT5C1B, LINC01376, MIR4757, OSR1, LINC00954, TTC32, WDR35, LOC101928222, MATN3, LAPTM4A, SDC1, PUM2, RHOB, HS1BP3-IT1, HS1BP3, GDF7, LDAH, APOB, TDRD15, LINC01822, LINC01884, KLHL29, ATAD2B, UBXN2A, MFSD2B, WDCP, FKBP1B, SF3B6, FAM228B, TP53I3, PFN4, FAM228A, ITSN2, NCOA1, PTRHD1, CENPO, ADCY3, DNAJC27, DNAJC27-AS1, EFR3B, POMC, LINC01381, DNMT3A, MIR1301, DTNB, ASXL2, KIF3C, RAB10, GAREM2, HADHA, HADHB, ADGRF3, SELENOI, DRC1, OTOF, C2orf70, CIB4, KCNK3, SLC35F6, CENPA, DPYSL5, MAPRE3, LOC100129724, TMEM214, AGBL5-AS1, AGBL5, OST4, EMILIN1, KHK, CGREF1, ABHD1, PREB, PRR30, TCF23, SLC5A6, ATRAID, CAD, SLC30A3, DNAJC5G, TRIM54, UCN, MPV17, GTF3C2, GTF3C2-AS1, EIF2B4, SNX17, ZNF513, PPM1G, FTH1P3, NRBP1, KRTCAP3, IFT172, FNDC4, GCKR, C2orf16, ZNF512, CCDC121, GPN1, SUPT7L, SLC4A1AP, LINC01460, MRPL33, RBKS, BABAM2, BRE-AS1, MIR4263, LOC100505736, LOC100505716, FLJ31356, FOSL2, PLB1, LOC100505774, PPP1CB, SPDYA, TRMT61B, WDR43, SNORD92, SNORD53, SNORD53B, TOGARAM2, PCARE, CLIP4, ALK, LOC105374389, YPEL5, SNORA10B, LBH, LINC01936, LCLAT1, CAPN13, GALNT14, CAPN14, EHD3, XDH, SRD5A2, LINC01946, MEMO1, DPY30, SPAST, SLC30A6, NLRC4, YIPF4, BIRC6, MIR558, BIRC6-AS2, TTC27, MIR4765, LINC00486, LTBP1, MIR4430, RASGRP3, LOC105374454, FAM98A, LINC01317, MYADML, LINC01318, LINC01320, MIR548AD, LOC100288911, CRIM1, FEZ2, VIT, STRN, HEATR5B, GPATCH11, EIF2AK2, SULT6B1, CEBPZOS, CEBPZ, NDUFAF7, PRKD3, QPCT, CDC42EP3, LINC00211, RMDN2, RMDN2-AS1, CYP1B1, CYP1B1-AS1, ATL2, LINC01883, LOC101929596, HNRNPLL, GALM, SRSF7, GEMIN6, DHX57, MORN2, ARHGEF33, LOC375196, SOS1, CDKL4, MAP4K3, LOC728730, TMEM178A, THUMPD2, SLC8A1-AS1, SLC8A1, LINC01913, LINC01914, C2orf91, PKDCC, LOC102723824, EML4, COX7A2L, KCNG3, MTA3, OXER1, HAAO, LINC01819, LINC02580, ZFP36L2, LINC01126, THADA, PLEKHH2, C1GALT1C1L, DYNC2LI1, ABCG5, ABCG8, LRPPRC, PPM1B, SLC3A1, PREPL, CAMKMT, LINC01833, SIX3-AS1, SIX3, SIX2, LINC01121, SRBD1, PRKCE, EPAS1, LINC01820, LINC02583, TMEM247, ATP6V1E2, RHOQ, LOC100506142, PIGF, CRIPT, SOCS5, LINC01118, LINC01119, MCFD2, TTC7A, STPG4, CALM2, LOC101927043, EPCAM, MIR559, MSH2, KCNK12, HCG2040054, MSH6, FBXO11, FOXN2, PPP1R21, STON1-GTF2A1L, STON1, GTF2A1L, LHCGR, FSHR, MIR548BA, NRXN1, MIR8485, LOC730100, LINC01867, MIR4431, ASB3, GPR75-ASB3, CHAC2, ERLEC1, MIR3682, GPR75, PSME4, ACYP2, TSPYL6, C2orf73, SPTBN1, RPL23AP32, EML6, RTN4, CLHC1, RPS27A, MIR4426, MTIF2, PRORSD1P, CCDC88A, CFAP36, PPP4R3B, PNPT1, EFEMP1, MIR217HG, MIR217, MIR216A, MIR216B, LINC01813, LOC100129434, CCDC85A, VRK2, FANCL, LINC01795, LINC01122, LINC01793, MIR4432HG, MIR4432, BCL11A, PAPOLG, LINC01185, REL, PUS10, PEX13, KIAA1841, LOC339803, C2orf74, AHSA2P, USP34, SNORA70B, XPO1, FAM161A, CCT4, COMMD1, B3GNT2, MIR5192, TMEM17, EHBP1, LOC100132215, OTX1, DBIL5P2, WDPCP, MDH1, UGP2, VPS54, PELI1, LINC00309, LOC100507006, MIR4433B, MIR4433A, LGALSL, LINC01805, LOC101927402, AFTPH, MIR4434, LINC02579, SERTAD2, LINC01800, LINC02245, SLC1A4, CEP68, RAB1A, ACTR2, SPRED2, MIR4778, LINC01873, MEIS1-AS3, MEIS1, MEIS1-AS2, LINC01798, LINC01797, LINC01799, LINC01628, LINC01828, LINC01829, LOC101927661, ETAA1, LINC01812, C1D, WDR92, PNO1, PPP3R1, CNRIP1, PLEK, FBXO48, APLF, PROKR1, ARHGAP25, BMP10, GKN2, GKN1, ANTXR1, MIR3126, GFPT1, NFU1, AAK1, SNORA36C, ANXA4, GMCL1, SNRNP27, MXD1, ASPRV1, PCBP1-AS1, PCBP1, LINC01816, C2orf42, TIA1, PCYOX1, SNRPG, FAM136A, TGFA, TGFA-IT1, ADD2, FIGLA, CLEC4F, CD207, LINC01143, VAX2, ATP6V1B1, ATP6V1B1-AS1, ANKRD53, TEX261, OR7E91P, NAGK, MCEE, MPHOSPH10, PAIP2B, ZNF638, DYSF, CYP26B1, EXOC6B, SPR, EMX1, SFXN5, RAB11FIP5, NOTO, SMYD5, PRADC1, CCT7, FBXO41, EGR4, ALMS1, ALMS1-IT1, NAT8, ALMS1P1, NAT8B, TPRKB, DUSP11, C2orf78, STAMBP, ACTG2, DGUOK, DGUOK-AS1, TET3, BOLA3, BOLA3-AS1, MOB1A, MTHFD2, SLC4A5, DCTN1, DCTN1-AS1, C2orf81, WDR54, RTKN, INO80B, INO80B-WBP1, WBP1, MOGS, MRPL53, CCDC142, TTC31, LBX2, LBX2-AS1, PCGF1, TLX2, DQX1, AUP1, HTRA2, LOXL3, DOK1, M1AP, SEMA4F, HK2, LINC01291, POLE4, TACR1, MIR5000, EVA1A, LOC101927884, MRPL19, GCFC2, LRRTM4, LOC101927907, LOC101927967, LINC01851, SNAR-H, LOC101927948, LOC105374820, REG3G, REG1B, REG1A, REG1CP, REG3A, LOC101927987, CTNNA2, MIR4264, MIR8080, LRRTM1, LINC01815, DHFRP3, LINC01809, FUNDC2P2, SUCLG1, DNAH6, TRABD2A, TMSB10, KCMF1, LINC01964, TCF7L1, TCF7L1-IT1, LOC102724579, TGOLN2, RETSAT, ELMOD3, CAPG, SH2D6, PARTICL, MAT2A, GGCX, VAMP8, VAMP5, RNF181, TMEM150A, USP39, C2orf68, SFTPB, GNLY, ATOH8, MIR6071, LOC284950, ST3GAL5, ST3GAL5-AS1, POLR1A, PTCD3, SNORD94, IMMT, MIR4779, MRPL35, REEP1, KDM3A, CHMP3, RNF103-CHMP3, RNF103, RMND5A, CD8A, CD8B, ANAPC1P1, RGPD2, RGPD1, PLGLB1, PLGLB2, LOC285074, MIR4771-1, MIR4771-2, CYTOR, MIR4435-1, MIR4435-2, KRCC1, SMYD1, MIR4780, FABP1, THNSL2, FOXI3, TEX37, LOC101928371, EIF2AK3, LOC101928403, RPIA, ANKRD36BP2, MIR4436A, LSP1P4, LOC101927050, GGT8P, ACTR3BP2, FAM95A, ANKRD20A8P, LOC442028, TEKT4, MAL, MRPS5, ZNF514, ZNF2, PROM2, KCNIP3, FAHD2A, TRIM43B, TRIM43, LINC00342, ANKRD36C, FAHD2CP, GPAT2, ADRA2B, ASTL, DUSP2, STARD7, STARD7-AS1, SNORA112, TMEM127, CIAO1, SNRNP200, ITPRIPL1, NCAPH, NEURL3, LOC105373496, ARID5A, KANSL3, FER1L5, LMAN2L, CNNM4, MIR3127, CNNM3-DT, CNNM3, ANKRD23, ANKRD39, SEMA4C, FAM178B, LOC101927053, FAHD2B, ANKRD36, LOC100506076, LOC100506123, ANKRD36B, COX5B, ACTR1B, C2orf92, ZAP70, TMEM131, VWA3B, CNGA3, INPP4A, COA5, UNC50, MGAT4A, LOC101927070, KIAA1211L, TSGA10, C2orf15, LIPT1, MITD1, MRPL30, LYG2, LYG1, TXNDC9, EIF5B, REV1, AFF3, LINC01104, LONRF2, CHST10, NMS, PDCL3, LINC01849, NPAS2, LOC101927142, RPL31, TBC1D8, TBC1D8-AS1, CNOT11, SNORD89, RNF149, MIR5696, CREG2, RFX8, MAP4K4, LINC01127, IL1R2, IL1R1, IL1RL2, IL1RL1, IL18R1, IL18RAP, MIR4772, SLC9A4, SLC9A2, MFSD9, TMEM182, LINC01796, LINC01935, LOC100287010, LINC01831, LINC01102, LINC01103, LINC01114, LINC01158, POU3F3, LINC01159, LOC102724691, MRPS9, UTAT33, LINC01918, GPR45, TGFBRAP1, C2orf49, FHL2, LOC285000, NCK2, C2orf40, UXS1, PLGLA, RGPD3, CD8B2, ST6GAL2, MIR548AU, LINC01886, GACAT1, RGPD4-AS1, RGPD4, SLC5A7, LINC01593, LINC01594, SULT1C3, SULT1C2, SULT1C2P1, SULT1C4, GCC2, GCC2-AS1, LIMS1, LIMS1-AS1, RANBP2, CCDC138, EDAR, SH3RF3-AS1, SH3RF3, MIR4265, MIR4266, SEPT10, SOWAHC, RGPD5, RGPD6, LIMS3, LIMS4, LIMS3-LOC440895, LOC440895, LOC100288570, LINC01123, MIR4267, MALL, MIR4436B2, MIR4436B1, NPHP1, MTLN, LOC100507334, LINC01106, LOC105373553, BUB1, SNORD132, ACOXL, ACOXL-AS1, BCL2L11, MIR4435-2HG, ANAPC1, MERTK, TMEM87B, FBLN7, ZC3H8, ZC3H6, RGPD8, TTL, LOC105373562, POLR1B, CHCHD5, FLJ42351, SLC20A1, NT5DC4, CKAP2L, IL1A, IL1B, IL37, IL36G, IL36A, IL36B, IL36RN, IL1F10, IL1RN, PSD4, PAX8, PAX8-AS1, CBWD2, FOXD4L1, PGM5P3-AS1, PGM5P4-AS1, PGM5P4, FAM138B, MIR1302-3, WASH2P, DDX11L2, RPL23AP7, RABL2A, SLC35F5, MIR4782, LOC101060091, ACTR3, LINC01191, LOC100499194, DPP10, DPP10-AS3, DPP10-AS1, DDX18, CCDC93, INSIG2, LOC100506797, LOC101927709, EN1, MARCO, C1QL2, STEAP3, STEAP3-AS1, C2orf76, DBI, TMEM37, SCTR, LOC107105282, CFAP221, TMEM177, PTPN4, EPB41L5, TMEM185B, RALB, INHBB, LINC01101, GLI2, TFCP2L1, CLASP1, RNU4ATAC, NIFK-AS1, NIFK, TSN	505	FAM110C (611395), SH3YL1 (617314), ACP1 (171500), TMEM18 (613220), SNTG2 (608715), TPO (606765), PXDN (605158), MYT1L (613084), EIPR1 (608998), TRAPPC12 (614139), ADI1 (613400), RNASEH1 (604123), RPS7 (603658), COLEC11 (612502), SOX11 (600898), CMPK2 (611787), RSAD2 (607810), ID2 (600386), KIDINS220 (615759), MBOAT2 (611949), ASAP2 (603817), ITGB1BP1 (607153), CPSF3 (606029), ADAM17 (603639), YWHAQ (609009), TAF1B (604904), GRHL1 (609786), KLF11 (603301), RRM2 (180390), HPCAL1 (600207), ODC1 (165640), NOL10 (616197), PDIA6 (611099), KCNF1 (603787), ROCK2 (604002), E2F6 (602944), GREB1 (611736), NTSR2 (605538), LPIN1 (605518), TRIB2 (609462), FAM84A (611234), NBAS (608025), DDX1 (601257), MYCNUT (615968), MYCNOS (605374), MYCN (164840), GACAT3 (616132), VSNL1 (600817), SMC6 (609387), GEN1 (612449), MSGN1 (612209), KCNS3 (603888), RDH14 (616796), NT5C1B (610526), OSR1 (608891), WDR35 (613602), MATN3 (602109), SDC1 (186355), PUM2 (607205), RHOB (165370), HS1BP3 (609359), GDF7 (604651), LDAH (613570), APOB (107730), ATAD2B (615347), MFSD2B (617845), WDCP (616234), FKBP1B (600620), SF3B6 (607835), TP53I3 (605171), ITSN2 (604464), NCOA1 (602691), PTRHD1 (617342), CENPO (611504), ADCY3 (600291), DNAJC27 (613527), EFR3B (616797), POMC (176830), DNMT3A (602769), DTNB (602415), ASXL2 (612991), KIF3C (602845), RAB10 (612672), GAREM2 (617999), HADHA (600890), HADHB (143450), SELENOI (607915), DRC1 (615288), OTOF (603681), CIB4 (610646), KCNK3 (603220), CENPA (117139), DPYSL5 (608383), MAPRE3 (605788), TMEM214 (615301), AGBL5 (615900), EMILIN1 (130660), KHK (614058), CGREF1 (606137), ABHD1 (612195), PREB (606395), TCF23 (609635), SLC5A6 (604024), CAD (114010), SLC30A3 (602878), DNAJC5G (613946), TRIM54 (606474), UCN (600945), MPV17 (137960), GTF3C2 (604883), EIF2B4 (606687), SNX17 (605963), ZNF513 (613598), PPM1G (605119), NRBP1 (606010), IFT172 (607386), FNDC4 (611905), GCKR (600842), GPN1 (611479), SUPT7L (612762), SLC4A1AP (602655), MRPL33 (610059), RBKS (611132), BABAM2 (610497), FOSL2 (601575), PLB1 (610179), PPP1CB (600590), SPDYA (614029), WDR43 (616195), PCARE (613425), ALK (105590), YPEL5 (609726), LBH (611763), LCLAT1 (614241), CAPN13 (610228), GALNT14 (608225), CAPN14 (610229), EHD3 (605891), XDH (607633), SRD5A2 (607306), MEMO1 (611786), DPY30 (612032), SPAST (604277), SLC30A6 (611148), NLRC4 (606831), YIPF4 (617534), BIRC6 (605638), MIR558 (616473), LTBP1 (150390), RASGRP3 (609531), CRIM1 (606189), FEZ2 (604826), VIT (617693), STRN (614765), EIF2AK2 (176871), SULT6B1 (617152), CEBPZ (612828), NDUFAF7 (615898), PRKD3 (607077), QPCT (607065), CDC42EP3 (606133), RMDN2 (611872), CYP1B1 (601771), ATL2 (609368), HNRNPLL (611208), GALM (137030), SRSF7 (600572), GEMIN6 (607006), SOS1 (182530), MAP4K3 (604921), THUMPD2 (611751), SLC8A1 (182305), PKDCC (614150), EML4 (607442), COX7A2L (605771), KCNG3 (606767), MTA3 (609050), HAAO (604521), ZFP36L2 (612053), THADA (611800), PLEKHH2 (612723), DYNC2LI1 (617083), ABCG5 (605459), ABCG8 (605460), LRPPRC (607544), PPM1B (603770), SLC3A1 (104614), PREPL (609557), CAMKMT (609559), SIX3 (603714), SIX2 (604994), PRKCE (176975), EPAS1 (603349), ATP6V1E2 (617385), RHOQ (605857), PIGF (600153), CRIPT (604594), SOCS5 (607094), MCFD2 (607788), TTC7A (609332), CALM2 (114182), EPCAM (185535), MSH2 (609309), KCNK12 (607366), MSH6 (600678), FBXO11 (607871), FOXN2 (143089), STON1 (605357), GTF2A1L (605358), LHCGR (152790), FSHR (136435), NRXN1 (600565), ASB3 (605760), CHAC2 (617446), ERLEC1 (611229), GPR75 (606704), PSME4 (607705), ACYP2 (102595), SPTBN1 (182790), RTN4 (604475), RPS27A (191343), MTIF2 (603766), CCDC88A (609736), PPP4R3B (610352), PNPT1 (610316), EFEMP1 (601548), MIR217 (615096), MIR216A (610944), VRK2 (602169), FANCL (608111), BCL11A (606557), PAPOLG (616865), REL (164910), PUS10 (612787), PEX13 (601789), USP34 (615295), XPO1 (602559), FAM161A (613596), CCT4 (605142), COMMD1 (607238), B3GNT2 (605581), TMEM17 (614950), EHBP1 (609922), OTX1 (600036), WDPCP (613580), MDH1 (154200), UGP2 (191760), VPS54 (614633), PELI1 (614797), LGALSL (617902), SERTAD2 (617851), SLC1A4 (600229), CEP68 (616889), RAB1A (179508), ACTR2 (604221), SPRED2 (609292), MEIS1 (601739), ETAA1 (613196), C1D (606997), WDR92 (610729), PPP3R1 (601302), PLEK (173570), APLF (611035), PROKR1 (607122), ARHGAP25 (610587), BMP10 (608748), GKN1 (606402), ANTXR1 (606410), GFPT1 (138292), NFU1 (608100), AAK1 (616405), ANXA4 (106491), MXD1 (600021), ASPRV1 (611765), PCBP1 (601209), TIA1 (603518), PCYOX1 (610995), SNRPG (603542), FAM136A (616275), TGFA (190170), ADD2 (102681), FIGLA (608697), CD207 (604862), VAX2 (604295), ATP6V1B1 (192132), ANKRD53 (617009), NAGK (606828), MCEE (608419), MPHOSPH10 (605503), PAIP2B (611018), ZNF638 (614349), DYSF (603009), CYP26B1 (605207), EXOC6B (607880), SPR (182125), EMX1 (600034), SFXN5 (615572), RAB11FIP5 (605536), CCT7 (605140), FBXO41 (609108), EGR4 (128992), ALMS1 (606844), NAT8 (606716), NAT8B (608190), TPRKB (608680), DUSP11 (603092), STAMBP (606247), ACTG2 (102545), DGUOK (601465), TET3 (613555), BOLA3 (613183), MOB1A (609281), MTHFD2 (604887), SLC4A5 (606757), DCTN1 (601143), RTKN (602288), INO80B (616456), WBP1 (606961), MOGS (601336), MRPL53 (611857), LBX2 (607164), PCGF1 (610231), TLX2 (604240), AUP1 (602434), HTRA2 (606441), LOXL3 (607163), DOK1 (602919), SEMA4F (603706), HK2 (601125), POLE4 (607269), TACR1 (162323), MRPL19 (611832), GCFC2 (189901), LRRTM4 (610870), REG3G (609933), REG1B (167771), REG1A (167770), REG3A (167805), CTNNA2 (114025), LRRTM1 (610867), SUCLG1 (611224), DNAH6 (603336), TRABD2A (614912), TMSB10 (188399), KCMF1 (614719), TCF7L1 (604652), TGOLN2 (603062), RETSAT (617597), ELMOD3 (615427), CAPG (153615), PARTICL (616350), MAT2A (601468), GGCX (137167), VAMP8 (603177), VAMP5 (607029), RNF181 (612490), TMEM150A (616757), USP39 (611594), SFTPB (178640), GNLY (188855), ST3GAL5 (604402), POLR1A (616404), PTCD3 (614918), IMMT (600378), MRPL35 (611841), REEP1 (609139), KDM3A (611512), CHMP3 (610052), RNF103 (602507), CD8A (186910), CD8B (186730), RGPD2 (612705), PLGLB1 (173340), RGPD1 (612704), SMYD1 (606846), FABP1 (134650), THNSL2 (611261), FOXI3 (612351), EIF2AK3 (604032), RPIA (180430), MAL (188860), MRPS5 (611972), ZNF2 (194500), PROM2 (617160), KCNIP3 (604662), GPAT2 (616431), ADRA2B (104260), ASTL (608860), DUSP2 (603068), STARD7 (616712), TMEM127 (613403), CIAO1 (604333), SNRNP200 (601664), NCAPH (602332), NEURL3 (617206), ARID5A (611583), KANSL3 (617742), LMAN2L (609552), CNNM4 (607805), CNNM3 (607804), ANKRD23 (610736), SEMA4C (604462), COX5B (123866), ACTR1B (605144), ZAP70 (176947), TMEM131 (615659), VWA3B (614884), CNGA3 (600053), INPP4A (600916), COA5 (613920), UNC50 (617826), MGAT4A (604623), TSGA10 (607166), LIPT1 (610284), MRPL30 (611838), LYG2 (616547), TXNDC9 (612564), EIF5B (606086), REV1 (606134), AFF3 (601464), CHST10 (606376), PDCL3 (611678), NPAS2 (603347), RPL31 (617415), MAP4K4 (604666), IL1R2 (147811), IL1R1 (147810), IL1RL2 (604512), IL1RL1 (601203), IL18R1 (604494), IL18RAP (604509), SLC9A4 (600531), SLC9A2 (600530), POU3F3 (602480), MRPS9 (611975), GPR45 (604838), TGFBRAP1 (606237), FHL2 (602633), NCK2 (604930), C2orf40 (611752), UXS1 (609749), PLGLA (612212), RGPD3 (612706), ST6GAL2 (608472), RGPD4 (612707), SLC5A7 (608761), SULT1C3 (617151), SULT1C2 (602385), SULT1C4 (608357), GCC2 (612711), LIMS1 (602567), RANBP2 (601181), EDAR (604095), SEPT10 (611737), RGPD6 (612709), MALL (602022), NPHP1 (607100), BUB1 (602452), BCL2L11 (603827), MIR4435-2HG (617144), ANAPC1 (608473), MERTK (604705), TMEM87B (617203), FBLN7 (611551), RGPD8 (602752), RGPD5 (612708), TTL (608291), POLR1B (602000), CHCHD5 (616978), SLC20A1 (137570), CKAP2L (616174), IL1A (147760), IL1B (147720), IL37 (605510), IL36G (605542), IL36A (605509), IL36B (605508), IL36RN (605507), IL1F10 (615296), IL1RN (147679), PSD4 (614442), PAX8 (167415), CBWD2 (611079), FOXD4L1 (611084), RABL2A (605412), ACTR3 (604222), DPP10 (608209), DDX18 (606355), INSIG2 (608660), EN1 (131290), MARCO (604870), C1QL2 (614330), STEAP3 (609671), DBI (125950), SCTR (182098), PTPN4 (176878), EPB41L5 (611730), RALB (179551), INHBB (147390), GLI2 (165230), TFCP2L1 (609785), CLASP1 (605852), RNU4ATAC (601428), NIFK (611970), TSN (600575)	CytoRegions Not Set				false	arr[hg19] 2p25.3q14.3(21,493-123,217,048)x2-3	chr2:21493-123217048
LST.OSCHP	2.33	Gain	10	p12.1	36848.978	2234	236	KIAA1217, ARHGAP21, PRTFDC1, ENKUR, THNSL1, LINC01516, GPR158-AS1, GPR158, LINC00836, LOC101929073, MYO3A, GAD2, APBB1IP, LOC101929117, FAM238A, FAM238B, PDSS1, ABI1, FAM238C, ANKRD26, YME1L1, MASTL, ACBD5, LRRC37A6P, ARMC4P1, PTCHD3, RAB18, MKX, MKX-AS1, ARMC4, MPP7, SNORD130, MIR8086, LOC105376468, WAC-AS1, WAC, BAMBI, LINC01517, LINC00837, C10orf126, LYZL1, SVIL-AS1, SVIL, MIR604, MIR938, JCAD, LOC101929279, MTPAP, GOLGA2P6, MIR7162, MAP3K8, LYZL2, SVIL2P, LOC105376480, ZNF438, LOC101929352, ZEB1-AS1, ZEB1, ARHGAP12, KIF5B, EPC1, LOC102031319, LOC101929431, CCDC7, ITGB1, SNORA86, NRP1, LINC00838, PARD3, PARD3-AS1, CUL2, MIR3611, CREM, CCNY, GJD4, FZD8, MIR4683, PCAT5, ANKRD30A, LINC00993, MTRNR2L7, ZNF248, ZNF33BP1, ZNF25, ZNF33A, ZNF37A, LOC100129055, HSD17B7P2, SEPT7P9, LINC00999, ACTR3BP5, LOC441666, CCNYL2, LINC00839, ZNF37BP, ZNF33B, LINC01518, LOC283028, LOC105378269, BMS1, LOC101929445, LINC01264, MIR5100, RET, CSGALNACT2, RASGEF1A, FXYD4, HNRNPF, SNORD3J, ZNF487, ZNF239, ZNF485, ZNF32-AS3, ZNF32, ZNF32-AS1, ZNF32-AS2, LOC102724264, HNRNPA3P1, LINC00619, LINC00840, LINC00841, C10orf142, CXCL12, TMEM72-AS1, TMEM72, RASSF4, DEPP1, C10orf25, ZNF22, RSU1P2, ANKRD30BP3, MIR3156-1, OR13A1, ALOX5, LOC102724323, MARCH8, ZFAND4, WASHC2C, FAM25E, AGAP4, PTPN20, FRMPD2B, BMS1P1, FAM35BP, LOC101927699, LOC102724593, SYT15, GPRIN2, NPY4R, NPY4R2, LINC00842, HNRNPA1P33, ANXA8, FAM25C, FAM25G, AGAP9, BMS1P2, FAM35DP, ANTXRLP1, ANTXRL, FAM25BP, ANXA8L1, CTSLP2, LOC107001062, LOC105378292, ZNF488, RBP3, GDF2, GDF10, GLUD1P2, AGAP12P, FRMPD2, MAPK8, ARHGAP22, ARHGAP22-IT1, WDFY4, LRRC18, MIR4294, VSTM4, FAM170B-AS1, FAM170B, TMEM273, C10orf71-AS1, C10orf71, DRGX, ERCC6, PGBD3, CHAT, SLC18A3, C10orf53, OGDHL, PARG, PARGP1, TIMM23B, SNORA74C-2, SNORA74C-1, AGAP7P, MSMB, NCOA4, TIMM23, AGAP6, FAM21EP, WASHC2A, ASAH2, SGMS1, SGMS1-AS1, ASAH2B, A1CF, PRKG1, LOC102724719, MIR605, CSTF2T, PRKG1-AS1, DKK1, LINC01468, LOC105378305, MBL2, PCDH15, LOC105378311, MIR548F1, MTRNR2L5, ZWINT, MIR3924, IPMK, CISD1, UBE2D1, TFAM, BICC1, FAM133CP, LINC00844, CCEPR, PHYHIPL, FAM13C, SLC16A9, MRLN, CCDC6	98	KIAA1217 (617367), ARHGAP21 (609870), PRTFDC1 (610751), ENKUR (611025), THNSL1 (611260), GPR158 (614573), MYO3A (606808), GAD2 (138275), APBB1IP (609036), PDSS1 (607429), ABI1 (603050), ANKRD26 (610855), YME1L1 (607472), MASTL (608221), ACBD5 (616618), PTCHD3 (611791), RAB18 (602207), MKX (601332), ARMC4 (615408), MPP7 (610973), WAC (615049), BAMBI (604444), SVIL (604126), JCAD (614398), MTPAP (613669), MAP3K8 (191195), LYZL2 (612748), ZEB1-AS1 (616915), ZEB1 (189909), ARHGAP12 (610577), KIF5B (602809), EPC1 (610999), ITGB1 (135630), NRP1 (602069), PARD3 (606745), CUL2 (603135), CREM (123812), CCNY (612786), GJD4 (611922), FZD8 (606146), ANKRD30A (610856), ZNF25 (194528), ZNF33A (194521), ZNF37A (616085), ZNF33B (194522), BMS1 (611448), RET (164761), CSGALNACT2 (616616), RASGEF1A (614531), FXYD4 (616926), HNRNPF (601037), ZNF239 (601069), ZNF32 (194539), CXCL12 (600835), RASSF4 (610559), DEPP1 (611309), ZNF22 (194529), ALOX5 (152390), MARCH8 (613335), WASHC2C (613631), SYT15 (608081), GPRIN2 (611240), NPY4R (601790), ANXA8 (602396), RBP3 (180290), GDF2 (605120), GDF10 (601361), PTPN20 (610630), PTPN20 (610631), FRMPD2 (613323), MAPK8 (601158), ARHGAP22 (610585), WDFY4 (613316), DRGX (606701), ERCC6 (609413), CHAT (118490), SLC18A3 (600336), OGDHL (617513), PARG (603501), MSMB (157145), NCOA4 (601984), TIMM23 (605034), ASAH2 (611202), SGMS1 (611573), PRKG1 (176894), CSTF2T (611968), DKK1 (605189), MBL2 (154545), PCDH15 (605514), ZWINT (609177), IPMK (609851), CISD1 (611932), UBE2D1 (602961), TFAM (600438), BICC1 (614295), SLC16A9 (614242), MRLN (616246), CCDC6 (601985)	CytoRegions Not Set				false	arr[hg19] 10p12.1q21.2(24,806,630-61,655,608)x2-3	chr10:24806630-61655608
LST.OSCHP	2.33	Gain	13	q11	42892.009	3474	341	LINC00417, ANKRD20A9P, LINC00408, LINC00442, LOC107984132, TUBA3C, LOC101928697, ANKRD26P3, LINC00421, TPTE2, LINC00350, MPHOSPH8, PSPC1, ZMYM5, ZMYM2, LINC01072, GJA3, GJB2, GJB6, CRYL1, MIR4499, IFT88, IL17D, EEF1AKMT1, XPO4, LINC00367, LATS2, SAP18, SKA3, MRPL57, LINC01046, MIPEPP3, LINC00539, GRK6P1, ZDHHC20, MICU2, FGF9, LINC00424, LINC00540, LINC00621, BASP1P1, SGCG, SACS, SACS-AS1, LINC00327, TNFRSF19, MIPEP, PCOTH, C1QTNF9B, ANKRD20A19P, SPATA13, MIR2276, SPATA13-AS1, C1QTNF9, LINC00566, PARP4, TPTE2P6, ATP12A, RNF17, CENPJ, TPTE2P1, PABPC3, AMER2, LINC00463, LINC01053, MTMR6, NUP58, ATP8A2, SHISA2, LINC00415, RNF6, CDK8, WASF3, GPR12, USP12, USP12-AS1, USP12-AS2, LINC00412, RPL21, RPL21P28, SNORD102, SNORA27, RASL11A, GTF3A, MTIF3, LNX2, POLR1D, GSX1, PLUT, PDX1, LINC00543, CDX2, URAD, FLT3, PAN3-AS1, PAN3, FLT1, POMP, SLC46A3, MTUS2, MTUS2-AS1, SLC7A1, LOC102723345, UBL3, LINC00297, LINC00572, LINC00544, LINC00365, LINC00384, KATNAL1, LINC00426, LINC01058, UBE2L5, HMGB1, USPL1, ALOX5AP, LINC00398, LINC00545, TEX26-AS1, MEDAG, TEX26, HSPH1, B3GLCT, RXFP2, EEF1DP3, FRY-AS1, FRY, ZAR1L, BRCA2, N4BP2L1, N4BP2L2, MINOS1P1, N4BP2L2-IT2, PDS5B, LINC00423, KL, STARD13, STARD13-AS, LINC02344, RFC3, LINC02343, LINC00457, NBEA, MAB21L1, LINC00445, DCLK1, SOHLH2, CCDC169-SOHLH2, CCDC169, SPART, SPART-AS1, CCNA1, SERTM1, RFXAP, SMAD9, ALG5, EXOSC8, SUPT20H, CSNK1A1L, LINC01048, LINC00547, POSTN, TRPC4, LINC00571, UFM1, LINC00437, LINC00366, FREM2, FREM2-AS1, STOML3, PROSER1, NHLRC3, LHFPL6, COG6, MIR4305, LINC00332, LINC00548, LINC00598, FOXO1, MIR320D1, MRPS31, SLC25A15, TPTE2P5, MIR621, SUGT1P3, ELF1, WBP4, MIR3168, KBTBD6, LOC101929140, KBTBD7, MTRF1, NAA16, OR7E37P, RGCC, VWA8, MIR5006, VWA8-AS1, DGKH, AKAP11, LINC02341, TNFSF11, FAM216B, LINC01050, LINC00428, EPSTI1, DNAJC15, LINC00400, ENOX1, ENOX1-AS2, CCDC122, LACC1, LINC00284, LINC00390, SMIM2-AS1, SMIM2, SMIM2-IT1, MIR8079, SERP2, TUSC8, TSC22D1, TSC22D1-AS1, LINC00407, LINC00330, NUFIP1, GPALPP1, LOC101929259, GTF2F2, KCTD4, TPT1, SNORA31B, SNORA31, TPT1-AS1, SLC25A30, SLC25A30-AS1, COG3, ERICH6B, LINC01055, SPERT, SIAH3, ZC3H13, CPB2-AS1, CPB2, LCP1, LRRC63, LINC00563, RUBCNL, LINC01198, LRCH1, ESD, HTR2A, HTR2A-AS1, LINC00562, SUCLA2, NUDT15, MED4, MED4-AS1, ITM2B, RB1-DT, RB1, LPAR6, RCBTB2, LINC00462, CYSLTR2, FNDC3A, MLNR, LOC105370203, CDADC1, CAB39L, SETDB2, SETDB2-PHF11, PHF11, RCBTB1, ARL11, EBPL, KPNA3, CTAGE10P, SPRYD7, DLEU2, MIR3613, TRIM13, KCNRG, MIR16-1, MIR15A, DLEU1, ST13P4, DLEU1-AS1, DLEU7, DLEU7-AS1, RNASEH2B-AS1, RNASEH2B, GUCY1B2, C13orf42, FAM124A, SERPINE3, MIR5693, INTS6, INTS6-AS1, MIR4703, WDFY2, DHRS12, TMEM272, CCDC70, ATP7B, ALG11, UTP14C, NEK5, LOC101929657, NEK3, MRPS31P5, LINC02333, THSD1, VPS36, CKAP2, TPTE2P3, HNRNPA1L2, SUGT1, CNMD, MIR759, PCDH8, OLFM4, LINC01065, LINC00558, LINC00458, MIR1297, MIR5007, PRR20D, PRR20C, PRR20B, PRR20A, PRR20E, PCDH17, LINC02338, LINC00374, DIAPH3, DIAPH3-AS1, DIAPH3-AS2, LINC00434, TDRD3, LINC00378, MIR3169	166	TUBA3C (602528), TPTE2 (606791), MPHOSPH8 (611626), PSPC1 (612408), ZMYM5 (616443), ZMYM2 (602221), GJA3 (121015), GJB2 (121011), GJB6 (604418), CRYL1 (609877), IFT88 (600595), IL17D (607587), EEF1AKMT1 (617793), XPO4 (611449), LATS2 (604861), SAP18 (602949), MRPL57 (611997), ZDHHC20 (617972), MICU2 (610632), FGF9 (600921), SGCG (608896), SACS (604490), TNFRSF19 (606122), MIPEP (602241), PCOTH (617122), C1QTNF9B (614148), SPATA13 (613324), C1QTNF9 (614285), PARP4 (607519), ATP12A (182360), RNF17 (605793), CENPJ (609279), PABPC3 (604680), AMER2 (614659), MTMR6 (603561), NUP58 (607615), ATP8A2 (605870), SHISA2 (617324), RNF6 (604242), CDK8 (603184), WASF3 (605068), GPR12 (600752), USP12 (603091), RPL21 (603636), RASL11A (612403), GTF3A (600860), LNX2 (609733), POLR1D (613715), GSX1 (616542), PDX1 (600733), CDX2 (600297), URAD (615804), FLT3 (136351), PAN3 (617448), FLT1 (165070), POMP (613386), SLC46A3 (616764), SLC7A1 (104615), UBL3 (604711), KATNAL1 (614764), HMGB1 (163905), USPL1 (617470), ALOX5AP (603700), HSPH1 (610703), B3GLCT (610308), RXFP2 (606655), FRY (614818), BRCA2 (600185), N4BP2L2 (615788), PDS5B (605333), KL (604824), STARD13 (609866), RFC3 (600405), NBEA (604889), MAB21L1 (601280), DCLK1 (604742), SOHLH2 (616066), SPART (607111), CCNA1 (604036), RFXAP (601861), SMAD9 (603295), ALG5 (604565), EXOSC8 (606019), SUPT20H (613417), POSTN (608777), TRPC4 (603651), UFM1 (610553), FREM2 (608945), STOML3 (608327), LHFPL6 (606710), COG6 (606977), FOXO1 (136533), MRPS31 (611992), SLC25A15 (603861), ELF1 (189973), WBP4 (604981), KBTBD6 (617738), KBTBD7 (617739), MTRF1 (604601), RGCC (610077), VWA8 (617509), DGKH (604071), AKAP11 (604696), TNFSF11 (602642), EPSTI1 (607441), DNAJC15 (615339), ENOX1 (610914), CCDC122 (613408), LACC1 (613409), TSC22D1 (607715), NUFIP1 (604354), GTF2F2 (189969), TPT1 (600763), SLC25A30 (610793), COG3 (606975), SIAH3 (615609), ZC3H13 (616453), CPB2 (603101), LCP1 (153430), LRCH1 (610368), ESD (133280), HTR2A (182135), SUCLA2 (603921), NUDT15 (615792), MED4 (605718), ITM2B (603904), RB1 (614041), LPAR6 (609239), RCBTB2 (603524), CYSLTR2 (605666), FNDC3A (615794), MLNR (602885), CAB39L (612175), SETDB2 (607865), PHF11 (607796), RCBTB1 (607867), ARL11 (609351), EBPL (617335), KPNA3 (601892), SPRYD7 (607866), DLEU2 (605766), TRIM13 (605661), KCNRG (607947), MIR16-1 (609704), MIR15A (609703), DLEU1 (605765), RNASEH2B (610326), GUCY1B2 (603695), INTS6 (604331), WDFY2 (610418), DHRS12 (616163), ATP7B (606882), ALG11 (613666), UTP14C (608969), NEK5 (616731), NEK3 (604044), THSD1 (616821), VPS36 (610903), CKAP2 (611569), SUGT1 (604098), CNMD (605147), PCDH8 (603580), OLFM4 (614061), PCDH17 (611760), DIAPH3 (614567), TDRD3 (614392)	CytoRegions Not Set				false	arr[hg19] 13q11q21.2(19,084,822-61,976,831)x2-3	chr13:19084822-61976831
LST.OSCHP	2.33	Gain	14	q21.3	35179.597	2767	303	LINC01599, VCPKMT, SOS2, L2HGDH, MIR4504, ATP5S, CDKL1, MAP4K5, ATL1, SAV1, NIN, LOC105370489, ABHD12B, PYGL, TRIM9, TMX1, LINC00519, LINC00640, LINC02310, FRMD6-AS2, FRMD6, FRMD6-AS1, GNG2, LOC102723604, RTRAF, NID2, PTGDR, PTGER2, TXNDC16, GPR137C, ERO1A, PSMC6, STYX, GNPNAT1, FERMT2, DDHD1, LOC101927620, MIR5580, BMP4, CDKN3, CNIH1, GMFB, CGRRF1, SAMD4A, GCH1, MIR4308, WDHD1, SOCS4, MAPK1IP1L, LGALS3, DLGAP5, FBXO34, ATG14, TBPL2, KTN1-AS1, KTN1, RPL13AP3, LINC00520, PELI2, LOC101927690, TMEM260, OTX2, OTX2-AS1, EXOC5, AP5M1, NAA30, CCDC198, SLC35F4, ARMH4, ACTR10, PSMA3, PSMA3-AS1, LINC00216, ARID4A, TOMM20L, TIMM9, KIAA0586, DACT1, LINC01500, DAAM1, GPR135, L3HYPDH, JKAMP, CCDC175, RTN1, MIR5586, LRRC9, PCNX4, DHRS7, PPM1A, LINC02322, C14orf39, SIX6, SALRNA1, SIX1, SIX4, MNAT1, TRMT5, SLC38A6, TMEM30B, PRKCH, LINC01303, FLJ22447, HIF1A-AS1, HIF1A, LOC105370526, HIF1A-AS2, SNAPC1, SYT16, LINC00643, LINC00644, KCNH5, RHOJ, GPHB5, PPP2R5E, WDR89, SGPP1, SYNE2, MIR548H1, ESR2, TEX21P, MTHFD1, ZBTB25, AKAP5, ZBTB1, LOC102723809, HSPA2, PPP1R36, PLEKHG3, SPTB, MIR7855, CHURC1, CHURC1-FNTB, GPX2, RAB15, FNTB, MAX, MIR4706, LOC100506321, LINC02324, MIR4708, FUT8, FUT8-AS1, MIR625, CCDC196, GPHN, FAM71D, MPP5, ATP6V1D, EIF2S1, PLEK2, MIR5694, TMEM229B, PLEKHH1, PIGH, ARG2, VTI1B, RDH11, RDH12, ZFYVE26, RAD51B, LOC100996664, ZFP36L1, ACTN1, ACTN1-AS1, DCAF5, EXD2, GALNT16, ERH, SLC39A9, PLEKHD1, CCDC177, SUSD6, LOC100289511, SRSF5, SLC10A1, LOC100506358, SMOC1, SNORD169, SLC8A3, LOC646548, ADAM21P1, COX16, SYNJ2BP-COX16, SYNJ2BP, ADAM21, ADAM20P1, ADAM20, MED6, LOC101928075, TTC9, LINC01269, MAP3K9, PCNX1, SIPA1L1, SNORD56B, LOC145474, RGS6, MIR7843, DPF3, DCAF4, ZFYVE1, RBM25, PSEN1, PAPLN, LOC101928123, NUMB, LOC101928143, HEATR4, RIOX1, ACOT1, ACOT2, ACOT4, ACOT6, DNAL1, PNMA1, ELMSAN1, MIR4505, LOC100506476, LINC02274, PTGR2, ZNF410, FAM161B, COQ6, ENTPD5, BBOF1, ALDH6A1, LIN52, VSX2, ABCD4, VRTN, SYNDIG1L, NPC2, MIR4709, ISCA2, LTBP2, AREL1, FCF1, YLPM1, PROX2, DLST, RPS6KL1, PGF, EIF2B2, MLH3, ACYP1, ZC2HC1C, NEK9, TMED10, FOS, LINC01220, JDP2, BATF, LOC102724153, FLVCR2, ERG28, TTLL5, TGFB3, IFT43, GPATCH2L, ESRRB, VASH1, VASH1-AS1, ANGEL1, LRRC74A, LINC01629, IRF2BPL, LINC02288, LINC02289, CIPC, ZDHHC22, TMEM63C, NGB, MIR1260A, POMT2, GSTZ1, TMED8, SAMD15, NOXRED1, VIPAS39, AHSA1, ISM2, SPTLC2, ALKBH1, SLIRP, SNW1, C14orf178, ADCK1, NRXN3, LOC105370586, DIO2, DIO2-AS1, CEP128, TSHR, GTF2A1, SNORA79, LOC101928504, STON2, LINC02308, SEL1L, LINC01467, LINC02311, LINC02301	184	VCPKMT (615260), SOS2 (601247), L2HGDH (609584), CDKL1 (603441), MAP4K5 (604923), ATL1 (606439), SAV1 (607203), NIN (608684), PYGL (613741), TRIM9 (606555), TMX1 (610527), FRMD6 (614555), GNG2 (606981), RTRAF (610858), NID2 (605399), PTGDR (604687), PTGER2 (176804), TXNDC16 (616179), ERO1A (615435), PSMC6 (602708), STYX (615814), GNPNAT1 (616510), FERMT2 (607746), DDHD1 (614603), BMP4 (112262), CDKN3 (123832), CNIH1 (611287), GMFB (601713), CGRRF1 (606138), SAMD4A (610747), GCH1 (600225), WDHD1 (608126), SOCS4 (616337), MAPK1IP1L (617226), LGALS3 (153619), DLGAP5 (617859), FBXO34 (609104), ATG14 (613515), TBPL2 (608964), KTN1 (600381), PELI2 (614798), TMEM260 (617449), OTX2 (600037), EXOC5 (604469), AP5M1 (614368), NAA30 (617989), PSMA3 (176843), ARID4A (180201), TIMM9 (607384), KIAA0586 (610178), DACT1 (607861), DAAM1 (606626), GPR135 (607970), L3HYPDH (614811), JKAMP (611176), RTN1 (600865), DHRS7 (612833), PPM1A (606108), C14orf39 (617307), SIX6 (606326), SIX1 (601205), SIX4 (606342), MNAT1 (602659), TRMT5 (611023), SLC38A6 (616518), TMEM30B (611029), PRKCH (605437), HIF1A-AS1 (614528), HIF1A (603348), HIF1A-AS2 (614529), SNAPC1 (600591), SYT16 (610950), KCNH5 (605716), RHOJ (607653), GPHB5 (609652), PPP2R5E (601647), SGPP1 (612826), SYNE2 (608442), ESR2 (601663), MTHFD1 (172460), ZBTB25 (194541), AKAP5 (604688), ZBTB1 (616578), HSPA2 (140560), PLEKHG3 (617940), SPTB (182870), CHURC1 (608577), GPX2 (138319), FNTB (134636), MAX (154950), FUT8 (602589), GPHN (603930), MPP5 (606958), ATP6V1D (609398), EIF2S1 (603907), PLEK2 (608007), PIGH (600154), ARG2 (107830), VTI1B (603207), RDH11 (607849), RDH12 (608830), ZFYVE26 (612012), RAD51B (602948), ZFP36L1 (601064), ACTN1 (102575), DCAF5 (603812), EXD2 (616940), GALNT16 (615132), ERH (601191), SUSD6 (616761), SRSF5 (600914), SLC10A1 (182396), SMOC1 (608488), SLC8A3 (607991), SYNJ2BP (609411), ADAM21 (603713), ADAM20 (603712), MED6 (602984), TTC9 (610488), MAP3K9 (600136), PCNX1 (617655), SIPA1L1 (617504), RGS6 (603894), DPF3 (601672), DCAF4 (616372), ZFYVE1 (605471), RBM25 (612427), PSEN1 (104311), PAPLN (617785), NUMB (603728), RIOX1 (611919), ACOT1 (614313), ACOT2 (609972), ACOT4 (614314), ACOT6 (614267), DNAL1 (610062), PNMA1 (604010), PTGR2 (608642), COQ6 (614647), ENTPD5 (603162), ALDH6A1 (603178), VSX2 (142993), ABCD4 (603214), SYNDIG1L (609999), NPC2 (601015), ISCA2 (615317), LTBP2 (602091), AREL1 (615380), PROX2 (615094), DLST (126063), PGF (601121), EIF2B2 (606454), MLH3 (604395), ACYP1 (600875), NEK9 (609798), TMED10 (605406), FOS (164810), JDP2 (608657), BATF (612476), FLVCR2 (610865), ERG28 (604576), TTLL5 (612268), TGFB3 (190230), IFT43 (614068), ESRRB (602167), VASH1 (609011), IRF2BPL (611720), CIPC (616995), NGB (605304), POMT2 (607439), GSTZ1 (603758), VIPAS39 (613401), AHSA1 (608466), ISM2 (612684), SPTLC2 (605713), ALKBH1 (605345), SLIRP (610211), SNW1 (603055), NRXN3 (600567), DIO2 (601413), TSHR (603372), GTF2A1 (600520), STON2 (608467), SEL1L (602329)	CytoRegions Not Set				false	arr[hg19] 14q21.3q31.3(50,489,504-85,669,101)x2-3	chr14:50489504-85669101
LST.OSCHP	2.33	Gain	5	q34	5505.412	372	28	LINC01947, LOC101927908, TENM2, CTB-178M22.2, WWC1, RARS, FBLL1, PANK3, MIR103A1, MIR103B1, SLIT3, LOC101927969, MIR218-2, LOC728095, MIR585, SPDL1, DOCK2, INSYN2B, MIR378E, FOXI1, LINC01187, C5orf58, LCP2, LOC100128059, LINC01366, KCNIP1, KCNMB1, CTD-2270F17.1	13	TENM2 (610119), WWC1 (610533), RARS (107820), PANK3 (606161), MIR103A1 (613187), SLIT3 (603745), MIR218-2 (616771), SPDL1 (616401), DOCK2 (603122), FOXI1 (601093), LCP2 (601603), KCNIP1 (604660), KCNMB1 (603951)	CytoRegions Not Set				false	arr[hg19] 5q34q35.1(164,373,906-169,879,318)x2-3	chr5:164373906-169879318
LST.OSCHP	2.33	Gain	5	q23.1	269.005	19	1	LINC02147	0		CytoRegions Not Set				false	arr[hg19] 5q23.1(117,050,367-117,319,372)x2-3	chr5:117050367-117319372
LST.OSCHP	2.33	Gain	9	p21.1	4963.887	333	15	LINGO2, MIR876, MIR873, LINC01242, LINC01243, ACO1, DDX58, TOPORS, SMIM27, NDUFB6, TAF1L, TMEM215, APTX, DNAJA1, SMU1	10	LINGO2 (609793), MIR873 (616137), ACO1 (100880), DDX58 (609631), TOPORS (609507), NDUFB6 (603322), TAF1L (607798), APTX (606350), DNAJA1 (602837), SMU1 (617811)	CytoRegions Not Set				false	arr[hg19] 9p21.1(28,142,252-33,106,139)x2-3	chr9:28142252-33106139
LST.OSCHP	2.33	Gain	12	p13.2	9368.926	837	68	LOC440084, LINC01252, ETV6, BCL2L14, MIR1244-3, MIR1244-1, MIR1244-4, MIR1244-2, LRP6, MANSC1, LOH12CR2, BORCS5, DUSP16, CREBL2, GPR19, CDKN1B, APOLD1, MIR613, DDX47, RPL13AP20, GPRC5A, MIR614, GPRC5D-AS1, GPRC5D, HEBP1, HTR7P1, FAM234B, GSG1, EMP1, LINC01559, GRIN2B, ATF7IP, PLBD1, PLBD1-AS1, GUCY2C, HIST4H4, H2AFJ, WBP11, C12orf60, SMCO3, ART4, MGP, ERP27, ARHGDIB, PDE6H, LINC01489, RERG, RERG-AS1, PTPRO, EPS8, STRAP, DERA, SLC15A5, MGST1, LMO3, SKP1P2, LINC02378, MIR3974, RERGL, PIK3C2G, PLCZ1, CAPZA3, PLEKHA5, AEBP2, LINC02398, LINC02468, PDE3A, SLCO1C1	38	ETV6 (600618), BCL2L14 (606126), LRP6 (603507), BORCS5 (616598), DUSP16 (607175), CREBL2 (603476), GPR19 (602927), CDKN1B (600778), APOLD1 (612456), DDX47 (615428), GPRC5A (604138), GPRC5D (607437), HEBP1 (605826), FAM234B (617838), EMP1 (602333), GRIN2B (138252), ATF7IP (613644), GUCY2C (601330), HIST4H4 (615069), ART4 (110600), MGP (154870), ERP27 (610642), ARHGDIB (602843), PDE6H (601190), RERG (612664), PTPRO (600579), EPS8 (600206), STRAP (605986), MGST1 (138330), LMO3 (180386), SKP1P2 (601435), PIK3C2G (609001), PLCZ1 (608075), CAPZA3 (608722), PLEKHA5 (607770), AEBP2 (617934), PDE3A (123805), SLCO1C1 (613389)	CytoRegions Not Set				false	arr[hg19] 12p13.2p12.2(11,592,396-20,961,322)x2-3	chr12:11592396-20961322
LST.OSCHP	2.33	Gain	7	p21.1	312.996	24	5	MACC1, LOC100506098, LOC101927769, LOC101927811, ITGB8	2	MACC1 (612646), ITGB8 (604160)	CytoRegions Not Set				false	arr[hg19] 7p21.1(20,207,356-20,520,352)x2-3	chr7:20207356-20520352
LST.OSCHP	2.33	Gain	7	p21.2	352.488	26	3	MEOX2, LOC105375166, LINC02587	1	MEOX2 (600535)	CytoRegions Not Set				false	arr[hg19] 7p21.2(15,715,055-16,067,543)x2-3	chr7:15715055-16067543
LST.OSCHP	2.33	Gain	7	p15.2	277.669	19	1	MIR148A	1	MIR148A (613786)	CytoRegions Not Set				false	arr[hg19] 7p15.2(25,817,701-26,095,370)x2-3	chr7:25817701-26095370
LST.OSCHP	2.33	Gain	21	p11.2	38449.296	2349	378	MIR3648-2, MIR3648-1, TEKT4P2, TPTE, BAGE4, BAGE5, BAGE3, BAGE2, BAGE, ANKRD30BP2, MIR3156-3, LINC01674, POTED, MIR3118-1, LOC110091777, MIR8069-1, MIR8069-2, CYP4F29P, LOC110091776, ANKRD20A11P, LIPI, RBM11, ABCC13, HSPA13, SAMSN1, SAMSN1-AS1, LOC388813, LINC02246, NRIP1, USP25, MIR99AHG, SNORD74B, MIR99A, MIRLET7C, MIR125B2, LINC01549, CXADR, BTG3, BTG3-AS1, C21orf91-OT1, C21orf91, CHODL-AS1, CHODL, TMPRSS15, MIR548XHG, MIR548X, LINC01683, LINC02573, LINC00320, NCAM2, LINC00317, LINC01425, LINC01687, LINC00308, MIR6130, D21S2088E, LINC01689, LINC01684, LINC01692, LINC00158, MIR155HG, MIR155, LINC00515, MRPL39, JAM2, ATP5PF, GABPA, APP, CYYR1-AS1, CYYR1, ADAMTS1, ADAMTS5, MIR4759, LINC00113, LINC00314, LINC01697, LINC01695, LINC00161, N6AMT1, LTN1, RWDD2B, USP16, CCT8, MAP3K7CL, LINC00189, BACH1, BACH1-IT2, BACH1-IT3, GRIK1, GRIK1-AS2, GRIK1-AS1, CLDN17, LINC00307, CLDN8, KRTAP24-1, KRTAP25-1, KRTAP26-1, KRTAP27-1, KRTAP23-1, KRTAP13-2, MIR4327, KRTAP13-1, KRTAP13-3, KRTAP13-4, KRTAP15-1, KRTAP19-1, KRTAP19-2, KRTAP19-3, KRTAP19-4, KRTAP19-5, KRTAP19-6, KRTAP19-7, KRTAP22-2, KRTAP6-3, KRTAP6-2, KRTAP22-1, KRTAP6-1, KRTAP20-1, KRTAP20-4, KRTAP20-2, KRTAP20-3, KRTAP21-3, KRTAP21-2, KRTAP21-1, KRTAP8-1, KRTAP7-1, KRTAP11-1, KRTAP19-8, TIAM1, LOC150051, SOD1, SCAF4, HUNK, LINC00159, MIS18A, MRAP, URB1, SNORA80A, URB1-AS1, EVA1C, C21orf59-TCP10L, TCP10L, CFAP298, SYNJ1, PAXBP1-AS1, PAXBP1, C21orf62-AS1, C21orf62, LINC01690, OLIG2, LINC00945, OLIG1, LOC101928107, LINC01548, IFNAR2, IL10RB-DT, IL10RB, IFNAR1, IFNGR2, TMEM50B, DNAJC28, GART, SON, MIR6501, DONSON, CRYZL1, ITSN1, ATP5PO, LINC00649, LOC101928126, SLC5A3, MRPS6, LINC00310, KCNE2, SMIM11A, SMIM11B, FAM243A, KCNE1, KCNE1B, RCAN1, CLIC6, LINC00160, LINC01426, RUNX1, RUNX1-IT1, LOC100506403, MIR802, PPP1R2P2, LOC101928269, LINC01436, SETD4, LOC100133286, CBR1, LOC105369306, CBR3-AS1, CBR3, DOP1B, MORC3, CHAF1B, CLDN14, SIM2, HLCS, RIPPLY3, LOC105372795, PIGP, TTC3, TTC3-AS1, DSCR9, VPS26C, DYRK1A, KCNJ6, DSCR4, DSCR8, DSCR10, KCNJ15, LINC01423, ERG, LINC00114, ETS2, LOC101928398, LOC400867, LINC01700, PSMG1, BRWD1, BRWD1-AS2, BRWD1-AS1, HMGN1, WRB, WRB-SH3BGR, LCA5L, SH3BGR, MIR6508, B3GALT5-AS1, B3GALT5, IGSF5, PCP4, DSCAM, MIR4760, DSCAM-AS1, DSCAM-IT1, LINC00323, MIR3197, BACE2, PLAC4, FAM3B, MX2, MX1, TMPRSS2, LINC00111, LINC00479, LINC00112, RIPK4, MIR6814, PRDM15, C2CD2, SNORA91, ZBTB21, ZNF295-AS1, UMODL1, UMODL1-AS1, ABCG1, TFF3, TFF2, TFF1, TMPRSS3, UBASH3A, RSPH1, LOC101930094, SLC37A1, LINC01671, PDE9A, LINC01668, WDR4, NDUFV3, ERVH48-1, MIR5692B, PKNOX1, CBS, CBSL, U2AF1, U2AF1L5, FRGCA, LOC106780825, CRYAA, CRYAA2, LINC00322, LINC01679, SIK1B, SIK1, LINC00319, LINC01669, LINC00313, HSF2BP, H2BFS, MIR6070, RRP1B, PDXK, CSTB, RRP1, AATBC, AGPAT3, TRAPPC10, PWP2, GATD3A, GATD3B, LINC01678, ICOSLG, LOC102723996, DNMT3L, LOC105372833, AIRE, PFKL, C21orf2, TRPM2, TRPM2-AS, LRRC3-DT, LRRC3, LINC02575, TSPEAR, TSPEAR-AS1, TSPEAR-AS2, KRTAP10-1, KRTAP10-2, KRTAP10-3, KRTAP10-4, KRTAP10-5, KRTAP10-6, KRTAP10-7, KRTAP10-8, KRTAP10-9, KRTAP10-10, KRTAP10-11, KRTAP12-4, KRTAP12-3, KRTAP12-2, KRTAP12-1, KRTAP10-12, UBE2G2, LINC01424, SUMO3, PTTG1IP, ITGB2, ITGB2-AS1, LINC01547, FAM207A, LINC00163, PICSAR, SSR4P1, ADARB1, LINC00334, POFUT2, LOC642852, LINC00316, COL18A1, COL18A1-AS2, COL18A1-AS1, MIR6815, SLC19A1, LINC01694, PCBP3, LOC100129027, LOC101928796, COL6A1, COL6A2, FTCD, FTCD-AS1, SPATC1L, LSS, SNORD159, MCM3AP-AS1, MCM3AP, YBEY, C21orf58, PCNT, DIP2A, DIP2A-IT1, S100B, PRMT2	169	TPTE (604336), BAGE3 (617777), BAGE2 (617776), BAGE (605167), POTED (607549), LIPI (609252), RBM11 (617937), ABCC13 (608835), HSPA13 (601100), SAMSN1 (607978), NRIP1 (602490), USP25 (604736), MIR99AHG (615964), MIR99A (614509), MIRLET7C (612144), MIR125B2 (610105), CXADR (602621), BTG3 (605674), CHODL (607247), TMPRSS15 (606635), NCAM2 (602040), MIR155 (609337), MRPL39 (611845), JAM2 (606870), ATP5PF (603152), GABPA (600609), APP (104760), CYYR1-AS1 (616021), CYYR1 (616020), ADAMTS1 (605174), ADAMTS5 (605007), N6AMT1 (614553), LTN1 (613083), RWDD2B (617843), USP16 (604735), CCT8 (617786), MAP3K7CL (611110), BACH1 (602751), GRIK1 (138245), CLDN17 (617005), CLDN8 (611231), KRTAP13-1 (608718), KRTAP11-1 (600064), TIAM1 (600687), SOD1 (147450), SCAF4 (616023), HUNK (606532), MRAP (609196), URB1 (608865), TCP10L (608365), CFAP298 (615494), SYNJ1 (604297), PAXBP1 (617621), OLIG2 (606386), OLIG1 (606385), IFNAR2 (602376), IL10RB (123889), IFNAR1 (107450), IFNGR2 (147569), TMEM50B (617894), GART (138440), SON (182465), DONSON (611428), CRYZL1 (603920), ITSN1 (602442), ATP5PO (600828), SLC5A3 (600444), MRPS6 (611973), KCNE2 (603796), KCNE1 (176261), RCAN1 (602917), CLIC6 (615321), RUNX1 (151385), MIR802 (616090), CBR1 (114830), CBR3 (603608), DOP1B (604803), MORC3 (610078), CHAF1B (601245), CLDN14 (605608), SIM2 (600892), HLCS (609018), RIPPLY3 (609892), PIGP (605938), TTC3 (602259), VPS26C (605298), DYRK1A (600855), KCNJ6 (600877), DSCR4 (604829), DSCR8 (613396), KCNJ15 (602106), ERG (165080), LINC00114 (611723), ETS2 (164740), PSMG1 (605296), BRWD1 (617824), HMGN1 (163920), WRB (602915), SH3BGR (602230), B3GALT5 (604066), IGSF5 (610638), PCP4 (601629), DSCAM (602523), BACE2 (605668), PLAC4 (613770), FAM3B (608617), MX2 (147890), MX1 (147150), TMPRSS2 (602060), RIPK4 (605706), PRDM15 (617692), C2CD2 (617581), ZBTB21 (616485), UMODL1 (613859), ABCG1 (603076), TFF3 (600633), TFF2 (182590), TFF1 (113710), TMPRSS3 (605511), UBASH3A (605736), RSPH1 (609314), SLC37A1 (608094), PDE9A (602973), WDR4 (605924), NDUFV3 (602184), PKNOX1 (602100), CBS (613381), U2AF1 (191317), CRYAA (123580), SIK1 (605705), HSF2BP (604554), RRP1B (610654), PDXK (179020), CSTB (601145), RRP1 (610653), AGPAT3 (614794), TRAPPC10 (602103), PWP2 (601475), GATD3A (601659), ICOSLG (605717), DNMT3L (606588), AIRE (607358), PFKL (171860), C21orf2 (603191), TRPM2 (603749), LRRC3 (617620), TSPEAR (612920), UBE2G2 (603124), SUMO3 (602231), PTTG1IP (603784), ITGB2 (600065), LINC00163 (610259), PICSAR (617191), ADARB1 (601218), POFUT2 (610249), COL18A1 (120328), SLC19A1 (600424), PCBP3 (608502), COL6A1 (120220), COL6A2 (120240), FTCD (606806), SPATC1L (612412), LSS (600909), MCM3AP (603294), YBEY (617461), PCNT (605925), DIP2A (607711), S100B (176990), PRMT2 (601961)	CytoRegions Not Set				false	arr[hg19] 21p11.2q22.3(9,648,314-48,097,610)x2-3	chr21:9648314-48097610
LST.OSCHP	2.33	Gain	14	q32.33	102.086	18	4	MIR4507, MIR4538, MIR4537, MIR4539	0		CytoRegions Not Set				false	arr[hg19] 14q32.33(106,277,390-106,379,476)x2-3	chr14:106277390-106379476
LST.OSCHP	2.33	Gain	10	p15.1	20156.945	1473	154	MIR6078, LOC101927964, LINC00702, LINC00703, MANCR, LINC00705, AKR1E2, AKR1C6P, AKR1C1, AKR1C2, AKR1C3, AKR1C8P, AKR1C4, LINC02561, UCN3, TUBAL3, NET1, CALML5, CALML3-AS1, CALML3, LOC105376382, ASB13, FAM208B, GDI2, ANKRD16, FBH1, IL15RA, IL2RA, RBM17, PFKFB3, MIR3155A, MIR3155B, LOC399715, LOC399716, PRKCQ, PRKCQ-AS1, LOC101928150, MIR4454, LINP1, LINC00706, LINC00707, SFMBT2, SNORD129, ITIH5, ITIH2, KIN, ATP5F1C, TAF3, GATA3-AS1, GATA3, LINC00708, LOC105376398, LOC105755953, LOC101928272, LINC00709, LOC101928298, LOC101928322, CELF2, SFTA1P, LINC00710, CELF2-AS2, CELF2-AS1, USP6NL, ECHDC3, PROSER2, PROSER2-AS1, UPF2, DHTKD1, SEC61A2, MIR548AK, NUDT5, CDC123, CAMK1D, MIR4480, MIR4481, MIR548Q, CCDC3, OPTN, MCM10, RNU6-2, UCMA, PHYH, SEPHS1, BEND7, PRPF18, FRMD4A, LOC101928453, MIR4293, MIR1265, FAM107B, CDNF, HSPA14, SUV39H2, DCLRE1C, MEIG1, DCLRE1CP1, ACBD7-DCLRE1CP1, OLAH, ACBD7, C10orf111, RPP38, NMT2, PPIAP30, FAM171A1, ITGA8, MINDY3, PTER, C1QL3, RSU1, CUBN, TRDMT1, VIM-AS1, VIM, ST8SIA6, ST8SIA6-AS1, HACD1, STAM-AS1, STAM, TMEM236, MRC1, MIR511, SLC39A12, SLC39A12-AS1, CACNB2, NSUN6, ARL5B, MALRD1, LOC101928834, PLXDC2, MIR4675, NEBL, C10orf113, NEBL-AS1, LOC105376444, CASC10, MIR1915, SKIDA1, MLLT10, DNAJC1, EBLN1, LOC100130992, COMMD3, COMMD3-BMI1, BMI1, SPAG6, LOC100499489, PIP4K2A, ARMC3, MSRB2, PTF1A, C10orf67, LOC105376453, OTUD1, KIAA1217	76	AKR1E2 (617451), AKR1C1 (600449), AKR1C2 (600450), AKR1C3 (603966), AKR1C4 (600451), UCN3 (605901), NET1 (606450), CALML5 (605183), CALML3 (114184), ASB13 (615055), GDI2 (600767), FBH1 (607222), IL15RA (601070), IL2RA (147730), RBM17 (606935), PFKFB3 (605319), PRKCQ (600448), SFMBT2 (615392), ITIH5 (609783), ITIH2 (146640), KIN (601720), ATP5F1C (108729), TAF3 (606576), GATA3 (131320), CELF2 (602538), USP6NL (605405), UPF2 (605529), DHTKD1 (614984), NUDT5 (609230), CDC123 (617708), CAMK1D (607957), OPTN (602432), MCM10 (609357), PHYH (602026), SEPHS1 (600902), PRPF18 (604993), FRMD4A (616305), CDNF (611233), HSPA14 (610369), SUV39H2 (606503), DCLRE1C (605988), MEIG1 (614174), RPP38 (606116), NMT2 (603801), ITGA8 (604063), MINDY3 (611649), PTER (604446), C1QL3 (615227), RSU1 (179555), CUBN (602997), TRDMT1 (602478), VIM (193060), ST8SIA6 (610139), HACD1 (610467), STAM (601899), MRC1 (153618), SLC39A12 (608734), CACNB2 (600003), NSUN6 (617199), ARL5B (608909), MALRD1 (617715), PLXDC2 (606827), NEBL (605491), MIR1915 (615202), MLLT10 (602409), DNAJC1 (611207), EBLN1 (613249), COMMD3 (616700), BMI1 (164831), SPAG6 (605730), PIP4K2A (603140), ARMC3 (611226), MSRB2 (613782), PTF1A (607194), OTUD1 (612022), KIAA1217 (617367)	CytoRegions Not Set				false	arr[hg19] 10p15.1p12.2(3,917,236-24,074,181)x2-3	chr10:3917236-24074181
LST.OSCHP	2.33	Gain	7	p13	306.526	21	5	MYL7, GCK, YKT6, CAMK2B, NUDCD3	5	MYL7 (613993), GCK (138079), YKT6 (606209), CAMK2B (607707), NUDCD3 (610296)	CytoRegions Not Set				false	arr[hg19] 7p13(44,163,837-44,470,363)x2-3	chr7:44163837-44470363
LST.OSCHP	2.33	Gain	1	q21.1	576.683	51	19	NBPF20, NBPF19, NBPF9, LOC100996724, PDE4DIP, SEC22B, NOTCH2NLA, NOTCH2NLB, NOTCH2NLR, NOTCH2NLC, NBPF25P, NBPF10, LINC01719, HJV, TXNIP, POLR3GL, ANKRD34A, LIX1L, LIX1L-AS1	9	NBPF20 (614007), NBPF19 (614006), NBPF9 (613999), PDE4DIP (608117), SEC22B (604029), NBPF10 (614000), HJV (608374), TXNIP (606599), POLR3GL (617457)	CytoRegions Not Set				false	arr[hg19] 1q21.1(144,930,570-145,507,253)x2-3	chr1:144930570-145507253
LST.OSCHP	2.33	Gain	20	p12.2	281.843	75	4	PLCB4, LAMP5-AS1, LAMP5, PAK5	3	PLCB4 (600810), LAMP5 (614641), PAK5 (608038)	CytoRegions Not Set				false	arr[hg19] 20p12.2(9,392,071-9,673,914)x2-3	chr20:9392071-9673914
LST.OSCHP	2.33	Gain	9	q32	23076.421	1812	330	RGS3, ZNF618, AMBP, KIF12, COL27A1, MIR455, ORM1, ORM2, AKNA, WHRN, ATP6V1G1, TMEM268, TEX53, TEX48, TNFSF15, TNFSF8, TNC, LOC101928748, DEC1, LOC101928775, LINC00474, PAPPA, PAPPA-AS1, ASTN2, ASTN2-AS1, TRIM32, SNORA70C, LOC101928797, TLR4, LINC02578, BRINP1, LINC01613, MIR147A, CDK5RAP2, MEGF9, FBXW2, B3GNT10, PSMD5, CUTALP, PHF19, TRAF1, C5-OT1, C5, CNTRL, RAB14, GSN, GSN-AS1, STOM, GGTA1P, DAB2IP, TTLL11, MIR4478, NDUFA8, MORN5, LHX6, RBM18, MRRF, PTGS1, OR1J1, OR1J2, OR1J4, OR1N1, OR1N2, OR1L8, OR1Q1, OR1B1, OR1L1, OR1L3, OR1L4, OR1L6, OR5C1, OR1K1, PDCL, RC3H2, SNORD90, ZBTB6, ZBTB26, RABGAP1, GPR21, MIR600HG, MIR600, STRBP, CRB2, DENND1A, MIR601, MIR7150, LOC100505588, LHX2, NEK6, LOC613206, PSMB7, LOC100129034, NR5A1, NR6A1, MIR181A2HG, MIR181A2, MIR181B2, OLFML2A, WDR38, RPL35, ARPC5L, GOLGA1, SCAI, PPP6C, LOC105376271, RABEPK, HSPA5, GAPVD1, MAPKAP1, LOC51145, PBX3, LOC101929116, MVB12B, NRON, LMX1B, ZBTB43, ZBTB34, RALGPS1, ANGPTL2, GARNL3, SLC2A8, ZNF79, RPL12, SNORA65, LRSAM1, FAM129B, STXBP1, MIR3911, CFAP157, PTRH1, TTC16, TOR2A, SH2D3C, MIR3960, MIR2861, CDK9, FPGS, ENG, LOC102723566, AK1, MIR4672, ST6GALNAC6, ST6GALNAC4, PIP5KL1, DPM2, FAM102A, NAIF1, SLC25A25, SLC25A25-AS1, PTGES2, PTGES2-AS1, LCN2, C9orf16, CIZ1, DNM1, MIR199B, MIR3154, GOLGA2, SWI5, TRUB2, COQ4, SLC27A4, MIR1268A, URM1, MIR219A2, MIR219B, CERCAM, ODF2, GLE1, SPTAN1, WDR34, SET, PKN3, ZDHHC12, LOC100506100, ZER1, TBC1D13, ENDOG, SPOUT1, KYAT1, LRRC8A, PHYHD1, DOLK, NUP188, SH3GLB2, MIGA2, DOLPP1, CRAT, PTPA, IER5L, LOC101929331, C9orf106, LINC01503, LINC00963, NTMT1, C9orf50, ASB6, PRRX2, PRRX2-AS1, PTGES, TOR1B, TOR1A, C9orf78, USP20, MIR6855, FNBP1, GPR107, LOC401554, NCS1, HMCN2, ASS1, LOC100272217, FUBP3, MIR6856, PRDM12, EXOSC2, ABL1, QRFP, FIBCD1, LAMC3, AIF1L, NUP214, FAM78A, PLPP7, PRRC2B, SNORD62B, SNORD62A, POMT1, UCK1, RAPGEF1, MED27, NTNG2, SETX, TTF1, CFAP77, BARHL1, DDX31, GTF3C4, AK8, SPACA9, TSC1, GFI1B, MIR548AW, SNORD141A, SNORD141B, LOC105376306, GTF3C5, MIR6877, CEL, CELP, RALGDS, GBGT1, OBP2B, ABO, SURF6, MED22, RPL7A, SNORD24, SNORD36B, SNORD36A, SNORD36C, SURF1, SURF2, SURF4, STKLD1, REXO4, ADAMTS13, CACFD1, SLC2A6, MYMK, ADAMTSL2, FAM163B, DBH, DBH-AS1, SARDH, VAV2, BRD3OS, BRD3, LOC100130548, WDR5, RNU6ATAC, LINC02247, RXRA, MIR4669, COL5A1, COL5A1-AS1, LOC101448202, MIR3689A, MIR3689C, MIR3689D1, MIR3689B, MIR3689D2, MIR3689E, MIR3689F, FCN2, FCN1, OLFM1, LOC401557, C9orf62, PPP1R26-AS1, PPP1R26, C9orf116, MRPS2, LOC101928525, LCN1, OBP2A, PAEP, LINC01502, GLT6D1, LCN9, SOHLH1, KCNT1, CAMSAP1, UBAC1, NACC2, TMEM250, LHX3, QSOX2, DKFZP434A062, GPSM1, DNLZ, CARD9, SNAPC4, ENTR1, PMPCA, INPP5E, SEC16A, C9orf163, NOTCH1, MIR4673	197	RGS3 (602189), ZNF618 (617077), AMBP (176870), KIF12 (611278), COL27A1 (608461), ORM1 (138600), ORM2 (138610), AKNA (605729), WHRN (607928), ATP6V1G1 (607296), TNFSF15 (604052), TNFSF8 (603875), TNC (187380), DEC1 (604767), PAPPA (176385), PAPPA-AS1 (610689), ASTN2 (612856), TRIM32 (602290), TLR4 (603030), BRINP1 (602865), CDK5RAP2 (608201), MEGF9 (604268), FBXW2 (609071), PSMD5 (604452), PHF19 (609740), TRAF1 (601711), C5 (120900), CNTRL (605496), RAB14 (612673), GSN (137350), STOM (133090), GGTA1P (104175), DAB2IP (609205), NDUFA8 (603359), LHX6 (608215), MRRF (604602), PTGS1 (176805), PDCL (604421), RC3H2 (615231), ZBTB6 (605976), RABGAP1 (615882), GPR21 (601909), STRBP (611138), CRB2 (609720), DENND1A (613633), LHX2 (603759), NEK6 (604884), PSMB7 (604030), NR5A1 (184757), NR6A1 (602778), MIR181A2 (612743), MIR181B2 (612745), OLFML2A (615899), GOLGA1 (602502), PPP6C (612725), RABEPK (605962), HSPA5 (138120), GAPVD1 (611714), MAPKAP1 (610558), PBX3 (176312), NRON (609618), LMX1B (602575), ZBTB34 (611692), RALGPS1 (614444), ANGPTL2 (605001), SLC2A8 (605245), ZNF79 (194552), RPL12 (180475), LRSAM1 (610933), FAM129B (614045), STXBP1 (602926), TOR2A (608052), SH2D3C (604722), MIR2861 (613405), CDK9 (603251), FPGS (136510), ENG (131195), AK1 (103000), ST6GALNAC6 (610135), ST6GALNAC4 (606378), PIP5KL1 (612865), DPM2 (603564), FAM102A (610891), NAIF1 (610673), SLC25A25 (608745), PTGES2 (608152), LCN2 (600181), CIZ1 (611420), DNM1 (602377), MIR199B (614791), GOLGA2 (602580), SWI5 (616528), TRUB2 (610727), COQ4 (612898), SLC27A4 (604194), URM1 (612693), CERCAM (616626), ODF2 (602015), GLE1 (603371), SPTAN1 (182810), WDR34 (613363), SET (600960), PKN3 (610714), ZER1 (617764), TBC1D13 (616218), ENDOG (600440), SPOUT1 (617614), KYAT1 (600547), LRRC8A (608360), DOLK (610746), NUP188 (615587), SH3GLB2 (609288), MIGA2 (616774), DOLPP1 (614516), CRAT (600184), PTPA (600756), NTMT1 (613560), ASB6 (615051), PRRX2 (604675), PTGES (605172), TOR1B (608050), TOR1A (605204), USP20 (615143), FNBP1 (606191), NCS1 (603315), ASS1 (603470), FUBP3 (603536), PRDM12 (616458), EXOSC2 (602238), ABL1 (189980), QRFP (609795), FIBCD1 (613357), LAMC3 (604349), NUP214 (114350), POMT1 (607423), UCK1 (609328), RAPGEF1 (600303), MED27 (605044), SETX (608465), TTF1 (600777), BARHL1 (605211), DDX31 (616533), GTF3C4 (604892), AK8 (615365), TSC1 (605284), GFI1B (604383), GTF3C5 (604890), CEL (114840), RALGDS (601619), GBGT1 (606074), OBP2B (604606), ABO (110300), SURF6 (185642), MED22 (185641), RPL7A (185640), SURF1 (185620), SURF2 (185630), SURF4 (185660), REXO4 (602930), ADAMTS13 (604134), CACFD1 (613104), SLC2A6 (606813), MYMK (615345), ADAMTSL2 (612277), DBH (609312), SARDH (604455), VAV2 (600428), BRD3 (601541), WDR5 (609012), RNU6ATAC (601429), RXRA (180245), COL5A1 (120215), FCN2 (601624), FCN1 (601252), OLFM1 (605366), PPP1R26 (614056), C9orf116 (614502), MRPS2 (611971), LCN1 (151675), OBP2A (164320), PAEP (173310), GLT6D1 (613699), LCN9 (612903), SOHLH1 (610224), KCNT1 (608167), CAMSAP1 (613774), UBAC1 (608129), NACC2 (615786), LHX3 (600577), QSOX2 (612860), GPSM1 (609491), CARD9 (607212), SNAPC4 (602777), PMPCA (613036), INPP5E (613037), SEC16A (612854), NOTCH1 (190198)	CytoRegions Not Set				false	arr[hg19] 9q32q34.3(116,349,437-139,425,858)x2-3	chr9:116349437-139425858
LST.OSCHP	2.33	Gain	10	q23.31	2031.674	157	30	RNLS, LIPJ, LIPF, LIPK, LIPN, LIPM, ANKRD22, STAMBPL1, ACTA2-AS1, ACTA2, FAS, FAS-AS1, MIR4679-2, MIR4679-1, CH25H, LIPA, IFIT2, IFIT3, IFIT1B, IFIT1, IFIT5, SLC16A12, SLC16A12-AS1, PANK1, MIR107, FLJ37201, KIF20B, LINC00865, LINC01374, LINC01375	19	RNLS (609360), LIPJ (613921), LIPF (601980), LIPK (613922), LIPN (613924), LIPM (613923), STAMBPL1 (612352), ACTA2 (102620), FAS (134637), CH25H (604551), LIPA (613497), IFIT2 (147040), IFIT3 (604650), IFIT1 (147690), IFIT5 (616135), SLC16A12 (611910), PANK1 (606160), MIR107 (613189), KIF20B (605498)	CytoRegions Not Set				false	arr[hg19] 10q23.31(89,766,042-91,797,716)x2-3	chr10:89766042-91797716
LST.OSCHP	2.33	Gain	17	p11.2	8000.68	341	73	SLC5A10, FAM83G, GRAP, LOC79999, LOC388436, GRAPL, EPN2, EPN2-IT1, EPN2-AS1, B9D1, MIR1180, MAPK7, MFAP4, RNF112, SLC47A1, SNORA59A, SNORA59B, ALDH3A2, SLC47A2, ALDH3A1, ULK2, AKAP10, SPECC1, CCDC144CP, USP32P3, FAM106B, NOS2P3, LGALS9B, KRT16P3, CDRT15L2, LINC02088, LOC100287072, CCDC144NL, CCDC144NL-AS1, LOC339260, USP22, LINC01563, DHRS7B, TMEM11, NATD1, MAP2K3, KCNJ12, KCNJ18, C17orf51, UBBP4, FAM27E5, FLJ36000, MTRNR2L1, LOC105371703, MIR4522, WSB1, TBC1D3P5, KSR1, LGALS9, NOS2, LYRM9, LINC01992, NLK, PYY2, PPY2P, KRT18P55, TMEM97, IFT20, TNFAIP1, POLDIP2, TMEM199, MIR4723, SEBOX, VTN, SARM1, SLC46A1, SLC13A2, FOXN1	39	FAM83G (615886), GRAP (604330), EPN2 (607263), B9D1 (614144), MAPK7 (602521), MFAP4 (600596), RNF112 (601237), SLC47A1 (609832), ALDH3A2 (609523), SLC47A2 (609833), ALDH3A1 (100660), ULK2 (608650), AKAP10 (604694), SPECC1 (608793), USP22 (612116), DHRS7B (616160), MAP2K3 (602315), KCNJ12 (602323), KCNJ18 (613236),  (605160), MTRNR2L1 (616985), WSB1 (610091), KSR1 (601132), LGALS9 (601879), NOS2 (163730), NLK (609476), PYY2 (606637), PPY2P (606638), TMEM97 (612912), IFT20 (614394), TNFAIP1 (191161), POLDIP2 (611519), TMEM199 (616815), SEBOX (610975), VTN (193190), SARM1 (607732), SLC46A1 (611672), SLC13A2 (604148), FOXN1 (600838)	CytoRegions Not Set				false	arr[hg19] 17p11.2q11.2(18,863,104-26,863,784)x2-3	chr17:18863104-26863784
LST.OSCHP	2.33	Gain	6	p22.1	57.537	19	2	TRIM27, LINC01556	1	TRIM27 (602165)	CytoRegions Not Set				false	arr[hg19] 6p22.1(28,866,719-28,924,256)x2-3	chr6:28866719-28924256
LST.OSCHP	2.33	Gain	9	p22.3	11561.677	1007	61	TTC39B, SNAPC3, PSIP1, CCDC171, C9orf92, BNC2, BNC2-AS1, CNTLN, SH3GL2, ADAMTSL1, MIR3152, SAXO1, RRAGA, HAUS6, SCARNA8, PLIN2, DENND4C, RPS6, ACER2, SLC24A2, MLLT3, MIR4473, MIR4474, FOCAD, FOCAD-AS1, MIR491, SNORA30B, HACD4, IFNB1, IFNW1, IFNA21, IFNA4, IFNA7, IFNA10, IFNA16, IFNA17, IFNA14, IFNA22P, IFNA5, KLHL9, IFNA6, IFNA13, IFNA2, IFNA8, IFNA1, MIR31HG, IFNE, MIR31, MTAP, CDKN2A-DT, CDKN2A, CDKN2B-AS1, CDKN2B, DMRTA1, LINC01239, LOC101929563, ELAVL2, IZUMO3, TUSC1, LINC01241, LOC100506422	44	TTC39B (613574), SNAPC3 (602348), PSIP1 (603620), BNC2 (608669), CNTLN (611870), SH3GL2 (604465), ADAMTSL1 (609198), SAXO1 (616292), RRAGA (612194), HAUS6 (613433), SCARNA8 (615646), PLIN2 (103195), RPS6 (180460), ACER2 (613492), SLC24A2 (609838), MLLT3 (159558), FOCAD (614606), HACD4 (615941), IFNB1 (147640), IFNW1 (147553), IFNA21 (147584), IFNA4 (147564), IFNA7 (147567), IFNA10 (147577), IFNA16 (147580), IFNA17 (147583), IFNA14 (147579), IFNA5 (147565), KLHL9 (611201), IFNA6 (147566), IFNA13 (147578), IFNA2 (147562), IFNA8 (147568), IFNA1 (147660), MIR31HG (616356), IFNE (615223), MIR31 (612155), MTAP (156540), CDKN2A (600160), CDKN2B-AS1 (613149), CDKN2B (600431), DMRTA1 (614803), ELAVL2 (601673), TUSC1 (610529)	CytoRegions Not Set				false	arr[hg19] 9p22.3p21.2(15,228,956-26,790,633)x2-3	chr9:15228956-26790633
LST.OSCHP	2.33	Gain	9	p13.3	4514.14	336	91	UBAP2, DCAF12, UBAP1, KIF24, NUDT2, MYORG, C9orf24, FAM219A, DNAI1, ENHO, CNTFR, CNTFR-AS1, RPP25L, DCTN3, ARID3C, SIGMAR1, GALT, IL11RA, CCL27, LOC730098, CCL19, CCL21, FAM205A, FAM205BP, FAM205C, PHF24, DNAJB5-DT, DNAJB5, C9orf131, VCP, FANCG, PIGO, STOML2, FAM214B, UNC13B, ATP8B5P, RUSC2, FAM166B, TESK1, MIR4667, CD72, LOC101926948, SIT1, RMRP, CCDC107, ARHGEF39, CA9, TPM2, TLN1, MIR6852, CREB3, MIR6853, GBA2, RGP1, MSMP, NPR2, SPAG8, HINT2, FAM221B, TMEM8B, LINC00950, OR13J1, HRCT1, SPAAR, OR2S2, RECK, GLIPR2, CCIN, CLTA, GNE, RNF38, MELK, MIR4475, PAX5, MIR4540, MIR4476, EBLN3P, ZCCHC7, GRHPR, ZBTB5, POLR1E, FBXO10, TOMM5, FRMPD1, TRMT10B, EXOSC3, DCAF10, SLC25A51, SHB, ALDH1B1, IGFBPL1	52	UBAP1 (609787), KIF24 (613747), NUDT2 (602852), DNAI1 (604366), CNTFR (118946), DCTN3 (607387), SIGMAR1 (601978), GALT (606999), IL11RA (600939), CCL27 (604833), CCL19 (602227), CCL21 (602737), DNAJB5 (611328), VCP (601023), FANCG (602956), PIGO (614730), STOML2 (608292), UNC13B (605836), RUSC2 (611053), TESK1 (601782), CD72 (107272), SIT1 (604964), RMRP (157660), CA9 (603179), TPM2 (190990), TLN1 (186745), CREB3 (606443), GBA2 (609471), RGP1 (615742), MSMP (612191), NPR2 (108961), SPAG8 (605731), HINT2 (609997), TMEM8B (616888), SPAAR (617627), RECK (605227), GLIPR2 (607141), CCIN (603960), CLTA (118960), GNE (603824), RNF38 (612488), MELK (607025), PAX5 (167414), GRHPR (604296), ZBTB5 (616590), FBXO10 (609092), TOMM5 (616169), FRMPD1 (616919), EXOSC3 (606489), SHB (600314), ALDH1B1 (100670), IGFBPL1 (610413)	CytoRegions Not Set				false	arr[hg19] 9p13.3p13.1(33,980,991-38,495,131)x2-3	chr9:33980991-38495131
LST.OSCHP	2.33	Gain	6	q14.3	3155.165	251	29	ZNF292, GJB7, SMIM8, C6orf163, LINC01590, CFAP206, SLC35A1, RARS2, ORC3, AKIRIN2, LOC101928911, SPACA1, CNR1, LOC101928936, RNGTT, PNRC1, SRSF12, PM20D2, GABRR1, GABRR2, UBE2J1, RRAGD, ANKRD6, LYRM2, LOC101929057, MDN1, CASP8AP2, GJA10, BACH2	19	ZNF292 (616213), GJB7 (611921), SLC35A1 (605634), RARS2 (611524), ORC3 (604972), AKIRIN2 (615165), SPACA1 (612739), CNR1 (114610), RNGTT (603512), PNRC1 (606714), PM20D2 (615913), GABRR1 (137161), GABRR2 (137162), UBE2J1 (616175), RRAGD (608268), ANKRD6 (610583), CASP8AP2 (606880), GJA10 (611924), BACH2 (605394)	CytoRegions Not Set				false	arr[hg19] 6q14.3q15(87,864,139-91,019,304)x2-3	chr6:87864139-91019304
LST.OSCHP	2.33	Gain	4	p15.1	495.866	34	0		0		CytoRegions Not Set				false	arr[hg19] 4p15.1p14(35,425,257-35,921,123)x2-3	chr4:35425257-35921123
LST.OSCHP	2.33	Gain	18	q21.2	443.553	29	0		0		CytoRegions Not Set				false	arr[hg19] 18q21.2(51,180,279-51,623,832)x2-3	chr18:51180279-51623832
LST.OSCHP	1.67	Loss	16	q11.2	7539.599	525	56	ANKRD26P1, SHCBP1, VPS35, ORC6, MYLK3, C16orf87, GPT2, SNORD148, DNAJA2, NETO2, ITFG1-AS1, ITFG1, PHKB, LINC02192, LINC02133, LINC02134, ABCC12, ABCC11, LONP2, SIAH1, N4BP1, CBLN1, C16orf78, ZNF423, ADAM3B, CNEP1R1, HEATR3, TENT4B, ADCY7, MIR6771, BRD7, LINC02178, NKD1, SNX20, LOC101927272, NOD2, CYLD, MIR3181, LINC02168, LINC02127, SALL1, LINC01571, C16orf97, LINC00919, LINC02180, CASC22, TOX3, CASC16, LOC105371267, CHD9, LOC643802, LOC102723373, RBL2, AKTIP, RPGRIP1L, FTO	30	SHCBP1 (611027), VPS35 (601501), ORC6 (607213), MYLK3 (612147), GPT2 (138210), DNAJA2 (611322), NETO2 (607974), ITFG1 (611803), PHKB (172490), ABCC12 (607041), ABCC11 (607040), LONP2 (617774), SIAH1 (602212), CBLN1 (600432), ZNF423 (604557), CNEP1R1 (616869), HEATR3 (614951), TENT4B (605540), ADCY7 (600385), NKD1 (607851), SNX20 (613281), NOD2 (605956), CYLD (605018), SALL1 (602218), TOX3 (611416), CHD9 (616936), RBL2 (180203), AKTIP (608483), RPGRIP1L (610937), FTO (610966)	CytoRegions Not Set				false	arr[hg19] 16q11.2q12.2(46,461,308-54,000,907)x1-2	chr16:46461308-54000907
LST.OSCHP	1.67	Loss	16	q21	3341.474	222	5	APOOP5, LINC02141, LOC729159, MIR4426, CDH8	1	CDH8 (603008)	CytoRegions Not Set				false	arr[hg19] 16q21(59,096,401-62,437,875)x1-2	chr16:59096401-62437875
LST.OSCHP	1.67	Loss	X	q12	11595.031	1040	111	AR, OPHN1, YIPF6, STARD8, EFNB1, PJA1, LINC00269, FAM155B, EDA, MIR676, AWAT2, OTUD6A, IGBP1, DGAT2L6, AWAT1, P2RY4, ARR3, RAB41, PDZD11, KIF4A, GDPD2, DLG3, DLG3-AS1, TEX11, SNORD3E, SLC7A3, SNX12, FOXO4, CXorf65, IL2RG, MED12, NLGN3, BCYRN1, GJB1, ZMYM3, NONO, ITGB1BP2, TAF1, INGX, OGT, GCNA, CXCR3, LOC100129291, LOC101059915, LOC100132741, LINC00891, CXorf49, CXorf49B, NHSL2, RPS26P11, RTL5, FLJ44635, PIN4, ERCC6L, RPS4X, CITED1, HDAC8, PHKA1, PHKA1-AS1, FAM236B, FAM236A, FAM236C, FAM236D, DMRTC1, DMRTC1B, FAM226B, FAM226A, PABPC1L2B-AS1, PABPC1L2B, PABPC1L2A, NAP1L6, NAP1L2, CDX4, MAP2K4P1, CHIC1, TSIX, XIST, JPX, FTX, MIR421, MIR374B, MIR374C, MIR545, MIR374A, ZCCHC13, SLC16A2, RLIM, NEXMIF, ABCB7, UPRT, ZDHHC15, TTC3P1, MAGEE2, PBDC1, MAGEE1, MIR325HG, MIR384, MIR325, FGF16, ATRX, MAGT1, COX7B, ATP7A, PGAM4, PGK1, TAF9B, CYSLTR1, RTL3, LPAR4, MIR4328, P2RY10	68	AR (313700), OPHN1 (300127), YIPF6 (300996), STARD8 (300689), EFNB1 (300035), PJA1 (300420), EDA (300451), AWAT2 (300925), OTUD6A (300714), IGBP1 (300139), DGAT2L6 (300926), AWAT1 (300924), P2RY4 (300038), ARR3 (301770), PDZD11 (300632), KIF4A (300521), GDPD2 (300940), DLG3 (300189), TEX11 (300311), SLC7A3 (300443), SNX12 (300883), FOXO4 (300033), IL2RG (308380), MED12 (300188), NLGN3 (300336), BCYRN1 (606089), GJB1 (304040), ZMYM3 (300061), NONO (300084), ITGB1BP2 (300332), TAF1 (313650), INGX (300452), OGT (300255), GCNA (300369), CXCR3 (300574), PIN4 (300252), ERCC6L (300687), RPS4X (312760), CITED1 (300149), HDAC8 (300269), PHKA1 (311870), DMRTC1 (300878), NAP1L2 (300026), CDX4 (300025), CHIC1 (300922), TSIX (300181), XIST (314670), JPX (300832), FTX (300936), SLC16A2 (300095), RLIM (300379), NEXMIF (300524), ABCB7 (300135), UPRT (300656), ZDHHC15 (300576), MAGEE2 (300760), MAGEE1 (300759), FGF16 (300827), ATRX (300032), MAGT1 (300715), COX7B (300885), ATP7A (300011), PGAM4 (300567), PGK1 (311800), TAF9B (300754), CYSLTR1 (300201), LPAR4 (300086), P2RY10 (300529)	CytoRegions Not Set				false	arr[hg19] Xq12q21.1(66,795,305-78,390,336)x1-2	chrX:66795305-78390336
LST.OSCHP	1.67	Loss	5	q34	4341.459	294	14	ATP10B, LINC02159, GABRB2, GABRA6, GABRA1, LINC01202, GABRG2, CCNG1, NUDCD2, HMMR, HMMR-AS1, MAT2B, LINC02143, LOC102546299	7	GABRB2 (600232), GABRA6 (137143), GABRA1 (137160), GABRG2 (137164), CCNG1 (601578), HMMR (600936), MAT2B (605527)	CytoRegions Not Set				false	arr[hg19] 5q34(160,026,776-164,368,235)x1-2	chr5:160026776-164368235
LST.OSCHP	1.67	Loss	15	q11.1	82235.946	6012	976	CHEK2P2, HERC2P3, GOLGA6L6, GOLGA8CP, NBEAP1, MIR3118-2, MIR3118-4, MIR3118-3, POTEB2, POTEB, POTEB3, NF1P2, MIR5701-2, MIR5701-3, MIR5701-1, LINC01193, LINC02203, FAM30C, LOC646214, CXADRP2, LOC101927079, OR4M2, OR4N4, OR4N3P, LOC102724760, IGHV1OR15-1, LOC642131, IGHV1OR15-3, MIR1268A, REREP3, MIR4509-2, MIR4509-3, MIR4509-1, GOLGA8DP, GOLGA6L1, GOLGA6L22, TUBGCP5, CYFIP1, NIPA2, NIPA1, LOC283683, WHAMMP3, GOLGA8IP, HERC2P2, HERC2P7, GOLGA8EP, GOLGA8S, GOLGA6L2, MIR4508, MKRN3, MAGEL2, NDN, PWRN4, PWRN2, PWRN3, PWRN1, NPAP1, SNRPN, SNHG14, SNURF, SNORD107, PWARSN, PWAR5, SNORD64, SNORD108, PWAR6, SNORD109A, SNORD109B, SNORD116-1, SNORD116-2, SNORD116-9, SNORD116-3, SNORD116-4, SNORD116-5, SNORD116-7, SNORD116-6, SNORD116-8, SNORD116-10, SNORD116-11, SNORD116-12, SNORD116-13, SNORD116-14, SNORD116-15, SNORD116-16, SNORD116-19, SNORD116-17, SNORD116-18, SNORD116-20, SNORD116-21, SNORD116-22, SNORD116-23, SNORD116-24, SNORD116-25, SNORD116-26, SNORD116-27, SNORD116-28, SNORD116-29, SNORD116-30, IPW, PWAR1, SNORD115-1, SNORD115-2, SNORD115-3, SNORD115-4, SNORD115-5, SNORD115-9, SNORD115-12, SNORD115-10, SNORD115-6, SNORD115-7, SNORD115-8, SNORD115-11, SNORD115-29, SNORD115-36, SNORD115-43, SNORD115-13, SNORD115-14, SNORD115-16, SNORD115-19, SNORD115-18, SNORD115-17, SNORD115-20, SNORD115-15, SNORD115-21, SNORD115-22, PWAR4, SNORD115-23, SNORD115-24, SNORD115-25, SNORD115-26, SNORD115-27, SNORD115-28, SNORD115-30, SNORD115-31, SNORD115-32, SNORD115-33, SNORD115-34, SNORD115-35, SNORD115-37, SNORD115-38, SNORD115-39, SNORD115-40, SNORD115-41, SNORD115-42, SNORD115-44, SNORD115-45, SNORD115-46, SNORD115-47, SNORD115-48, UBE3A, ATP10A, MIR4715, LINC02346, LINC00929, GABRB3, GABRA5, GABRG3, GABRG3-AS1, OCA2, HERC2, GOLGA8F, GOLGA8G, HERC2P11, HERC2P9, GOLGA8M, WHAMMP2, LOC100289656, PDCD6IPP2, APBA2, FAM189A1, NSMCE3, LOC100130111, TJP1, GOLGA8J, ULK4P3, GOLGA8T, LINC02249, CHRFAM7A, DNM1P50, GOLGA8R, LOC100288203, GOLGA8Q, ULK4P1, ULK4P2, GOLGA8H, ARHGAP11B, LOC100288637, HERC2P10, FAN1, MTMR10, TRPM1, MIR211, LINC02352, LOC283710, KLF13, OTUD7A, CHRNA7, GOLGA8K, GOLGA8O, WHAMMP1, LINC02256, LOC101928042, GOLGA8N, ARHGAP11A, SCG5, LOC105370757, GREM1, LOC100131315, FMN1, TMCO5B, LOC101928134, RYR3, AVEN, CHRM5, EMC7, PGBD4, KATNBL1, EMC4, SLC12A6, NOP10, NUTM1, LPCAT4, GOLGA8A, MIR1233-1, MIR1233-2, GOLGA8B, LINC02252, GJD2, LOC101928174, ACTC1, AQR, ZNF770, NANOGP8, ANP32AP1, DPH6, MIR3942, DPH6-DT, MIR4510, C15orf41, CSNK1A1P1, LOC145845, MEIS2, MIR8063, TMCO5A, LINC02345, LINC01852, SPRED1, FAM98B, RASGRP1, C15orf53, C15orf54, THBS1, FSIP1, LOC105370941, GPR176, EIF2AK4, SRP14, SRP14-AS1, BMF, BUB1B, BUB1B-PAK6, PAK6, C15orf56, ANKRD63, PLCB2, INAFM2, CCDC9B, PHGR1, DISP2, KNSTRN, IVD, BAHD1, CHST14, CCDC32, MRPL42P5, RPUSD2, KNL1, RAD51-AS1, RAD51, RMDN3, GCHFR, DNAJC17, C15orf62, ZFYVE19, PPP1R14D, SPINT1-AS1, SPINT1, RHOV, VPS18, LOC105370943, DLL4, CHAC1, INO80, EXD1, CHP1, OIP5-AS1, OIP5, NUSAP1, NDUFAF1, RTF1, ITPKA, LTK, RPAP1, TYRO3, MGA, MIR626, MAPKBP1, JMJD7, JMJD7-PLA2G4B, PLA2G4B, SPTBN5, MIR4310, LOC105370792, EHD4, EHD4-AS1, PLA2G4E-AS1, PLA2G4E, PLA2G4D, PLA2G4F, VPS39, MIR627, TMEM87A, GANC, CAPN3, ZNF106, SNAP23, LRRC57, HAUS2, STARD9, CDAN1, TTBK2, UBR1, TMEM62, CCNDBP1, EPB42, TGM5, TGM7, LCMT2, ADAL, ZSCAN29, TUBGCP4, TP53BP1, MAP1A, PPIP5K1, CKMT1B, STRC, CATSPER2, PPIP5K1P1-CATSPER2, CKMT1A, STRCP1, CATSPER2P1, PDIA3, ELL3, SERF2, SERF2-C15ORF63, MIR1282, SERINC4, HYPK, MFAP1, WDR76, FRMD5, PIN4P1, CASC4, CTDSPL2, EIF3J-DT, EIF3J, SPG11, PATL2, B2M, LOC100419583, TRIM69, SORD2P, TERB2, SORD, DUOX2, DUOXA2, DUOXA1, DUOX1, SHF, LOC101928414, SLC28A2, GATM, SPATA5L1, C15orf48, MIR147B, SLC30A4, HMGN2P46, SNORA41B, BLOC1S6, SQOR, LOC105370802, SEMA6D, LINC01491, SLC24A5, MYEF2, CTXN2, SLC12A1, DUT, FBN1, CEP152, SHC4, EID1, SECISBP2L, COPS2, GALK2, NDUFAF4P1, MIR4716, FAM227B, FGF7, DTWD1, ATP8B4, SLC27A2, HDC, GABPB1, GABPB1-IT1, GABPB1-AS1, MIR4712, USP8, USP50, TRPM7, SPPL2A, AP4E1, DCAF13P3, MIR4713HG, TNFAIP8L3, CYP19A1, MIR4713, MIR7973-2, MIR7973-1, GLDN, DMXL2, SCG3, LYSMD2, TMOD2, TMOD3, LOC100422556, LEO1, MAPK6-DT, MAPK6, BCL2L10, GNB5, CERNA1, MYO5C, MIR1266, MYO5A, ARPP19, FAM214A, ONECUT1, LINC02490, WDR72, UNC13C, LOC105370829, RSL24D1, RAB27A, PIGBOS1, PIGB, CCPG1, DNAAF4-CCPG1, MIR628, C15orf65, DNAAF4, PYGO1, PRTG, NEDD4, RFX7, TEX9, MNS1, ZNF280D, LOC145783, TCF12, SNORD13D, LINC00926, LINC01413, CGNL1, MYZAP, GCOM1, POLR2M, ALDH1A2, LOC283665, AQP9, LIPC, LIPC-AS1, ADAM10, HSP90AB4P, LOC101928725, MINDY2, SLTM, RNF111, CCNB2, MYO1E, MIR2116, LDHAL6B, FAM81A, GCNT3, GTF2A2, BNIP2, FOXB1, ANXA2, ICE2, RORA-AS1, RORA, RORA-AS2, LINC02349, VPS13C, LOC101928907, C2CD4A, C2CD4B, LOC107984784, GOLGA2P11, MIR8067, MIR6085, MGC15885, TLN2, MIR190A, TPM1, TPM1-AS, LACTB, RPS27L, RAB8B, APH1B, CA12, LINC02568, USP3, USP3-AS1, FBXL22, HERC1, MIR422A, DAPK2, LOC101928988, CIAO2A, SNX1, SNX22, PPIB, CSNK1G1, PCLAF, TRIP4, ZNF609, OAZ2, RBPMS2, MIR1272, PIF1, PLEKHO2, ANKDD1A, SPG21, MTFMT, SLC51B, RASL12, KBTBD13, UBAP1L, PDCD7, CLPX, CILP, PARP16, SNORA24B, IGDCC3, IGDCC4, DPP8, HACD3, INTS14, SLC24A1, DENND4A, SNORD13E, MIR4511, RAB11A, MEGF11, MIR4311, DIS3L, TIPIN, SCARNA14, MAP2K1, SNAPC5, MIR4512, RPL4, SNORD18C, SNORD18B, SNORD16, SNORD18A, ZWILCH, LCTL, LINC01169, SMAD6, LINC02206, LOC102723493, SMAD3, AAGAB, IQCH, IQCH-AS1, C15orf61, MAP2K5, SKOR1, LOC101929076, RNU6-2, PIAS1, CALML4, CLN6, FEM1B, ITGA11, CORO2B, ANP32A, MIR4312, ANP32A-IT1, MIR548H4, SPESP1, NOX5, EWSAT1, GLCE, PAQR5, LOC145694, KIF23, RPLP1, DRAIC, PCAT29, LINC00593, TLE3, MIR629, LINC02205, LINC02204, SALRNA3, SALRNA2, UACA, LARP6, LRRC49, THAP10, CT62, THSD4, THSD4-AS1, THSD4-AS2, NR2E3, MYO9A, SENP8, GRAMD2A, PKM, PARP6, CELF6, HEXA, HEXA-AS1, TMEM202, TMEM202-AS1, ARIH1, MIR630, LINC02259, GOLGA6B, HIGD2B, BBS4, ADPGK, ADPGK-AS1, NEO1, HCN4, REC114, NPTN, NPTN-IT1, CD276, INSYN1, INSYN1-AS1, TBC1D21, LOXL1-AS1, LOXL1, STOML1, PML, GOLGA6A, LOC283731, ISLR2, ISLR, STRA6, CCDC33, CYP11A1, PPIAP46, LINC02255, SEMA7A, MIR6881, UBL7, UBL7-AS1, ARID3B, CLK3, EDC3, CYP1A1, CYP1A2, CSK, MIR4513, LMAN1L, CPLX3, ULK3, MIR6882, SCAMP2, MPI, FAM219B, COX5A, RPP25, SCAMP5, PPCDC, C15orf39, LOC105376731, GOLGA6C, GOLGA6D, COMMD4, NEIL1, MIR631, MAN2C1, SIN3A, PTPN9, SNUPN, IMP3, SNX33, CSPG4, ODF3L1, DNM1P35, MIR4313, UBE2Q2, FBXO22, NRG4, TMEM266, LOC101929439, ETFA, TYRO3P, ISL2, SCAPER, MIR3713, RCN2, PSTPIP1, TSPAN3, PEAK1, LINC00597, HMG20A, LOC101929457, LINGO1, LINGO1-AS1, LINGO1-AS2, LOC645752, LOC91450, TBC1D2B, SH2D7, CIB2, IDH3A, ACSBG1, DNAJA4, WDR61, CRABP1, IREB2, HYKK, PSMA4, CHRNA5, CHRNA3, CHRNB4, LOC646938, ADAMTS7, MORF4L1, CTSH, RASGRF1, LOC100129540, ANKRD34C-AS1, MIR184, ANKRD34C, TMED3, KIAA1024, MTHFS, ST20-MTHFS, ST20, ST20-AS1, BCL2A1, ZFAND6, FAH, CTXND1, LINC00927, ARNT2, LOC101929586, MIR5572, ABHD17C, CEMIP, MIR549A, MESD, MIR4514, TLNRD1, CFAP161, IL16, STARD5, TMC3-AS1, TMC3, MEX3B, LINC01583, EFL1, SAXO2, ADAMTS7P1, GOLGA6L10, UBE2Q2P2, GOLGA6L9, GOLGA2P10, GOLGA6L17P, RPS17, LOC727751, LOC102724034, CPEB1, CPEB1-AS1, AP3B2, LOC338963, ACTG1P17, SNHG21, FSD2, SCARNA15, WHAMM, HOMER2, RAMAC, C15orf40, BTBD1, MIR4515, TM6SF1, HDGFL3, BNC1, SH3GL3, ADAMTSL3, EFL1P1, UBE2Q2L, LOC440300, GOLGA2P7, LOC642423, GOLGA6L4, LOC103171574, DNM1P41, GOLGA6L5P, UBE2Q2P1, LINC00933, ZSCAN2, SCAND2P, WDR73, NMB, SEC11A, ZNF592, ALPK3, SLC28A1, PDE8A, GOLGA6L3, MIR7706, AKAP13, LOC101929679, KLHL25, MIR1276, MIR548AP, AGBL1, LINC01584, AGBL1-AS1, LOC105370954, LOC102724452, LINC00052, NTRK3, NTRK3-AS1, MRPL46, MRPS11, DET1, LINC01586, MIR1179, MIR7-2, MIR3529, AEN, ISG20, ACAN, HAPLN3, MFGE8, ABHD2, RLBP1, FANCI, POLG, MIR6766, MIR9-3HG, MIR9-3, RHCG, LINC00928, TICRR, KIF7, PLIN1, PEX11A, WDR93, MESP1, MESP2, ANPEP, AP3S2, C15orf38-AP3S2, MIR5094, MIR5009, ARPIN, ZNF710, MIR3174, ZNF710-AS1, IDH2, IDH2-DT, SEMA4B, CIB1, GDPGP1, TTLL13P, NGRN, GABARAPL3, ZNF774, IQGAP1, CRTC3, CRTC3-AS1, LINC01585, BLM, FURIN, FES, MAN2A2, UNC45A, HDDC3, RCCD1, PRC1, PRC1-AS1, VPS33B, VPS33B-DT, SV2B, CRAT37, SLCO3A1, ST8SIA2, LOC104613533, C15orf32, LINC00930, FAM174B, ASB9P1, LINC01578, CHD2, MIR3175, RGMA, LINC02207, LINC01579, LINC01580, LINC01581, MCTP2, LOC440311, LINC01197, LINC00924, NR2F2-AS1, NR2F2, MIR1469, SPATA8-AS1, SPATA8, LINC02254, LOC101927310, LINC00923, ARRDC4, LINC02251, LINC01582, LINC02351, FAM169B, IRAIN, IGF1R, MIR4714, PGPEP1L, LUNAR1, SYNM, TTC23, LRRC28, HSP90B2P, MEF2A, LYSMD4, DNM1P46, LOC400464, ADAMTS17, SPATA41, CERS3-AS1, CERS3, PRKXP1, LOC102723335, LINS1, ASB7, ALDH1A3, LOC101927751, LRRK1, CHSY1, SELENOS, SNRPA1, PCSK6, LOC100507472, PCSK6-AS1, LINC02348, TM2D3, TARSL2, LOC100128108, OR4F6, OR4F15, OR4F13P	454	NBEAP1 (601889), POTEB (608912), TUBGCP5 (608147), CYFIP1 (606322), NIPA2 (608146), NIPA1 (608145), MKRN3 (603856), MAGEL2 (605283), NDN (602117), PWRN2 (611217), PWRN1 (611215), NPAP1 (610922), SNRPN (182279), SNHG14 (616259), PWAR5 (600162), SNORD116-1 (605436), IPW (601491), PWAR1 (600161), SNORD115-1 (609837), UBE3A (601623), ATP10A (605855), GABRB3 (137192), GABRA5 (137142), GABRG3 (600233), OCA2 (611409), HERC2 (605837), APBA2 (602712), NSMCE3 (608243), TJP1 (601009), CHRFAM7A (609756), ARHGAP11B (616310), FAN1 (613534), TRPM1 (603576), MIR211 (613753), KLF13 (605328), OTUD7A (612024), CHRNA7 (118511), ARHGAP11A (610589), SCG5 (173120), GREM1 (603054), FMN1 (136535), RYR3 (180903), AVEN (605265), CHRM5 (118496), KATNBL1 (616235), EMC4 (616245), SLC12A6 (604878), NOP10 (606471), NUTM1 (608963), LPCAT4 (612039), GOLGA8A (616180), GOLGA8B (609619), GJD2 (607058), ACTC1 (102540), AQR (610548), C15orf41 (615626), MEIS2 (601740), SPRED1 (609291), FAM98B (616142), RASGRP1 (603962), THBS1 (188060), FSIP1 (615795), GPR176 (612183), EIF2AK4 (609280), SRP14 (600708), BMF (606266), BUB1B (602860), PAK6 (608110), PLCB2 (604114), DISP2 (607503), KNSTRN (614718), IVD (607036), BAHD1 (613880), CHST14 (608429), KNL1 (609173), RAD51 (179617), RMDN3 (611873), GCHFR (602437), DNAJC17 (616844), PPP1R14D (613256), SPINT1 (605123), VPS18 (608551), DLL4 (605185), CHAC1 (614587), INO80 (610169), CHP1 (606988), OIP5 (606020), NUSAP1 (612818), NDUFAF1 (606934), RTF1 (611633), ITPKA (147521), LTK (151520), RPAP1 (611475), TYRO3 (600341), MGA (616061), MAPKBP1 (616786), PLA2G4B (606088), SPTBN5 (605916), EHD4 (605892), PLA2G4D (612864), VPS39 (612188), GANC (104180), CAPN3 (114240), SNAP23 (602534), HAUS2 (613429), STARD9 (614642), CDAN1 (607465), TTBK2 (611695), UBR1 (605981), CCNDBP1 (607089), EPB42 (177070), TGM5 (603805), TGM7 (606776), LCMT2 (611246), TUBGCP4 (609610), TP53BP1 (605230), MAP1A (600178), PPIP5K1 (610979), CKMT1B (123290), STRC (606440), CATSPER2 (607249), CKMT1A (613415), PDIA3 (602046), ELL3 (609885), SERF2 (605054), SERINC4 (614550), HYPK (612784), MFAP1 (600215), FRMD5 (616309), EIF3J (603910), SPG11 (610844), PATL2 (614661), B2M (109700), TRIM69 (616017), TERB2 (617131), SORD (182500), DUOX2 (606759), DUOXA2 (612772), DUOXA1 (612771), DUOX1 (606758), SHF (617313), SLC28A2 (606208), GATM (602360), C15orf48 (608409), SLC30A4 (602095), HMGN2P46 (611314), BLOC1S6 (604310), SQOR (617658), SEMA6D (609295), SLC24A5 (609802), SLC12A1 (600839), DUT (601266), FBN1 (134797), CEP152 (613529), SHC4 (617372), EID1 (605894), SECISBP2L (615756), COPS2 (604508), GALK2 (137028), FGF7 (148180), ATP8B4 (609123), SLC27A2 (603247), HDC (142704), GABPB1 (600610), USP8 (603158), TRPM7 (605692), SPPL2A (608238), AP4E1 (607244), TNFAIP8L3 (616438), CYP19A1 (107910), GLDN (608603), DMXL2 (612186), SCG3 (611796), TMOD2 (602928), TMOD3 (605112), LEO1 (610507), MAPK6 (602904), BCL2L10 (606910), GNB5 (604447), MYO5C (610022), MYO5A (160777), ARPP19 (605487), ONECUT1 (604164), WDR72 (613214), UNC13C (614568), RSL24D1 (613262), RAB27A (603868), PIGB (604122), CCPG1 (611326), DNAAF4 (608706), PYGO1 (606902), PRTG (613261), NEDD4 (602278), RFX7 (612660), MNS1 (610766), TCF12 (600480), CGNL1 (607856), MYZAP (614071), POLR2M (606485), ALDH1A2 (603687), AQP9 (602914), LIPC (151670), ADAM10 (602192), RNF111 (605840), CCNB2 (602755), MYO1E (601479), GCNT3 (606836), GTF2A2 (600519), BNIP2 (603292), ANXA2 (151740), ICE2 (610835), RORA (600825), VPS13C (608879), C2CD4A (610343), C2CD4B (610344), TLN2 (607349), MIR190A (615845), TPM1 (191010), LACTB (608440), RPS27L (612055), RAB8B (613532), APH1B (607630), CA12 (603263), USP3 (604728), FBXL22 (609088), HERC1 (605109), DAPK2 (616567), SNX1 (601272), PPIB (123841), CSNK1G1 (606274), PCLAF (610696), TRIP4 (604501), ZNF609 (617474), OAZ2 (604152), PIF1 (610953), SPG21 (608181), MTFMT (611766), SLC51B (612085), KBTBD13 (613727), PDCD7 (608138), CLPX (615611), CILP (603489), IGDCC3 (604184), IGDCC4 (616810), DPP8 (606819), HACD3 (615940), SLC24A1 (603617), DENND4A (600382), RAB11A (605570), MEGF11 (612454), DIS3L (614183), TIPIN (610716), MAP2K1 (176872), SNAPC5 (605979), RPL4 (180479), ZWILCH (609984), LCTL (617060), SMAD6 (602931), SMAD3 (603109), AAGAB (614888), IQCH (612523), MAP2K5 (602520), SKOR1 (611273), PIAS1 (603566), CLN6 (606725), FEM1B (613539), ITGA11 (604789), CORO2B (605002), ANP32A (600832), SPESP1 (609399), NOX5 (606572), EWSAT1 (616492), GLCE (612134), PAQR5 (607781), KIF23 (605064), RPLP1 (180520), DRAIC (616387), PCAT29 (616273), TLE3 (600190), UACA (612516), LARP6 (611300), THAP10 (612538), THSD4 (614476), NR2E3 (604485), MYO9A (604875), SENP8 (608659), PKM (179050), CELF6 (612681), HEXA (606869), ARIH1 (605624), BBS4 (600374), ADPGK (611861), NEO1 (601907), HCN4 (605206), NPTN (612820), NPTN-IT1 (615176), CD276 (605715), INSYN1 (617128), LOXL1-AS1 (616800), LOXL1 (153456), STOML1 (608326), PML (102578), GOLGA6A (610288), ISLR2 (614179), ISLR (602059), STRA6 (610745), CYP11A1 (118485), SEMA7A (607961), UBL7 (609748), ARID3B (612457), CLK3 (602990), EDC3 (609842), CYP1A1 (108330), CYP1A2 (124060), CSK (124095), LMAN1L (609548), CPLX3 (609585), ULK3 (613472), SCAMP2 (606912), MPI (154550), COX5A (603773), SCAMP5 (613766), PPCDC (609854), COMMD4 (616701), NEIL1 (608844), MAN2C1 (154580), SIN3A (607776), PTPN9 (600768), SNUPN (607902), IMP3 (612980), CSPG4 (601172), UBE2Q2 (612501), FBXO22 (609096), NRG4 (610894), ETFA (608053), ISL2 (609481), SCAPER (611611), RCN2 (602584), PSTPIP1 (606347), TSPAN3 (613134), PEAK1 (614248), HMG20A (605534), LINGO1 (609791), CIB2 (605564), IDH3A (601149), ACSBG1 (614362), WDR61 (609540), CRABP1 (180230), IREB2 (147582), HYKK (614681), PSMA4 (176846), CHRNA5 (118505), CHRNA3 (118503), CHRNB4 (118509), ADAMTS7 (605009), MORF4L1 (607303), CTSH (116820), RASGRF1 (606600), MIR184 (613146), MTHFS (604197), BCL2A1 (601056), ZFAND6 (610183), FAH (613871), ARNT2 (606036), ABHD17C (617944), CEMIP (608366), MESD (607783), TLNRD1 (615466), IL16 (603035), STARD5 (607050), TMC3 (617196), MEX3B (611008), EFL1 (617538), RPS17 (180472), CPEB1 (607342), AP3B2 (602166), SCARNA15 (612675), WHAMM (612393), HOMER2 (604799), RAMAC (614547), BTBD1 (608530), TM6SF1 (606562), HDGFL3 (616643), BNC1 (601930), SH3GL3 (603362), ADAMTSL3 (609199), SCAND2P (610417), WDR73 (616144), NMB (162340), ZNF592 (613624), ALPK3 (617608), SLC28A1 (606207), PDE8A (602972), AKAP13 (604686), AGBL1 (615496), NTRK3 (191316), MRPL46 (611851), MRPS11 (611977), DET1 (608727), AEN (610177), ISG20 (604533), ACAN (155760), MFGE8 (602281), ABHD2 (612196), RLBP1 (180090), FANCI (611360), POLG (174763), MIR9-3 (611188), RHCG (605381), TICRR (613298), KIF7 (611254), PLIN1 (170290), PEX11A (603866), MESP1 (608689), MESP2 (605195), ANPEP (151530), AP3S2 (602416), ARPIN (615543), IDH2 (147650), SEMA4B (617029), CIB1 (602293), NGRN (616718), IQGAP1 (603379), CRTC3 (608986), BLM (604610), FURIN (136950), FES (190030), MAN2A2 (600988), UNC45A (611219), RCCD1 (617997), PRC1 (603484), VPS33B (608552), SV2B (185861), SLCO3A1 (612435), ST8SIA2 (602546), CHD2 (602119), RGMA (607362), MCTP2 (616297), NR2F2 (107773), SPATA8 (613948), IGF1R (147370), SYNM (606087), MEF2A (600660), ADAMTS17 (607511), CERS3 (615276), LINS1 (610350), ASB7 (615052), ALDH1A3 (600463), LRRK1 (610986), CHSY1 (608183), SELENOS (607918), SNRPA1 (603521), PCSK6 (167405), TM2D3 (610014)	CytoRegions Not Set			CLEMENTS:Sophie	true	arr[hg19] 15q11.1q26.3(20,161,371-102,397,317)x1-2	chr15:20161371-102397317
LST.OSCHP	1.67	Loss	X	p22.33	3928.341	264	25	DHRSX, ZBED1, MIR6089, CD99P1, LINC00102, CD99, XG, XGY2, GYG2, ARSD, ARSD-AS1, ARSE, ARSH, ARSF, LINC01546, MXRA5, SNORA48B, PRKX, PRKX-AS1, LOC389906, FAM239B, FAM239A, LOC101928201, NLGN4X, LOC105373156	12	ZBED1 (300178), CD99 (313470), CD99 (450000), XG (300879), GYG2 (300198), ARSD (300002), ARSE (300180), ARSH (300586), ARSF (300003), MXRA5 (300938), PRKX (300083), NLGN4X (300427)	CytoRegions Not Set				false	arr[hg19] Xp22.33p22.31(2,348,235-6,276,576)x1-2	chrX:2348235-6276576
LST.OSCHP	1.67	Loss	X	p21.2	7243.888	567	23	DMD, MIR3915, MIR548F5, FAM47A, TMEM47, FAM47B, MAGEB16, CFAP47, LOC101928627, FAM47C, FTH1P18, PRRG1, LANCL3, XK, CYBB, DYNLT3, HYPM, SYTL5, MIR548AJ2, SRPX, RPGR, OTC, TSPAN7	11	DMD (300377), TMEM47 (300698), MAGEB16 (300762), PRRG1 (300935), XK (314850), CYBB (300481), DYNLT3 (300302), SRPX (300187), RPGR (312610), OTC (300461), TSPAN7 (300096)	CytoRegions Not Set			CLEMENTS:Sophie	true	arr[hg19] Xp21.2p11.4(31,289,620-38,533,508)x1-2	chrX:31289620-38533508
LST.OSCHP	1.67	Loss	18	q12.1	22479.216	1772	124	DSC3, DSC2, DSCAS, DSC1, DSG1, DSG1-AS1, DSG4, DSG3, DSG2, DSG2-AS1, TTR, B4GALT6, SLC25A52, TRAPPC8, RNF125, RNF138, MEP1B, GAREM1, WBP11P1, KLHL14, CCDC178, ASXL3, NOL4, DTNA, MAPRE2, ZNF397, ZSCAN30, ZNF271P, ZNF24, ZNF396, INO80C, MIR3975, GALNT1, MIR187, MIR3929, C18orf21, RPRD1A, SLC39A6, ELP2, LOC101927809, MOCOS, FHOD3, LOC105372071, TPGS2, KIAA1328, LOC105372069, CELF4, LOC105372068, SNORA111, MIR4318, MIR924HG, MIR924, MIR5583-2, MIR5583-1, LINC01902, LINC01477, KC6, PIK3C3, LINC00907, RIT2, SYT4, LINC01478, LINC01601, SETBP1, MIR4319, SLC14A2, SLC14A2-AS1, SLC14A1, SIGLEC15, EPG5, PSTPIP2, ATP5F1A, HAUS1, C18orf25, RNF165, LOXHD1, ST8SIA5, PIAS2, KATNAL2, ELOA3C, ELOA3D, ELOA3B, ELOA3, ELOA2, HDHD2, IER3IP1, SKOR2, MIR4527HG, MIR4527, SMAD2, ZBTB7C, C18orf12, CTIF, MIR4743, SMAD7, LOC100129878, DYM, MIR4744, C18orf32, RPL17-C18orf32, MIR1539, RPL17, SNORD58C, SNORD58A, SNORD58B, LIPG, ACAA2, SCARNA17, SNHG22, MYO5B, MIR4320, CFAP53, MBD1, CXXC1, SKA1, MAPK4, MRO, ME2, ELAC1, SMAD4, MEX3C, LINC01630, DCC, MIR4528	71	DSC3 (600271), DSC2 (125645), DSC1 (125643), DSG1 (125670), DSG4 (607892), DSG3 (169615), DSG2 (125671), TTR (176300), B4GALT6 (604017), SLC25A52 (616153), TRAPPC8 (614136), RNF125 (610432), RNF138 (616319), MEP1B (600389), GAREM1 (617998), KLHL14 (613772), ASXL3 (615115), NOL4 (603577), DTNA (601239), MAPRE2 (605789), ZNF397 (609601), ZNF271P (604754), ZNF24 (194534), ZNF396 (609600), GALNT1 (602273), MIR187 (612698), RPRD1A (610347), SLC39A6 (608731), ELP2 (616054), MOCOS (613274), FHOD3 (609691), KIAA1328 (616480), CELF4 (612679), PIK3C3 (602609), RIT2 (609592), SYT4 (600103), SETBP1 (611060), SLC14A2 (601611), SLC14A1 (613868), EPG5 (615068), PSTPIP2 (616046), ATP5F1A (164360), HAUS1 (608775), LOXHD1 (613072), ST8SIA5 (607162), PIAS2 (603567), KATNAL2 (614697), ELOA2 (609522), IER3IP1 (609382), SKOR2 (617138), SMAD2 (601366), ZBTB7C (616591), CTIF (613178), SMAD7 (602932), DYM (607461), RPL17 (603661), LIPG (603684), ACAA2 (604770), SCARNA17 (615645), MYO5B (606540), CFAP53 (614759), MBD1 (156535), CXXC1 (609150), SKA1 (616673), MAPK4 (176949), MRO (608080), ME2 (154270), ELAC1 (608079), SMAD4 (600993), MEX3C (611005), DCC (120470)	CytoRegions Not Set				false	arr[hg19] 18q12.1q21.2(28,542,992-51,022,208)x1-2	chr18:28542992-51022208
LST.OSCHP	1.67	Loss	18	p11.31	6586.982	459	44	EPB41L3, MIR3976HG, MIR3976, TMEM200C, L3MBTL4, L3MBTL4-AS1, MIR4317, LINC01387, LOC101927168, ARHGAP28, LINC00668, LAMA1, LOC101927188, LRRC30, PTPRM, LOC100192426, RAB12, GACAT2, MTCL1, NDUFV2, NDUFV2-AS1, ANKRD12, TWSG1, RALBP1, PPP4R1, PPP4R1-AS1, RAB31, TXNDC2, VAPA, LINC01254, APCDD1, NAPG, LINC01887, LOC101927410, PIEZO2, MIR6788, LINC01928, LINC01255, SLC35G4, MIR7153, GNAL, CHMP1B, MPPE1, IMPA2	23	EPB41L3 (605331), L3MBTL4 (617135), ARHGAP28 (610592), LAMA1 (150320), PTPRM (176888), RAB12 (616448), GACAT2 (616131), MTCL1 (615766), NDUFV2 (600532), ANKRD12 (610616), TWSG1 (605049), RALBP1 (605801), PPP4R1 (604908), RAB31 (605694), TXNDC2 (617790), VAPA (605703), APCDD1 (607479), NAPG (603216), PIEZO2 (613629), GNAL (139312), CHMP1B (606486), MPPE1 (611900), IMPA2 (605922)	CytoRegions Not Set				false	arr[hg19] 18p11.31p11.21(5,456,773-12,043,755)x1-2	chr18:5456773-12043755
LST.OSCHP	1.67	Loss	3	p14.2	20297.727	1936	82	FHIT, MIR548BB, PTPRG, PTPRG-AS1, C3orf14, FEZF2, CADPS, LINC00698, SYNPR, SYNPR-AS1, SNTN, C3orf49, THOC7, THOC7-AS1, ATXN7, SCAANT1, PSMD6-AS2, PSMD6, PRICKLE2-AS1, LINC00994, PRICKLE2, PRICKLE2-AS2, PRICKLE2-AS3, ADAMTS9, ADAMTS9-AS1, ADAMTS9-AS2, MAGI1, MAGI1-IT1, MAGI1-AS1, SLC25A26, LRIG1, LOC105377143, KBTBD8, MIR4272, SUCLG2, SUCLG2-AS1, FAM19A1, LOC105377146, FAM19A4, EOGT, TMF1, MIR3136, UBA3, ARL6IP5, LMOD3, FRMD4B, MITF, SAMMSON, FOXP1, FOXP1-AS1, MIR1284, EIF4E3, GPR27, PROK2, LINC00877, LINC00870, RYBP, LOC105377162, SHQ1, GXYLT2, PPP4R2, EBLN2, PDZRN3, LOC101927296, PDZRN3-AS1, LINC02005, CNTN3, MIR4444-2, MIR4444-1, FAM86DP, LINC02018, MIR1324, FRG2C, FRG2EP, LINC00960, ZNF717, MIR4273, ROBO2, LINC02077, ROBO1, LOC101927374, MIR3923	39	FHIT (601153), PTPRG (176886), FEZF2 (607414), CADPS (604667), SNTN (617832), THOC7 (611965), ATXN7 (607640), SCAANT1 (614481), PSMD6 (617857), PRICKLE2 (608501), ADAMTS9 (605421), MAGI1 (602625), SLC25A26 (611037), LRIG1 (608868), KBTBD8 (616607), SUCLG2 (603922), FAM19A1 (617495), FAM19A4 (617498), EOGT (614789), TMF1 (601126), UBA3 (603172), ARL6IP5 (605709), LMOD3 (616112), FRMD4B (617467), MITF (156845), SAMMSON (616895), FOXP1 (605515), EIF4E3 (609896), GPR27 (605187), PROK2 (607002), RYBP (607535), SHQ1 (613663), GXYLT2 (613322), PPP4R2 (613822), EBLN2 (613250), PDZRN3 (609729), CNTN3 (601325), ROBO2 (602431), ROBO1 (602430)	CytoRegions Not Set				false	arr[hg19] 3p14.2p12.2(59,911,565-80,209,292)x1-2	chr3:59911565-80209292
LST.OSCHP	1.67	Loss	X	p11.4	11494.12	915	152	LINC01281, LINC01282, MIR3937, BCOR, LOC101927476, ATP6AP2, MPC1L, CXorf38, MED14, MED14OS, LOC100132831, USP9X, LOC105373185, DDX3X, NYX, CASK, GPR34, GPR82, PPP1R2C, PINCR, MAOA, MAOB, NDP, NDP-AS1, EFHC2, FUNDC1, DUSP21, KDM6A, CXorf36, LINC01204, LOC392452, MIR221, MIR222, LOC401585, LINC01186, KRBOX4, ZNF674, ZNF674-AS1, CHST7, SLC9A7, RP2, LINC01545, JADE3, RGN, NDUFB11, RBM10, UBA1, INE1, CDK16, USP11, ZNF157, SNORA11C, ZNF41, LINC01560, ARAF, SYN1, TIMP1, MIR4769, CFP, ELK1, UXT, UXT-AS1, CXXC1P1, ZNF81, ZNF182, SPACA5, SPACA5B, ZNF630-AS1, ZNF630, SSX6P, SSX5, SSX1, SSX9P, SSX3, SSX4B, SSX4, SLC38A5, FTSJ1, LOC101927635, PORCN, EBP, TBC1D25, RBM3, WDR13, WAS, SUV39H1, GLOD5, GATA1, HDAC6, ERAS, PCSK1N, TIMM17B, PQBP1, SLC35A2, PIM2, OTUD5, KCND1, GRIPAP1, TFE3, CCDC120, PRAF2, WDR45, GPKOW, MAGIX, PLP2, PRICKLE3, SYP, SYP-AS1, CACNA1F, CCDC22, FOXP3, FLICR, PPP1R3F, GAGE10, GAGE12J, GAGE12G, GAGE2E, GAGE13, GAGE8, GAGE2D, GAGE2A, GAGE2C, GAGE4, GAGE7, GAGE5, GAGE12I, GAGE2B, GAGE12F, GAGE12D, GAGE12C, GAGE12H, GAGE12E, GAGE12B, GAGE6, GAGE1, PAGE1, PAGE4, USP27X-AS1, USP27X, CLCN5, MIR532, MIR188, MIR500A, MIR362, MIR501, MIR500B, MIR660, MIR502, AKAP4, CCNB3, DGKK, SHROOM4	111	BCOR (300485), ATP6AP2 (300556), MED14 (300182), USP9X (300072), DDX3X (300160), NYX (300278), CASK (300172), GPR34 (300241), GPR82 (300748), MAOA (309850), MAOB (309860), NDP (300658), EFHC2 (300817), FUNDC1 (300871), DUSP21 (300678), KDM6A (300128), CXorf36 (300959), MIR221 (300568), MIR222 (300569), KRBOX4 (300585), ZNF674 (300573), CHST7 (300375), SLC9A7 (300368), RP2 (300757), JADE3 (300618), RGN (300212), NDUFB11 (300403), RBM10 (300080), UBA1 (314370), INE1 (300164), CDK16 (311550), USP11 (300050), ZNF157 (300024), ZNF41 (314995), ARAF (311010), SYN1 (313440), TIMP1 (305370), CFP (300383), ELK1 (311040), UXT (300234), ZNF81 (314998), ZNF182 (314993), SPACA5 (300593), ZNF630 (300819), SSX6P (300541), SSX5 (300327), SSX1 (312820), SSX9P (300544), SSX3 (300325), SSX4 (300326), SLC38A5 (300649), FTSJ1 (300499), PORCN (300651), EBP (300205), TBC1D25 (311240), RBM3 (300027), WDR13 (300512), WAS (300392), SUV39H1 (300254), GATA1 (305371), HDAC6 (300272), ERAS (300437), PCSK1N (300399), TIMM17B (300249), PQBP1 (300463), SLC35A2 (314375), PIM2 (300295), OTUD5 (300713), KCND1 (300281), GRIPAP1 (300408), TFE3 (314310), CCDC120 (300947), PRAF2 (300840), WDR45 (300526), GPKOW (301003), PLP2 (300112), PRICKLE3 (300111), SYP (313475), CACNA1F (300110), CCDC22 (300859), FOXP3 (300292), GAGE10 (300737), GAGE12J (300733), GAGE12G (300731), GAGE2E (300736), GAGE13 (300734), GAGE8 (300638), GAGE2D (300735), GAGE2A (300720), GAGE2C (300595), GAGE4 (300597), GAGE7 (300601), GAGE5 (300598), GAGE2B (300726), GAGE12H (300732), GAGE12F (300730), GAGE12D (300728), GAGE12E (300729), GAGE12C (300727), GAGE6 (300599), GAGE12I (300637), GAGE1 (300594), PAGE1 (300288), PAGE4 (300287), USP27X (300975), CLCN5 (300008), MIR502 (300893), AKAP4 (300185), CCNB3 (300456), DGKK (300837), SHROOM4 (300579)	CytoRegions Not Set				true	arr[hg19] Xp11.4p11.22(38,956,505-50,450,625)x1-2	chrX:38956505-50450625
LST.OSCHP	1.67	Loss	2	q14.3	53692.286	4378	281	LINC01826, LOC107985820, CNTNAP5, LINC01941, GYPC, TEX51, BIN1, CYP27C1, ERCC3, MAP3K2, PROC, MIR4783, IWS1, MYO7B, LOC105373609, LIMS2, GPR17, SFT2D3, WDR33, POLR2D, AMMECR1L, SAP130, UGGT1, HS6ST1, LOC101927881, LINC01854, LINC02572, PLAC9P1, LINC01856, RAB6C-AS1, RAB6C, FAR2P1, POTEF, MED15P9, CCDC74B, SMPD4, MZT2B, TUBA3E, CCDC115, IMP4, PTPN18, FAR2P2, CYP4F62P, POTEI, CFC1B, PRSS40A, PRSS40B, CFC1, POTEJ, CYP4F30P, GPR148, AMER3, ARHGEF4, FAM168B, PLEKHB2, POTEE, LOC440910, RAB6D, LINC01120, NOC2LP2, TUBA3D, MZT2A, MIR4784, LOC150776, CCDC74A, POTEKP, LINC01087, C2orf27A, C2orf27B, LINC01945, ANKRD30BL, MIR663B, ZNF806, FAM201B, GPR39, LYPD1, NCKAP5, LOC101928185, LOC101928161, MIR3679, MGAT5, TMEM163, ACMSD, MIR5590, CCNT2-AS1, CCNT2, MAP3K19, RAB3GAP1, SNORA40B, ZRANB3, R3HDM1, MIR128-1, UBXN4, LCT, LOC100507600, MCM6, DARS, DARS-AS1, CXCR4, THSD7B, LOC101928273, HNMT, LINC01832, SPOPL, NXPH2, YY1P2, LRP1B, MIR7157, KYNU, ARHGAP15, LOC101928386, GTDC1, ZEB2, ZEB2-AS1, LINC01412, LOC105373656, TEX41, PABPC1P2, ACVR2A, ORC4, MBD5, EPC2, KIF5C, LYPD6B, LYPD6, MMADHC, LOC101929231, LINC01931, LINC01817, RND3, LINC01920, LOC101929282, RBM43, NMI, LOC101929319, TNFAIP6, MIR4773-1, MIR4773-2, RIF1, NEB, ARL5A, CACNB4, STAM2, FMNL2, PRPF40A, ARL6IP6, RPRM, GALNT13, LOC100144595, KCNJ3, LINC01876, NR4A2, FLJ46875, GPD2, GALNT5, ERMN, CYTIP, ACVR1C, ACVR1, UPP2, CCDC148-AS1, CCDC148, PKP4, PKP4-AS1, DAPL1, TANC1, MIR6888, WDSUB1, BAZ2B, LOC643072, MARCH7, CD302, LY75-CD302, LY75, PLA2R1, ITGB6, LINC02478, RBMS1, MIR4785, TANK, LOC101929512, LINC01806, PSMD14, TBR1, AHCTF1P1, SLC4A10, DPP4, LOC100131604, LOC101929532, GCG, FAP, IFIH1, GCA, KCNH7, LOC101929570, FIGN, GRB14, COBLL1, SNORA70F, LOC101929633, SLC38A11, SCN3A, SCN2A, CSRNP3, GALNT3, LOC100506124, TTC21B, TTC21B-AS1, LOC102724058, SCN1A, LOC101929680, SCN9A, SCN7A, XIRP2, XIRP2-AS1, LOC105616981, B3GALT1, STK39, CERS6, MIR4774, CERS6-AS1, NOSTRIN, SPC25, G6PC2, ABCB11, DHRS9, LRP2, BBS5, KLHL41, FASTKD1, PPIG, CCDC173, PHOSPHO2-KLHL23, PHOSPHO2, KLHL23, SSB, METTL5, SNORD3K, UBR3, MYO3B, LOC101929753, LOC101926913, LINC01124, SP5, ERICH2, GAD1, GORASP2, TLK1, METTL8, DCAF17, CYBRD1, DYNC1I2, SLC25A12, HAT1, METAP1D, DLX1, DLX2, DLX2-DT, ITGA6, PDK1, RAPGEF4-AS1, RAPGEF4, MAP3K20, MAP3K20-AS1, CDCA7, SP3, LINC01960, OLA1, LINC01305, SP9, CIR1, SCRN3, GPR155, RNU6-2, WIPF1, CHRNA1, CHN1, ATF2, MIR933, ATP5MC3, LNPK	150	CNTNAP5 (610519), GYPC (110750), BIN1 (601248), ERCC3 (133510), MAP3K2 (609487), PROC (612283), MYO7B (606541), LIMS2 (607908), GPR17 (603071), POLR2D (606017), SAP130 (609697), UGGT1 (605897), HS6ST1 (604846), RAB6C (612909), SMPD4 (610457), MZT2B (613450), CCDC115 (613734), IMP4 (612981), PTPN18 (606587), CFC1 (605194), ARHGEF4 (605216), POTEE (608914), TUBA3D (617878), MZT2A (613449), POTEKP (611266), GPR39 (602886), LYPD1 (610450), NCKAP5 (608789), MGAT5 (601774), ACMSD (608889), CCNT2 (603862), RAB3GAP1 (602536), ZRANB3 (615655), MIR128-1 (611774), UBXN4 (611216), LCT (603202), MCM6 (601806), DARS (603084), CXCR4 (162643), HNMT (605238), NXPH2 (604635), LRP1B (608766), KYNU (605197), ARHGAP15 (610578), GTDC1 (610165), ZEB2 (605802), ACVR2A (102581), ORC4 (603056), MBD5 (611472), EPC2 (611000), KIF5C (604593), LYPD6 (613359), MMADHC (611935), RND3 (602924), NMI (603525), TNFAIP6 (600410), RIF1 (608952), NEB (161650), ARL5A (608960), CACNB4 (601949), STAM2 (606244), FMNL2 (616285), PRPF40A (612941), ARL6IP6 (616495), RPRM (612171), GALNT13 (608369), KCNJ3 (601534), NR4A2 (601828), GPD2 (138430), GALNT5 (615129), ERMN (610072), CYTIP (604448), ACVR1C (608981), ACVR1 (102576), UPP2 (617340), PKP4 (604276), TANC1 (611397), BAZ2B (605683), MARCH7 (613334), CD302 (612246), LY75 (604524), PLA2R1 (604939), ITGB6 (147558), RBMS1 (602310), TANK (603893), PSMD14 (607173), TBR1 (604616), SLC4A10 (605556), DPP4 (102720), GCG (138030), FAP (600403), IFIH1 (606951), GCA (607030), KCNH7 (608169), FIGN (605295), GRB14 (601524), COBLL1 (610318), SLC38A11 (616526), SCN3A (182391), SCN2A (182390), GALNT3 (601756), TTC21B (612014), SCN1A (182389), SCN9A (603415), SCN7A (182392), XIRP2 (609778), B3GALT1 (603093), STK39 (607648), CERS6 (615336), NOSTRIN (607496), SPC25 (609395), G6PC2 (608058), ABCB11 (603201), DHRS9 (612131), LRP2 (600073), BBS5 (603650), KLHL41 (607701), FASTKD1 (617529), PPIG (606093), SSB (109090), UBR3 (613831), MYO3B (610040), SP5 (609391), GAD1 (605363), GORASP2 (608693), TLK1 (608438), METTL8 (609525), DCAF17 (612515), CYBRD1 (605745), DYNC1I2 (603331), SLC25A12 (603667), HAT1 (603053), METAP1D (610267), DLX1 (600029), DLX2 (126255), ITGA6 (147556), PDK1 (602524), RAPGEF4 (606058), MAP3K20 (609479), CDCA7 (609937), SP3 (601804), OLA1 (611175), CIR1 (605228), SCRN3 (614967), WIPF1 (602357), CHRNA1 (100690), CHN1 (118423), ATF2 (123811), ATP5MC3 (602736), LNPK (610236)	CytoRegions Not Set				false	arr[hg19] 2q14.3q31.1(123,248,749-176,941,035)x1-2	chr2:123248749-176941035
LST.OSCHP	1.67	Loss	5	q23.1	34597.382	2495	394	LINC02147, LINC02148, LINC02208, LINC02215, DTWD2, MIR1244-1, MIR1244-3, MIR1244-2, MIR1244-4, LOC105379143, DMXL1, MIR5706, TNFAIP8, HSD17B4, FAM170A, PRR16, LOC102467226, FTMT, SRFBP1, LOX, ZNF474, LOC100505841, SNCAIP, MGC32805, LOC101927357, LINC02201, SNX2, SNX24, PPIC, LOC105379152, PRDM6, CEP120, CSNK1G3, LINC01170, ZNF608, LOC101927421, LINC02240, LINC02039, LOC101927488, GRAMD2B, ALDH7A1, PHAX, TEX43, LMNB1-DT, LMNB1, MARCH3, C5orf63, MEGF10, PRRC1, CTXN3, CCDC192, LINC01184, SLC12A2, FBN2, SLC27A6, ISOC1, MIR4633, MIR4460, ADAMTS19-AS1, ADAMTS19, KIAA1024L, CHSY3, HINT1, LYRM7, CDC42SE2, RAPGEF6, FNIP1, MEIKIN, ACSL6, IL3, CSF2, P4HA2-AS1, P4HA2, MIR6830, PDLIM4, SLC22A4, MIR3936HG, MIR3936, SLC22A5, C5orf56, IRF1, IL5, RAD50, TH2LCRR, IL13, IL4, LOC105379176, KIF3A, CCNI2, SEPT8, SOWAHA, SHROOM1, GDF9, UQCRQ, LEAP2, AFF4, ZCCHC10, HSPA4, FSTL4, MIR1289-2, WSPAR, C5orf15, LOC105379183, VDAC1, TCF7, SKP1, PPP2CA, MIR3661, CDKL3, UBE2B, CDKN2AIPNL, LOC102546229, LINC01843, JADE2, SAR1B, SEC24A, CAMLG, DDX46, C5orf24, TXNDC15, PCBD2, CATSPER3, PITX1, C5orf66, C5orf66-AS1, C5orf66-AS2, H2AFY, DCANP1, TIFAB, NEUROG1, CXCL14, SLC25A48, LINC01959, MIR5692C1, IL9, FBXL21, LECT2, TGFBI, VTRNA2-1, SMAD5-AS1, SMAD5, SMIM32, TRPC7, TRPC7-AS2, MIR4454, SPOCK1, LOC105379192, KLHL3, MIR874, HNRNPA0, NPY6R, MYOT, PKD2L2, FAM13B, LOC100130172, WNT8A, NME5, BRD8, KIF20A, CDC23, GFRA3, CDC25C, LOC100128966, FAM53C, KDM3B, REEP2, EGR1, ETF1, HSPA9, SNORD63B, SNORD63, LOC105379194, CTNNA1, LRRTM2, SIL1, SNHG4, MATR3, SNORA74D, SNORA74A, PAIP2, SLC23A1, MZB1, PROB1, SPATA24, DNAJC18, ECSCR, TMEM173, UBE2D2, CXXC5, CXXC5-AS1, PSD2-AS1, PSD2, NRG2, MALINC1, PURA, IGIP, LOC101929719, CYSTM1, PFDN1, HBEGF, SLC4A9, ANKHD1, ANKHD1-EIF4EBP3, EIF4EBP3, SRA1, APBB3, MIR6831, SLC35A4, CD14, TMCO6, NDUFA2, IK, MIR3655, WDR55, DND1, HARS, HARS2, ZMAT2, VTRNA1-1, VTRNA1-2, VTRNA1-3, PCDHA1, PCDHA2, PCDHA3, PCDHA4, PCDHA5, PCDHA6, PCDHA7, PCDHA8, PCDHA9, PCDHA10, PCDHA11, PCDHA12, PCDHA13, PCDHAC1, PCDHAC2, LOC101926905, PCDHB1, PCDHB2, PCDHB3, PCDHB4, PCDHB5, PCDHB6, PCDHB17P, PCDHB7, PCDHB8, PCDHB16, PCDHB9, PCDHB10, PCDHB11, PCDHB12, PCDHB13, PCDHB14, PCDHB18P, PCDHB19P, PCDHB15, SLC25A2, TAF7, PCDHGA1, PCDHGA2, PCDHGA3, PCDHGB1, PCDHGA4, PCDHGB2, PCDHGA5, PCDHGB3, PCDHGA6, PCDHGA7, PCDHGB4, PCDHGA8, PCDHGB5, PCDHGA9, PCDHGB6, PCDHGA10, PCDHGB7, PCDHGA11, PCDHGB8P, PCDHGA12, PCDHGC3, PCDHGC4, PCDHGC5, DIAPH1, LOC100505658, HDAC3, RELL2, FCHSD1, ARAP3, PCDH1, LOC729080, DELE1, PCDH12, RNF14, GNPDA1, NDFIP1, SPRY4, SPRY4-IT1, SPRY4-AS1, FGF1, LINC01844, ARHGAP26, ARHGAP26-AS1, ARHGAP26-IT1, NR3C1, MIR5197, HMHB1, YIPF5, KCTD16, PRELID2, GRXCR2, SH3RF2, PLAC8L1, LARS, RBM27, POU4F3, TCERG1, GPR151, PPP2R2B, PPP2R2B-IT1, STK32A-AS1, STK32A, DPYSL3, JAKMIP2-AS1, JAKMIP2, SPINK1, SCGB3A2, C5orf46, SPINK5, SPINK14, SPINK6, MARCOL, LOC102546294, SPINK13, SPINK7, SPINK9, FBXO38, HTR4, ADRB2, SH3TC2, SH3TC2-DT, ABLIM3, AFAP1L1, GRPEL2, GRPEL2-AS1, PCYOX1L, IL17B, CARMN, MIR143, MIR145, CSNK1A1, ARHGEF37, PPARGC1B, MIR378A, PDE6A, LOC644762, SLC26A2, TIGD6, HMGXB3, CSF1R, PDGFRB, CDX1, SLC6A7, CAMK2A, ARSI, TCOF1, CD74, RPS14, NDST1-AS1, NDST1, SYNPO, MYOZ3, RBM22, DCTN4, SMIM3, IRGM, ZNF300, ZNF300P1, GPX3, TNIP1, ANXA6, CCDC69, GM2A, SLC36A3, SLC36A2, SLC36A1, FAT2, MIR6499, SPARC, CLMAT3, ATOX1, LOC100652758, G3BP1, GLRA1, LINC01933, NMUR2	258	DMXL1 (605671), TNFAIP8 (612111), HSD17B4 (601860), PRR16 (615931), FTMT (608847), SRFBP1 (610479), LOX (153455), SNCAIP (603779), SNX2 (605929), PPIC (123842), PRDM6 (616982), CEP120 (613446), CSNK1G3 (604253), ALDH7A1 (107323), PHAX (604924), LMNB1 (150340), MARCH3 (613333), MEGF10 (612453), SLC12A2 (600840), FBN2 (612570), SLC27A6 (604196), ADAMTS19 (607513), CHSY3 (609963), HINT1 (601314), LYRM7 (615831), RAPGEF6 (610499), FNIP1 (610594), MEIKIN (616232), ACSL6 (604443), IL3 (147740), CSF2 (138960), P4HA2 (600608), PDLIM4 (603422), SLC22A4 (604190), SLC22A5 (603377), IRF1 (147575), IL5 (147850), RAD50 (604040), IL13 (147683), IL4 (147780), KIF3A (604683), SEPT8 (608418), SHROOM1 (611179), GDF9 (601918), UQCRQ (612080), LEAP2 (611373), AFF4 (604417), HSPA4 (601113), WSPAR (616333), VDAC1 (604492), TCF7 (189908), SKP1 (601434), PPP2CA (176915), CDKL3 (608459), UBE2B (179095), JADE2 (610515), SAR1B (607690), SEC24A (607183), CAMLG (601118), DDX46 (617848), TXNDC15 (617778), PCBD2 (609836), CATSPER3 (609120), PITX1 (602149), H2AFY (610054), DCANP1 (609710), TIFAB (612663), NEUROG1 (601726), CXCL14 (604186), SLC25A48 (616150), IL9 (146931), FBXL21 (609087), LECT2 (602882), TGFBI (601692), VTRNA2-1 (614938), SMAD5 (603110), SPOCK1 (602264), KLHL3 (605775), HNRNPA0 (609409), NPY6R (601770), MYOT (604103), PKD2L2 (604669), FAM13B (609371), WNT8A (606360), NME5 (603575), BRD8 (602848), KIF20A (605664), CDC23 (603462), GFRA3 (605710), CDC25C (157680), FAM53C (609372), KDM3B (609373), REEP2 (609347), EGR1 (128990), ETF1 (600285), HSPA9 (600548), CTNNA1 (116805), LRRTM2 (610868), SIL1 (608005), MATR3 (164015), PAIP2 (605604), SLC23A1 (603790), MZB1 (609447), ECSCR (615736), TMEM173 (612374), UBE2D2 (602962), CXXC5 (612752), NRG2 (603818), PURA (600473), PFDN1 (604897), HBEGF (126150), SLC4A9 (610207), ANKHD1 (610500), EIF4EBP3 (603483), SRA1 (603819), APBB3 (602711), CD14 (158120), NDUFA2 (602137), IK (600549), DND1 (609385), HARS (142810), HARS2 (600783), VTRNA1-1 (612695), VTRNA1-2 (612696), VTRNA1-3 (612697), PCDHA1 (606307), PCDHA2 (606308), PCDHA3 (606309), PCDHA4 (606310), PCDHA5 (606311), PCDHA6 (606312), PCDHA7 (606313), PCDHA8 (606314), PCDHA9 (606315), PCDHA10 (606316), PCDHA11 (606317), PCDHA12 (606318), PCDHA13 (606319), PCDHAC1 (606320), PCDHAC2 (606321), PCDHB1 (606327), PCDHB2 (606328), PCDHB3 (606329), PCDHB4 (606330), PCDHB5 (606331), PCDHB6 (606332), PCDHB7 (606333), PCDHB8 (606334), PCDHB16 (606345), PCDHB9 (606335), PCDHB10 (606336), PCDHB11 (606337), PCDHB12 (606338), PCDHB13 (606339), PCDHB14 (606340), PCDHB15 (606341), SLC25A2 (608157), TAF7 (600573), PCDHGA1 (606288), PCDHGA2 (606289), PCDHGA3 (606290), PCDHGB1 (606299), PCDHGA4 (606291), PCDHGB2 (606300), PCDHGA5 (606292), PCDHGB3 (606301), PCDHGA6 (606293), PCDHGA7 (606294), PCDHGB4 (603058), PCDHGA8 (606295), PCDHGB5 (606302), PCDHGA9 (606296), PCDHGB6 (606303), PCDHGA10 (606297), PCDHGB7 (606304), PCDHGA11 (606298), PCDHGA12 (603059), PCDHGC3 (603627), PCDHGC4 (606305), PCDHGC5 (606306), DIAPH1 (602121), HDAC3 (605166), RELL2 (611213), FCHSD1 (617555), ARAP3 (606647), PCDH1 (603626), DELE1 (615741), PCDH12 (605622), RNF14 (605675), GNPDA1 (601798), NDFIP1 (612050), SPRY4 (607984), SPRY4-IT1 (617617), FGF1 (131220), ARHGAP26 (605370), NR3C1 (138040), HMHB1 (609961), YIPF5 (611483), KCTD16 (613423), GRXCR2 (615762), SH3RF2 (613377), LARS (151350), POU4F3 (602460), TCERG1 (605409), PPP2R2B (604325), DPYSL3 (601168), JAKMIP2 (611197), SPINK1 (167790), SCGB3A2 (606531), SPINK5 (605010), SPINK6 (615868), SPINK13 (615205), SPINK7 (617288), SPINK9 (613511), FBXO38 (608533), HTR4 (602164), ADRB2 (109690), SH3TC2 (608206), ABLIM3 (611305), AFAP1L1 (614410), IL17B (604627), MIR143 (612117), MIR145 (611795), CSNK1A1 (600505), PPARGC1B (608886), MIR378A (611957), PDE6A (180071), SLC26A2 (606718), CSF1R (164770), PDGFRB (173410), CDX1 (600746), SLC6A7 (606205), CAMK2A (114078), ARSI (610009), TCOF1 (606847), CD74 (142790), RPS14 (130620), NDST1 (600853), SYNPO (608155), MYOZ3 (610735), RBM22 (612430), DCTN4 (614758), SMIM3 (608324), IRGM (608212), ZNF300 (612429), GPX3 (138321), TNIP1 (607714), ANXA6 (114070), GM2A (613109), SLC36A3 (608332), SLC36A2 (608331), SLC36A1 (606561), FAT2 (604269), SPARC (182120), ATOX1 (602270), G3BP1 (608431), GLRA1 (138491), NMUR2 (605108)	CytoRegions Not Set				false	arr[hg19] 5q23.1q33.1(117,330,215-151,927,597)x1-2	chr5:117330215-151927597
LST.OSCHP	1.67	Loss	11	p14.1	11480.502	810	63	LINC02546, LINC01616, KCNA4, FSHB, ARL14EP, MPPED2, DCDC1, DNAJC24, IMMP1L, ELP4, PAX6, PAX6-AS1, PAUPAR, LOC100506675, RCN1, SNORA88, WT1, WT1-AS, EIF3M, CCDC73, PRRG4, QSER1, DEPDC7, TCP11L1, LINC00294, CSTF3, CSTF3-DT, HIPK3, KIAA1549L, C11orf91, CD59, FBXO3, FBXO3-DT, LMO2, CAPRIN1, NAT10, ABTB2, CAT, ELF5, EHF, APIP, PDHX, MIR1343, LOC100507144, CD44, SNORD164, SLC1A2, PAMR1, FJX1, TRIM44, LDLRAD3, MIR3973, LOC101928510, COMMD9, PRR5L, TRAF6, RAG1, RAG2, C11orf74, LOC105376633, LOC103312105, LINC01493, LRRC4C	41	KCNA4 (176266), FSHB (136530), ARL14EP (612295), MPPED2 (600911), DCDC1 (608062), DNAJC24 (611072), IMMP1L (612323), ELP4 (606985), PAX6 (607108), RCN1 (602735), WT1 (607102), WT1-AS (607899), EIF3M (609641), CCDC73 (612328), PRRG4 (611690), DEPDC7 (612294), LINC00294 (612296), CSTF3 (600367), HIPK3 (604424), KIAA1549L (612297), CD59 (107271), FBXO3 (609089), LMO2 (180385), CAPRIN1 (601178), NAT10 (609221), CAT (115500), ELF5 (605169), EHF (605439), APIP (612491), PDHX (608769), CD44 (107269), SLC1A2 (600300), FJX1 (612206), TRIM44 (612298), LDLRAD3 (617986), COMMD9 (612299), PRR5L (611728), TRAF6 (602355), RAG1 (179615), RAG2 (179616), LRRC4C (608817)	CytoRegions Not Set				false	arr[hg19] 11p14.1p12(29,504,740-40,985,242)x1-2	chr11:29504740-40985242
LST.OSCHP	1.67	Loss	18	p11.32	5171.608	392	41	LINC02564, LOC102723376, TUBB8P12, ROCK1P1, MIR8078, USP14, THOC1, COLEC12, LINC01925, CETN1, CLUL1, TYMSOS, TYMS, ENOSF1, YES1, ADCYAP1, LINC01904, LINC00470, METTL4, NDC80, CBX3P2, SMCHD1, EMILIN2, LPIN2, LOC727896, MYOM1, MYL12A, LOC104968399, MYL12B, LINC01895, TGIF1, GAPLINC, DLGAP1, DLGAP1-AS1, DLGAP1-AS2, DLGAP1-AS3, MIR6718, DLGAP1-AS4, DLGAP1-AS5, LINC01892, AKAIN1	18	USP14 (607274), THOC1 (606930), COLEC12 (607621), CETN1 (603187), CLUL1 (616990), TYMS (188350), ENOSF1 (607427), YES1 (164880), ADCYAP1 (102980), NDC80 (607272), SMCHD1 (614982), EMILIN2 (608928), LPIN2 (605519), MYOM1 (603508), MYL12B (609211), TGIF1 (602630), DLGAP1 (605445), AKAIN1 (616427)	CytoRegions Not Set				false	arr[hg19] 18p11.32p11.31(12,841-5,184,449)x1-2	chr18:12841-5184449
LST.OSCHP	1.67	Loss	4	q21.23	63999.727	4755	321	LOC101928978, NKX6-1, CDS1, WDFY3, WDFY3-AS2, ARHGAP24, MIR4451, MAPK10, LOC101929064, MIR4452, PTPN13, SLC10A6, C4orf36, AFF1-AS1, AFF1, KLHL8, MIR5705, HSD17B13, HSD17B11, NUDT9, SPARCL1, DSPP, DMP1, IBSP, MEPE, SPP1, PKD2, ABCG2, PPM1K, LOC105369192, HERC6, HERC5, PYURF, PIGY, LOC101929134, HERC3, NAP1L5, FAM13A-AS1, FAM13A, TIGD2, GPRIN3, SNCA, SNCA-AS1, MMRN1, CCSER1, LNCPRESS2, GRID2, ATOH1, LOC101929210, SMARCAD1, HPGDS, PDLIM5, BMPR1B-DT, BMPR1B, UNC5C, PDHA2, LINC02267, STPG2-AS1, STPG2, RAP1GDS1, TSPAN5, LOC105377342, EIF4E, METAP1, MIR3684, ADH5, LOC100507053, ADH4, PCNAP1, ADH6, ADH1A, ADH1B, ADH1C, ADH7, C4orf17, TRMT10A, MTTP, C4orf54, DAPP1, LAMTOR3, DNAJB14, H2AFZ, LOC256880, DDIT4L, LOC101929353, SNORA101A, EMCN, LINC01216, PPP3CA, MIR8066, MIR1255A, FLJ20021, BANK1, SLC39A8, LOC105377621, NFKB1, MANBA, LOC102723704, UBE2D3, LOC105377348, CISD2, SLC9B1, SLC9B2, BDH2, CENPE, LINC02428, TACR3, CXXC4, CXXC4-AS1, TET2, TET2-AS1, PPA2, ARHGEF38, ARHGEF38-IT1, INTS12, GSTCD, LOC101929529, NPNT, LOC101929577, TBCK, AIMP1, GIMD1, LINC02173, DKK2, PAPSS1, SGMS2, LOC101929595, CYP2U1, HADH, LEF1, LEF1-AS1, RPL34-AS1, LOC101929621, RPL34, OSTC, ETNPPL, COL25A1, ZCCHC23, SEC24B-AS1, SEC24B, MCUB, CASP6, PLA2G12A, CFI, GAR1, RRH, LRIT3, EGF, ELOVL6, ENPEP, PANCR, PITX2, FAM241A, AP1AR, TIFA, ALPK1, NEUROG2, LOC105377372, ZGRF1, LARP7, LOC109864269, MIR367, MIR302D, MIR302A, MIR302C, MIR302B, ANK2, MIR1243, MIR8082, CAMK2D, ARSJ, UGT8, MIR577, NDST4, MIR1973, TRAM1L1, LINC02262, LINC02263, LINC01378, LINC02264, NDST3, SNHG8, SNORA24, PRSS12, CEP170P1, LOC729218, LOC101929741, METTL14, SEC24D, SYNPO2, MYOZ2, LOC101929762, USP53, C4orf3, FABP2, LINC01061, GTF2IP12, LOC645513, PDE5A, LINC01365, LINC02502, MAD2L1, PRDM5, NDNF, TNIP3, QRFPR, ANXA5, TMEM155, PP12613, EXOSC9, CCNA2, BBS7, TRPC3, KIAA1109, ADAD1, IL2, IL21, IL21-AS1, CETN4P, BBS12, FGF2, NUDT6, SPATA5, SPRY1, LINC01091, LINC02516, ANKRD50, FAT4, MIR2054, INTU, SLC25A31, HSPA4L, PLK4, MFSD8, ABHD18, LARP1B, PGRMC2, LOC100507487, JADE1, SCLT1, C4orf33, LINC02466, LINC02465, LINC02479, SNHG27, LINC01256, LOC101927359, PCDH10, PABPC4L, LINC02462, LINC02485, LINC00613, LINC02511, LINC02510, PCDH18, LINC02172, LINC00616, SLC7A11-AS1, SLC7A11, LINC00499, LOC105377448, NOCT, ELF2, MGARP, NDUFC1, NAA15, RAB33B, SETD7, MGST2, MAML3, LOC101927516, SCOC, SCOC-AS1, CLGN, MGAT4D, ELMOD2, UCP1, TBC1D9, TNRC18P1, RNF150, ZNF330, LINC02432, IL15, INPP4B, LOC105377623, USP38, GAB1, MIR3139, SMARCA5, SMARCA5-AS1, GUSBP5, FREM3, LOC105377458, GYPE, LOC101927636, GYPB, GYPA, HHIP-AS1, HHIP, ANAPC10, ABCE1, OTUD4, LINC02266, SMAD1, SMAD1-AS2, SMAD1-AS1, MMAA, C4orf51, ZNF827, LINC01095, LSM6, REELD1, SLC10A7, MIR7849, POU4F2, TTC29, EDNRA, TMEM184C, PRMT9, ARHGAP10, MIR4799	188	NKX6-1 (602563), CDS1 (603548), WDFY3 (617485), ARHGAP24 (610586), MAPK10 (602897), PTPN13 (600267), SLC10A6 (613366), AFF1 (159557), KLHL8 (611967), HSD17B13 (612127), HSD17B11 (612831), NUDT9 (606022), SPARCL1 (606041), DSPP (125485), DMP1 (600980), IBSP (147563), MEPE (605912), SPP1 (166490), PKD2 (173910), ABCG2 (603756), PPM1K (611065), HERC6 (609249), HERC5 (608242), PIGY (610662), HERC3 (605200), NAP1L5 (612203), FAM13A-AS1 (613300), FAM13A (613299), TIGD2 (612973), GPRIN3 (611241), SNCA (163890), MMRN1 (601456), GRID2 (602368), ATOH1 (601461), SMARCAD1 (612761), HPGDS (602598), PDLIM5 (605904), BMPR1B (603248), UNC5C (603610), PDHA2 (179061), RAP1GDS1 (179502), TSPAN5 (613136), EIF4E (133440), METAP1 (610151), ADH5 (103710), ADH4 (103740), ADH6 (103735), ADH1A (103700), ADH1B (103720), ADH1C (103730), ADH7 (600086), TRMT10A (616013), MTTP (157147), C4orf54 (617881), DAPP1 (605768), LAMTOR3 (603296), DNAJB14 (617487), H2AFZ (142763), DDIT4L (607730), EMCN (608350), PPP3CA (114105), BANK1 (610292), SLC39A8 (608732), NFKB1 (164011), MANBA (609489), UBE2D3 (602963), CISD2 (611507), SLC9B1 (611527), SLC9B2 (611789), CENPE (117143), TACR3 (162332), CXXC4 (611645), TET2 (612839), PPA2 (609988), INTS12 (611355), GSTCD (615912), NPNT (610306), TBCK (616899), AIMP1 (603605), DKK2 (605415), PAPSS1 (603262), SGMS2 (611574), CYP2U1 (610670), HADH (601609), LEF1 (153245), RPL34 (616862), ETNPPL (614682), COL25A1 (610004), SEC24B (607184), CASP6 (601532), PLA2G12A (611652), CFI (217030), GAR1 (606468), RRH (605224), LRIT3 (615004), EGF (131530), ELOVL6 (611546), ENPEP (138297), PANCR (617286), PITX2 (601542), AP1AR (610851), TIFA (609028), ALPK1 (607347), NEUROG2 (606624), LARP7 (612026), MIR367 (614600), MIR302D (614599), MIR302A (614596), MIR302C (614598), MIR302B (614597), ANK2 (106410), CAMK2D (607708), ARSJ (610010), UGT8 (601291), NDST4 (615039), TRAM1L1 (617505), NDST3 (603950), PRSS12 (606709), METTL14 (616504), SEC24D (607186), MYOZ2 (605602), USP53 (617431), FABP2 (134640), PDE5A (603310), MAD2L1 (601467), PRDM5 (614161), NDNF (616506), TNIP3 (608019), QRFPR (606925), ANXA5 (131230), EXOSC9 (606180), CCNA2 (123835), BBS7 (607590), TRPC3 (602345), KIAA1109 (611565), ADAD1 (614130), IL2 (147680), IL21 (605384), BBS12 (610683), FGF2 (134920), NUDT6 (606261), SPATA5 (613940), SPRY1 (602465), FAT4 (612411), INTU (610621), SLC25A31 (610796), PLK4 (605031), MFSD8 (611124), PGRMC2 (607735), JADE1 (610514), SCLT1 (611399), PCDH10 (608286), PCDH18 (608287), SLC7A11 (607933), NOCT (608468), NDUFC1 (603844), NAA15 (608000), RAB33B (605950), SETD7 (606594), MGST2 (601733), MAML3 (608991), CLGN (601858), MGAT4D (610310), ELMOD2 (610196), UCP1 (113730), ZNF330 (609550), IL15 (600554), INPP4B (607494), GAB1 (604439), SMARCA5 (603375), FREM3 (608946), GYPE (138590), GYPB (617923), GYPA (617922), HHIP (606178), ANAPC10 (613745), ABCE1 (601213), OTUD4 (611744), SMAD1 (601595), MMAA (607481), ZNF827 (617962), LSM6 (607286), SLC10A7 (611459), POU4F2 (113725), EDNRA (131243), TMEM184C (613937), PRMT9 (616125), ARHGAP10 (609746)	CytoRegions Not Set				false	arr[hg19] 4q21.23q31.23(84,871,064-148,870,791)x1-2	chr4:84871064-148870791
LST.OSCHP	1.67	Loss	10	p15.2	304.431	35	3	LOC105376360, KLF6, LOC105376365	1	KLF6 (602053)	CytoRegions Not Set				false	arr[hg19] 10p15.2p15.1(3,591,798-3,896,229)x1-2	chr10:3591798-3896229
LST.OSCHP	1.67	Loss	3	q21.3	46489.436	3360	321	LOC653712, ACAD9, KIAA1257, EFCC1, GP9, RAB43, ISY1-RAB43, ISY1, CNBP, COPG1, MIR6826, HMCES, H1FX, H1FX-AS1, RPL32P3, SNORA7B, EFCAB12, MBD4, IFT122, RHO, H1FOO, PLXND1, TMCC1, TMCC1-AS1, TRH, ALG1L2, LINC02014, FAM86HP, LINC02021, COL6A4P2, COL6A5, COL6A6, PIK3R4, ATP2C1, ASTE1, NEK11, LOC339874, NUDT16P1, NUDT16, MRPL3, SNORA58, CPNE4, MIR5704, ACPP, DNAJC13, ACAD11, NPHP3-ACAD11, ACKR4, UBA5, NPHP3, NPHP3-AS1, TMEM108, TMEM108-AS1, BFSP2, BFSP2-AS1, CDV3, TOPBP1, TF, SRPRB, RAB6B, C3orf36, SLCO2A1, LINC02000, RYK, LINC02004, AMOTL2, MIR6827, MIR4788, ANAPC13, CEP63, KY, EPHB1, PPP2R3A, MSL2, PCCB, STAG1, SLC35G2, NCK1-DT, NCK1, IL20RB, SOX14, LINC01210, CLDN18, DZIP1L, A4GNT, DBR1, ARMC8, NME9, MRAS, ESYT3, CEP70, FAIM, PIK3CB, LINC01391, FOXL2, FOXL2NB, PRR23A, PRR23B, PRR23C, BPESC1, PISRT1, MRPS22, COPB2, LOC100507291, RBP2, RBP1, NMNAT3, CLSTN2, CLSTN2-AS1, TRIM42, SLC25A36, SPSB4, PXYLP1, ZBTB38, RASA2, LOC646730, RNF7, GRK7, ATP1B3, TFDP2, GK5, XRN1, ATR, PLS1, TRPC1, PCOLCE2, LOC100507389, PAQR9, PAQR9-AS1, LOC100289361, U2SURP, CHST2, SLC9A9, SLC9A9-AS1, C3orf58, LNCSRLR, PLOD2, PLSCR4, PLSCR2, PLSCR1, PLSCR5, LINC02010, ZIC4, ZIC1, LOC440982, LINC02032, LINC02046, AGTR1, CPB1, CPA3, GYG1, HLTF, HLTF-AS1, HPS3, CP, TM4SF18, TM4SF1, TM4SF1-AS1, TM4SF4, WWTR1, WWTR1-AS1, COMMD2, ANKUB1, RNF13, PFN2, LOC646903, LOC105374313, LINC01213, LINC01214, TSC22D2, SERP1, EIF2A, SELENOT, ERICH6, ERICH6-AS1, LOC101928105, SIAH2, MINDY4B, CLRN1, CLRN1-AS1, MED12L, GPR171, P2RY14, GPR87, P2RY13, P2RY12, IGSF10, MIR5186, MIR548H2, AADACL2, AADACL2-AS1, AADACP1, AADAC, SUCNR1, LOC101928166, MBNL1-AS1, MBNL1, TMEM14EP, P2RY1, RAP2B, LINC02006, C3orf79, ARHGEF26-AS1, ARHGEF26, DHX36, GPR149, MME, LINC01487, DWORF, PLCH1, PLCH1-AS2, C3orf33, SLC33A1, GMPS, KCNAB1, KCNAB1-AS2, KCNAB1-AS1, SSR3, TIPARP-AS1, TIPARP, LINC00886, PA2G4P4, LEKR1, LINC00880, LINC02029, LINC00881, CCNL1, VEPH1, PTX3, PQLC2L, SHOX2, RSRC1, UC.134, LOC100996447, MLF1, GFM1, LXN, RARRES1, MFSD1, IQCJ, IQCJ-SCHIP1, SCHIP1, MIR3919, IQCJ-SCHIP1-AS1, IL12A-AS1, IL12A, LINC01100, C3orf80, TRIM59-IFT80, IFT80, SMC4, MIR15B, MIR16-2, TRIM59, KPNA4, SCARNA7, ARL14, PPM1L, B3GALNT1, NMD3, SPTSSB, LINC02067, OTOL1, LINC01192, MIR1263, LINC01324, SI, SLITRK3, LINC01322, BCHE, LOC105374194, ZBBX, LINC01327, SERPINI2, WDR49, PDCD10, SERPINI1, LRRC77P, GOLIM4, EGFEM1P, MIR551B, LINC02082, MECOM, LOC105374205, TERC, ACTRT3, MYNN, LRRC34, LRRIQ4, LRRC31, SAMD7, LOC100128164, SEC62, GPR160, PHC3, PRKCI, SKIL, CLDN11, MIR6828, SLC7A14, LOC101928583, RPL22L1, EIF5A2, SLC2A2, TNIK, MIR569, PLD1, TMEM212, TMEM212-AS1, FNDC3B, GHSR, TNFSF10, LINC02068, NCEH1, ECT2, SPATA16, NLGN1, NLGN1-AS1, NAALADL2, NAALADL2-AS3, NAALADL2-AS2	178	ACAD9 (611103), GP9 (173515), ISY1 (612764), CNBP (116955), COPG1 (615525), H1FX (602785), MBD4 (603574), IFT122 (606045), RHO (180380), PLXND1 (604282), TMCC1 (616242), TRH (613879), COL6A4P2 (616612), COL6A5 (611916), COL6A6 (616613), PIK3R4 (602610), ATP2C1 (604384), NEK11 (609779), NUDT16 (617381), MRPL3 (607118), CPNE4 (604208), ACPP (171790), DNAJC13 (614334), ACAD11 (614288), ACKR4 (606065), UBA5 (610552), NPHP3 (608002), TMEM108 (617361), BFSP2 (603212), TOPBP1 (607760), TF (190000), SRPRB (616883), RAB6B (615852), SLCO2A1 (601460), RYK (600524), AMOTL2 (614658), ANAPC13 (614484), CEP63 (614724), KY (605739), EPHB1 (600600), PPP2R3A (604944), MSL2 (614802), PCCB (232050), STAG1 (604358), SLC35G2 (617812), NCK1 (600508), IL20RB (605621), SOX14 (604747), CLDN18 (609210), DZIP1L (617570), A4GNT (616709), DBR1 (607024), MRAS (608435), ESYT3 (616692), CEP70 (614310), FAIM (617535), PIK3CB (602925), FOXL2 (605597), MRPS22 (605810), COPB2 (606990), RBP2 (180280), RBP1 (180260), NMNAT3 (608702), CLSTN2 (611323), SLC25A36 (616149), SPSB4 (611660), ZBTB38 (612218), RASA2 (601589), RNF7 (603863), GRK7 (606987), ATP1B3 (601867), TFDP2 (602160), XRN1 (607994), ATR (601215), PLS1 (602734), TRPC1 (602343), PCOLCE2 (607064), PAQR9 (614580), U2SURP (617849), CHST2 (603798), SLC9A9 (608396), C3orf58 (612200), PLOD2 (601865), PLSCR4 (607612), PLSCR2 (607610), PLSCR1 (604170), ZIC4 (608948), ZIC1 (600470), AGTR1 (106165), CPB1 (114852), CPA3 (114851), GYG1 (603942), HLTF (603257), HPS3 (606118), CP (117700), TM4SF1 (191155), TM4SF4 (606567), WWTR1 (607392), COMMD2 (616699), RNF13 (609247), PFN2 (176590), TSC22D2 (617724), SERP1 (617674), EIF2A (609234), SELENOT (607912), SIAH2 (602213), CLRN1 (606397), MED12L (611318), P2RY14 (610116), GPR87 (606379), P2RY13 (606380), P2RY12 (600515), IGSF10 (617351), AADAC (600338), SUCNR1 (606381), MBNL1 (606516), P2RY1 (601167), RAP2B (179541), ARHGEF26 (617552), DHX36 (612767), MME (120520),  (616891), PLCH1 (612835), SLC33A1 (603690), GMPS (600358), KCNAB1 (601141), SSR3 (606213), TIPARP (612480), LEKR1 (613536), CCNL1 (613384), VEPH1 (609594), PTX3 (602492), SHOX2 (602504), RSRC1 (613352), MLF1 (601402), GFM1 (606639), LXN (609305), RARRES1 (605090), IQCJ (611622), IL12A (161560), IFT80 (611177), SMC4 (605575), TRIM59 (616148), KPNA4 (602970), SCARNA7 (615644), ARL14 (614439), PPM1L (611931), B3GALNT1 (603094), NMD3 (611021), SPTSSB (610412), SI (609845), SLITRK3 (609679), BCHE (177400), SERPINI2 (605587), PDCD10 (609118), SERPINI1 (602445), GOLIM4 (606805), MECOM (165215), TERC (602322), ACTRT3 (608534), MYNN (606042), SEC62 (602173), PRKCI (600539), SKIL (165340), CLDN11 (601326), SLC7A14 (615720), EIF5A2 (605782), SLC2A2 (138160), TNIK (610005), PLD1 (602382), FNDC3B (611909), GHSR (601898), TNFSF10 (603598), NCEH1 (613234), ECT2 (600586), SPATA16 (609856), NLGN1 (600568), NAALADL2 (608806)	CytoRegions Not Set				false	arr[hg19] 3q21.3q26.31(128,566,323-175,055,759)x1-2	chr3:128566323-175055759
LST.OSCHP	1.67	Loss	5	q21.3	7985.234	581	50	MAN2A1, LINC01848, TMEM232, MIR548F3, SLC25A46, TSLP, WDR36, CAMK4, STARD4, STARD4-AS1, NREP, NREP-AS1, EPB41L4A, EPB41L4A-AS1, SNORA13, LOC101927023, EPB41L4A-DT, LINC02200, LOC102467216, APC, SRP19, REEP5, DCP2, MCC, TSSK1B, YTHDC2, KCNN2, LOC101927078, LINC01957, TRIM36, PGGT1B, CCDC112, FEM1C, TICAM2, TMED7-TICAM2, LOC101927100, TMED7, LOC102467217, CDO1, ATG12, AP3S1, LVRN, ARL14EPL, COMMD10, LOC101927190, SEMA6A, SEMA6A-AS1, SEMA6A-AS2, LINC02214, LINC00992	26	MAN2A1 (154582), SLC25A46 (610826), TSLP (607003), WDR36 (609669), CAMK4 (114080), STARD4 (607049), NREP (607332), EPB41L4A (612141), APC (611731), SRP19 (182175), REEP5 (125265), DCP2 (609844), MCC (159350), TSSK1B (610709), YTHDC2 (616530), KCNN2 (605879), TRIM36 (609317), PGGT1B (602031), FEM1C (608767), TICAM2 (608321), CDO1 (603943), ATG12 (609608), AP3S1 (601507), LVRN (610046), COMMD10 (616704), SEMA6A (605885)	CytoRegions Not Set				false	arr[hg19] 5q21.3q23.1(109,040,751-117,025,985)x1-2	chr5:109040751-117025985
LST.OSCHP	1.67	Loss	5	q33.2	1253.682	81	9	MIR3141, MIR1303, LARP1, FAXDC2, MIR378H, CNOT8, GEMIN5, MRPL22, KIF4B	5	LARP1 (612059), CNOT8 (603731), GEMIN5 (607005), MRPL22 (611835), KIF4B (609184)	CytoRegions Not Set				false	arr[hg19] 5q33.2(153,960,484-155,214,166)x1-2	chr5:153960484-155214166
LST.OSCHP	1.67	Loss	5	q14.3	286.206	20	6	MIR4280, LOC101929380, LINC01949, RASA1, CCNH, LOC644285	2	RASA1 (139150), CCNH (601953)	CytoRegions Not Set				false	arr[hg19] 5q14.3(86,330,637-86,616,843)x1-2	chr5:86330637-86616843
LST.OSCHP	1.67	Loss	6	p22.3	2487.173	204	9	MIR548A1HG, MIR548A1, LOC101928519, LOC105374960, LOC100506885, ID4, MBOAT1, E2F3, CDKAL1	4	ID4 (600581), MBOAT1 (611732), E2F3 (600427), CDKAL1 (611259)	CytoRegions Not Set				false	arr[hg19] 6p22.3(18,558,755-21,045,928)x1-2	chr6:18558755-21045928
LST.OSCHP	1.67	Loss	17	p12	6217.928	424	101	MYOCD, LOC100128006, ARHGAP44, MIR1269B, ELAC2, LINC02093, HS3ST3A1, CDRT15P1, COX10-AS1, COX10, CDRT15, HS3ST3B1, MGC12916, LOC101928475, CDRT7, CDRT8, PMP22, MIR4731, TEKT3, CDRT4, TVP23C-CDRT4, CDRT3, TVP23C, CDRT1, TRIM16, ZNF286A, TBC1D26, CDRT15P2, MEIS3P1, LINC02087, ADORA2B, ZSWIM7, TTC19, NCOR1, SNORD163, PIGL, MIR1288, CENPV, UBB, TRPV2, LRRC75A-AS1, SNORD49B, SNORD49A, SNORD65, LRRC75A, ZNF287, ZNF624, CCDC144A, USP32P1, FAM106CP, KRT16P2, KRT17P1, TBC1D27P, TNFRSF13B, LOC284191, LINC02090, MPRIP, PLD6, FLCN, COPS3, NT5M, MED9, RASD1, PEMT, SMCR2, RAI1, RAI1-AS1, SMCR5, SREBF1, MIR6777, MIR33B, TOM1L2, DRC3, ATPAF2, GID4, DRG2, MYO15A, ALKBH5, LLGL1, FLII, MIEF2, TOP3A, SMCR8, SHMT1, MIR6778, EVPLL, LINC02076, KRT17P5, KRT17P2, KRT16P1, LGALS9C, USP32P2, FAM106A, CCDC144B, TBC1D28, ZNF286B, FOXO3B, TRIM16L, FBXW10, TVP23B, PRPSAP2	44	MYOCD (606127), ARHGAP44 (617716), ELAC2 (605367), HS3ST3A1 (604057), COX10 (602125), HS3ST3B1 (604058), PMP22 (601097), TEKT3 (612683), CDRT1 (604596), TRIM16 (609505), ADORA2B (600446), ZSWIM7 (614535), TTC19 (613814), NCOR1 (600849), PIGL (605947), CENPV (608139), UBB (191339), TRPV2 (606676), TNFRSF13B (604907), MPRIP (612935), PLD6 (614960), FLCN (607273), COPS3 (604665), NT5M (605292), MED9 (609878), RASD1 (605550), PEMT (602391), RAI1 (607642), SREBF1 (184756), MIR33B (613486), TOM1L2 (615519), ATPAF2 (608918), GID4 (617699), DRG2 (602986), MYO15A (602666), ALKBH5 (613303), LLGL1 (600966), FLII (600362), MIEF2 (615498), TOP3A (601243), SMCR8 (617074), SHMT1 (182144), FBXW10 (611679), PRPSAP2 (603762)	CytoRegions Not Set				false	arr[hg19] 17p12p11.2(12,612,359-18,830,287)x1-2	chr17:12612359-18830287
LST.OSCHP	1.67	Loss	5	q14.3	1245.633	83	3	NBPF22P, COX7C, SNORD138	1	COX7C (603774)	CytoRegions Not Set				false	arr[hg19] 5q14.3(84,740,544-85,986,177)x1-2	chr5:84740544-85986177
LST.OSCHP	1.67	Loss	5	q12.1	14921.226	931	114	NDUFAF2, SMIM15, SMIM15-AS1, LINC02057, ZSWIM6, C5orf64, LOC101928651, C5orf64-AS1, KIF2A, DIMT1, IPO11, LRRC70, IPO11-LRRC70, HTR1A, RNF180, RGS7BP, SHISAL2B, SREK1IP1, CWC27, ADAMTS6, CENPK, PPWD1, TRIM23, TRAPPC13, SGTB, NLN, ERBIN, LOC100303749, SREK1, LINC02065, LINC02229, MAST4, MAST4-AS1, CD180, LINC02242, LOC101928858, LINC02219, PIK3R1, LINC02198, SLC30A5, SNORA50D, CCNB1, CENPH, MRPS36, CDK7, CCDC125, AK6, TAF9, RAD17, MARVELD2, LOC101928924, OCLN, SNORD13B-2, SNORD13B-1, GTF2H2C_2, GTF2H2C, GUSBP3, LOC653080, SERF1A, SERF1B, SMN1, SMN2, SMA4, GTF2H2B, SMA5, LOC441081, GUSBP9, NAIP, GTF2H2, OCLNP1, LINC02197, PMCHL2, BDP1, MCCC2, CARTPT, MAP1B, MIR4803, MRPS27, PTCD2, ZNF366, LOC102503427, LINC02056, TNPO1, MIR4804, FCHO2, TMEM171, LOC105379030, TMEM174, LOC340090, LINC02230, FOXD1, LINC01386, BTF3, ANKRA2, UTP15, ARHGEF28, LINC01335, LINC01333, LINC01331, ENC1, HEXB, GFM2, NSA2, FAM169A, LOC441086, GCNT4, LINC01336, ANKRD31, HMGCR, COL4A3BP, POLK, ANKDD1B, POC5, LOC441087	59	NDUFAF2 (609653), ZSWIM6 (615951), KIF2A (602591), DIMT1 (612499), IPO11 (610889), HTR1A (109760), RNF180 (616015), RGS7BP (610890), CWC27 (617170), ADAMTS6 (605008), CENPK (611502), TRIM23 (601747), NLN (611530), ERBIN (606944), SREK1 (609268), MAST4 (618002), CD180 (602226), PIK3R1 (171833), SLC30A5 (607819), CCNB1 (123836), CENPH (605607), MRPS36 (611996), CDK7 (601955), CCDC125 (613781), TAF9 (600822), RAD17 (603139), MARVELD2 (610572), OCLN (602876), SERF1A (603011), SMN1 (600354), SMN2 (601627), NAIP (600355), GTF2H2 (601748), PMCHL2 (176794), BDP1 (607012), MCCC2 (609014), CARTPT (602606), MAP1B (157129), MRPS27 (611989), PTCD2 (615484), ZNF366 (610159), TNPO1 (602901), FCHO2 (613438), TMEM174 (614909), FOXD1 (601091), BTF3 (602542), ANKRA2 (605787), UTP15 (616194), ARHGEF28 (612790), ENC1 (605173), HEXB (606873), GFM2 (606544), NSA2 (612497), FAM169A (615769), GCNT4 (616782), HMGCR (142910), COL4A3BP (604677), POLK (605650), POC5 (617880)	CytoRegions Not Set				false	arr[hg19] 5q12.1q13.3(60,241,945-75,163,171)x1-2	chr5:60241945-75163171
LST.OSCHP	1.67	Loss	5	q15	15128.999	1004	54	NR2F1-AS1, NR2F1, FAM172A, MIR2277, POU5F2, KIAA0825, SLF1, MCTP1, FAM81B, TTC37, ARSK, GPR150, RFESD, SPATA9, RHOBTB3, GLRX, LINC01554, ELL2, LOC101929710, MIR583, PCSK1, CAST, ERAP1, ERAP2, LNPEP, LIX1, RIOK2, LINC01340, LINC02234, LINC01846, RGMB, RGMB-AS1, CHD1, LINC02062, LOC100289230, LINC02113, LOC100133050, FAM174A, ST8SIA4, MIR548P, SLCO4C1, SLCO6A1, LINC00492, LINC00491, PAM, GIN1, PPIP5K2, C5orf30, LINC02115, NUDT12, RAB9BP1, LINC01950, EFNA5, FBXL17	27	NR2F1 (132890), KIAA0825 (617266), MCTP1 (616296), TTC37 (614589), ARSK (610011), SPATA9 (608039), RHOBTB3 (607353), GLRX (600443), ELL2 (601874), PCSK1 (162150), CAST (114090), ERAP1 (606832), ERAP2 (609497), LNPEP (151300), LIX1 (610466), RIOK2 (617754), RGMB (612687), CHD1 (602118), ST8SIA4 (602547), SLCO4C1 (609013), SLCO6A1 (613365), PAM (170270), PPIP5K2 (611648), C5orf30 (616608), NUDT12 (609232), EFNA5 (601535), FBXL17 (609083)	CytoRegions Not Set				false	arr[hg19] 5q15q21.3(92,675,984-107,804,983)x1-2	chr5:92675984-107804983
LST.OSCHP	1.67	Loss	X	p11.22	7355.868	497	79	NUDT10, CXorf67, NUDT11, LINC01496, CENPVL3, CENPVL1, CENPVL2, GSPT2, MAGED1, MAGED4, MAGED4B, SNORA11E, SNORA11D, MIR8088, XAGE2, XAGE1A, XAGE1B, SSX8P, SSX7, SSX2B, SSX2, SPANXN5, XAGE5, XAGE3, FAM156B, FAM156A, GPR173, TSPYL2, KANTR, KDM5C, MIR6895, MIR6894, IQSEC2, SMC1A, MIR6857, RIBC1, HSD17B10, HUWE1, MIR98, MIRLET7F2, PHF8, FAM120C, WNK3, TSR2, FGD1, GNL3L, ITIH6, MAGED2, SNORA11, TRO, SNORA11G, PFKFB1, APEX2, ALAS2, PAGE2B, PAGE2, FAM104B, MTRNR2L10, SNORA109, PAGE5, PAGE3, LOC100421746, MIR4536-2, MIR4536-1, MAGEH1, USP51, FOXR2, RRAGB, KLF8, UBQLN2, NBDY, UQCRBP1, SPIN3, SPIN2B, SPIN2A, FAAH2, ZXDB, NLRP2B, ZXDA	52	NUDT10 (300527), NUDT11 (300528), GSPT2 (300418), MAGED1 (300224), MAGED4B (300765), MAGED4 (300702), XAGE2 (300416), XAGE1B (300744), XAGE1B (300745), XAGE1A (300742), XAGE1A (300743), XAGE1B (300289), SSX8P (300543), SSX7 (300542), SSX2 (300192), SPANXN5 (300668), XAGE3 (300740), GPR173 (300253), TSPYL2 (300564), KDM5C (314690), IQSEC2 (300522), SMC1A (300040), HSD17B10 (300256), HUWE1 (300697), MIR98 (300810), MIRLET7F2 (300721), PHF8 (300560), FAM120C (300741), WNK3 (300358), TSR2 (300945), FGD1 (300546), GNL3L (300873), MAGED2 (300470), SNORA11 (300662), TRO (300132), PFKFB1 (311790), APEX2 (300773), ALAS2 (301300), PAGE2 (300738), PAGE5 (301009), PAGE3 (300739), MAGEH1 (300548), FOXR2 (300949), RRAGB (300725), KLF8 (300286), UBQLN2 (300264), NBDY (300992), SPIN2B (300517), SPIN2A (300621), FAAH2 (300654), ZXDB (300236), ZXDA (300235)	CytoRegions Not Set				false	arr[hg19] Xp11.22p11.1(51,016,451-58,372,319)x1-2	chrX:51016451-58372319
LST.OSCHP	1.67	Loss	13	q21.2	53113.611	4460	283	PCDH20, LINC02339, LINC00358, LINC01075, LINC01074, LINC00459, LINC00448, LINC00376, LINC00395, OR7E156P, LOC102723968, LINC00355, LINC01052, MIR548X2, MIR4704, PCDH9, PCDH9-AS2, PCDH9-AS3, PCDH9-AS4, LINC00364, LINC00550, LINC00383, KLHL1, ATXN8OS, LINC00348, DACH1, MZT1, BORA, DIS3, PIBF1, KLF5, LINC00392, KLF12, LINC00402, LOC100288208, LINC00381, LINC00347, CTAGE11P, LINC01078, TBC1D4, COMMD6, UCHL3, LMO7-AS1, LMO7, LMO7DN, LMO7DN-IT1, LINC00561, KCTD12, BTF3P11, ACOD1, CLN5, FBXL3, MYCBP2, MYCBP2-AS1, SCEL, SCEL-AS1, LOC100129307, SLAIN1, MIR3665, EDNRB-AS1, EDNRB, LINC01069, LINC00446, RNF219-AS1, POU4F1, RNF219, LINC00331, RBM26, RBM26-AS1, NDFIP2-AS1, NDFIP2, LINC01068, LINC01038, LINC00382, LINC01080, SPRY2, LINC00377, LINC00564, SLITRK1, LINC00333, SNORA107, LINC00375, LINC00351, SLITRK6, LINC00430, MIR4500HG, MIR4500, SLITRK5, LINC00397, LOC105370306, LINC00433, LINC00560, LINC01047, LINC00440, LINC01040, LINC00353, LINC00559, MIR622, LINC01049, LINC00410, LINC00380, LINC00379, MIR17HG, MIR17, MIR18A, MIR19A, MIR20A, MIR19B1, MIR92A1, GPC5, GPC5-AS2, MIR548AS, GPC5-AS1, LINC00363, GPC6, GPC6-AS2, GPC6-AS1, DCT, TGDS, GPR180, LOC101927248, SOX21, SOX21-AS1, LOC101927284, LINC00557, ABCC4, SNORD13G, CLDN10, CLDN10-AS1, DZIP1, DNAJC3-DT, DNAJC3, UGGT2, HS6ST3, MIR4501, LINC00359, OXGR1, LINC00456, MBNL2, RAP2A, IPO5, FARP1, RNF113B, MIR3170, STK24, STK24-AS1, SLC15A1, DOCK9, DOCK9-AS1, DOCK9-DT, UBAC2-AS1, UBAC2, GPR18, GPR183, FKSG29, MIR623, LINC01232, LINC00449, TM9SF2, LINC01039, CLYBL, MIR4306, CLYBL-AS2, CLYBL-AS1, LOC101927437, ZIC5, ZIC2, LINC00554, LOC105370333, PCCA, PCCA-AS1, GGACT, TMTC4, NALCN-AS1, LINC00411, NALCN, ITGBL1, FGF14, MIR2681, MIR4705, FGF14-IT1, FGF14-AS1, FGF14-AS2, TPP2, METTL21C, CCDC168, TEX30, KDELC1, BIVM, BIVM-ERCC5, ERCC5, METTL21EP, SLC10A2, LINC01309, DAOA-AS1, DAOA, LINC00343, LINC00460, EFNB2, ARGLU1, LINC00551, LINC00443, FAM155A, SNORD31B, MIR1267, FAM155A-IT1, LIG4, ABHD13, TNFSF13B, MYO16, MYO16-AS1, LINC00399, LINC00676, IRS2, LINC00396, LOC105370361, COL4A1, COL4A2, MIR8073, COL4A2-AS2, COL4A2-AS1, RAB20, NAXD, CARS2, ING1, LINC00567, LINC00346, ANKRD10, LINC00431, LINC00368, ARHGEF7-AS2, ARHGEF7, ARHGEF7-AS1, LOC101060553, TEX29, LINC02337, LINC00354, SOX1-OT, SOX1, LOC100506016, LINC01070, LOC101928730, LINC01043, LINC01044, SPACA7, TUBGCP3, ATP11AUN, ATP11A, ATP11A-AS1, MCF2L-AS1, MCF2L, F7, F10, F10-AS1, PROZ, PCID2, CUL4A, MIR8075, LAMP1, GRTP1, GRTP1-AS1, LOC101928841, ADPRHL1, DCUN1D2, TMCO3, TFDP1, ATP4B, GRK1, LINC00552, TMEM255B, GAS6-AS1, GAS6, GAS6-DT, LINC00454, LINC00452, LINC00565, RASA3, CDC16, MIR548AR, MIR4502, UPF3A, CHAMP1, LINC01054	109	PCDH20 (614449), PCDH9 (603581), KLHL1 (605332), ATXN8OS (603680), DACH1 (603803), MZT1 (613448), BORA (610510), DIS3 (607533), PIBF1 (607532), KLF5 (602903), KLF12 (607531), TBC1D4 (612465), COMMD6 (612377), UCHL3 (603090), LMO7 (604362), KCTD12 (610521), BTF3P11 (602543), ACOD1 (615275), CLN5 (608102), FBXL3 (605653), MYCBP2 (610392), SCEL (604112), SLAIN1 (610491), EDNRB (131244), POU4F1 (601632), RNF219 (615906), NDFIP2 (610041), LINC01080 (615230), SPRY2 (602466), SLITRK1 (609678), SLITRK6 (609681), SLITRK5 (609680), MIR17HG (609415), MIR17 (609416), MIR18A (609417), MIR19A (609418), MIR20A (609420), MIR19B1 (609419), MIR92A1 (609422), GPC5 (602446), GPC6 (604404), DCT (191275), TGDS (616146), GPR180 (607787), SOX21 (604974), ABCC4 (605250), CLDN10 (617579), DZIP1 (608671), DNAJC3 (601184), UGGT2 (605898), HS6ST3 (609401), OXGR1 (606922), MBNL2 (607327), RAP2A (179540), IPO5 (602008), FARP1 (602654), STK24 (604984), SLC15A1 (600544), DOCK9 (607325), GPR18 (602042), GPR183 (605741), TM9SF2 (604678), CLYBL (609686), ZIC5 (617896), ZIC2 (603073), PCCA (232000), GGACT (613378), NALCN (611549), ITGBL1 (604234), FGF14 (601515), TPP2 (190470), METTL21C (615259), KDELC1 (611613), ERCC5 (133530), SLC10A2 (601295), DAOA-AS1 (607415), DAOA (607408), EFNB2 (600527), ARGLU1 (614046), LIG4 (601837), TNFSF13B (603969), MYO16 (615479), IRS2 (600797), COL4A1 (120130), COL4A2 (120090), NAXD (615910), CARS2 (612800), ING1 (601566), ARHGEF7 (605477), SOX1 (602148), TUBGCP3 (617818), ATP11A (605868), MCF2L (609499), F7 (613878), F10 (613872), PROZ (176895), PCID2 (613713), CUL4A (603137), LAMP1 (153330), ADPRHL1 (610620), TMCO3 (617134), TFDP1 (189902), ATP4B (137217), GRK1 (180381), GAS6 (600441), RASA3 (605182), CDC16 (603461), UPF3A (605530), CHAMP1 (616327)	CytoRegions Not Set				false	arr[hg19] 13q21.2q34(61,989,539-115,103,150)x1-2	chr13:61989539-115103150
LST.OSCHP	1.67	Loss	17	p13.2	6458.78	579	160	RABEP1, NUP88, RPAIN, C1QBP, DHX33, LOC105371506, DERL2, MIS12, LOC728392, NLRP1, LOC339166, WSCD1, AIPL1, PIMREG, PITPNM3, KIAA0753, TXNDC17, MED31, C17orf100, MIR4520-1, MIR4520-2, ALOX15P1, SLC13A5, XAF1, FBXO39, TEKT1, ALOX12P2, ALOX12-AS1, ALOX12, RNASEK, RNASEK-C17orf49, C17orf49, MIR497HG, MIR195, MIR497, BCL6B, SLC16A13, SLC16A11, CLEC10A, ASGR2, ASGR1, DLG4, ACADVL, MIR324, DVL2, PHF23, GABARAP, CTDNEP1, ELP5, CLDN7, SLC2A4, YBX2, EIF5A, GPS2, NEURL4, ACAP1, KCTD11, TMEM95, TNK1, PLSCR3, TMEM256-PLSCR3, TMEM256, NLGN2, SPEM1, SPEM2, TMEM102, FGF11, CHRNB1, ZBTB4, SLC35G6, POLR2A, TNFSF12, TNFSF12-TNFSF13, TNFSF13, SENP3, SENP3-EIF4A1, EIF4A1, SNORA48, SNORD10, SNORA67, CD68, LOC100996842, MPDU1, SOX15, FXR2, SHBG, SAT2, ATP1B2, TP53, WRAP53, EFNB3, DNAH2, RPL29P2, KDM6B, TMEM88, NAA38, CYB5D1, CHD3, SCARNA21, RNF227, KCNAB3, TRAPPC1, CNTROB, GUCY2D, ALOX15B, ALOX12B, MIR4314, ALOXE3, HES7, PER1, MIR6883, VAMP2, TMEM107, MIR4521, BORCS6, AURKB, LINC00324, CTC1, PFAS, SLC25A35, RANGRF, ARHGEF15, ODF4, LOC100128288, KRBA2, RPL26, RNF222, NDEL1, MYH10, CCDC42, SPDYE4, MFSD6L, PIK3R6, PIK3R5, NTN1, LOC101928266, STX8, CFAP52, USP43, DHRS7C, GSG1L2, GLP2R, RCVRN, GAS7, MYH13, MYHAS, MYH8, MYH4, MYH1, MYH2, MYH3, SCO1, ADPRM, TMEM220, MAGOH2P, TMEM220-AS1, TMEM238L, PIRT, SHISA6, DNAH9	114	RABEP1 (603616), NUP88 (602552), RPAIN (617299), C1QBP (601269), DHX33 (614405), DERL2 (610304), MIS12 (609178), NLRP1 (606636), AIPL1 (604392), PIMREG (617611), PITPNM3 (608921), KIAA0753 (617112), TXNDC17 (616967), SLC13A5 (608305), XAF1 (606717), FBXO39 (609106), TEKT1 (609002), ALOX12 (152391), RNASEK (617098), C17orf49 (617215), MIR195 (610718), MIR497 (615672), BCL6B (608992), SLC16A11 (615765), CLEC10A (605999), ASGR2 (108361), ASGR1 (108360), DLG4 (602887), ACADVL (609575), DVL2 (602151), PHF23 (612910), GABARAP (605125), CTDNEP1 (610684), ELP5 (615019), CLDN7 (609131), SLC2A4 (138190), YBX2 (611447), EIF5A (600187), GPS2 (601935), NEURL4 (615865), ACAP1 (607763), KCTD11 (609848), TMEM95 (617814), TNK1 (608076), PLSCR3 (607611), TMEM256 (617779), NLGN2 (606479), SPEM1 (615116), TMEM102 (613936), FGF11 (601514), CHRNB1 (100710), ZBTB4 (612308), POLR2A (180660), TNFSF12 (602695), TNFSF13 (604472), SENP3 (612844), EIF4A1 (602641), CD68 (153634), MPDU1 (604041), SOX15 (601297), FXR2 (605339), SHBG (182205), SAT2 (611463), ATP1B2 (182331), TP53 (191170), WRAP53 (612661), EFNB3 (602297), DNAH2 (603333), KDM6B (611577), TMEM88 (617813), NAA38 (617990), CHD3 (602120), KCNAB3 (604111), TRAPPC1 (610969), CNTROB (611425), GUCY2D (600179), ALOX15B (603697), ALOX12B (603741), ALOXE3 (607206), HES7 (608059), PER1 (602260), VAMP2 (185881), TMEM107 (616183), BORCS6 (616599), AURKB (604970), CTC1 (613129), PFAS (602133), SLC25A35 (610818), RANGRF (607954), ARHGEF15 (608504), ODF4 (610097), RPL26 (603704), NDEL1 (607538), MYH10 (160776), SPDYE4 (617628), PIK3R6 (611462), PIK3R5 (611317), NTN1 (601614), STX8 (604203), CFAP52 (609804), DHRS7C (616161), GLP2R (603659), RCVRN (179618), GAS7 (603127), MYH13 (603487), MYH8 (160741), MYH4 (160742), MYH1 (160730), MYH2 (160740), MYH3 (160720), SCO1 (603644), PIRT (612068), SHISA6 (617327), DNAH9 (603330)	CytoRegions Not Set				false	arr[hg19] 17p13.2p12(5,230,866-11,689,646)x1-2	chr17:5230866-11689646
LST.OSCHP	1.67	Loss	9	p24.2	1240.548	84	10	RFX3-AS1, GLIS3, GLIS3-AS1, SLC1A1, SPATA6L, PLPP6, CDC37L1-DT, CDC37L1, AK3, RCL1	6	GLIS3 (610192), SLC1A1 (133550), PLPP6 (611666), CDC37L1 (610346), AK3 (609290), RCL1 (611405)	CytoRegions Not Set				false	arr[hg19] 9p24.2p24.1(3,579,890-4,820,438)x1-2	chr9:3579890-4820438
LST.OSCHP	1.67	Loss	18	q11.1	2941.003	196	23	ROCK1, GREB1L, ESCO1, SNRPD1, ABHD3, MIR320C1, MIB1, MIR133A1HG, MIR133A1, MIR1-2, GATA6-AS1, GATA6, CTAGE1, LOC101927571, RBBP8, MIR4741, CABLES1, TMEM241, RIOK3, RMC1, NPC1, ANKRD29, LAMA3	16	ROCK1 (601702), GREB1L (617782), ESCO1 (609674), SNRPD1 (601063), ABHD3 (612197), MIB1 (608677), MIR133A1 (610254), MIR1-2 (610252), GATA6 (601656), CTAGE1 (608856), RBBP8 (604124), CABLES1 (609194), TMEM241 (615430), RIOK3 (603579), NPC1 (607623), LAMA3 (600805)	CytoRegions Not Set				false	arr[hg19] 18q11.1q11.2(18,554,480-21,495,483)x1-2	chr18:18554480-21495483
LST.OSCHP	1.67	Loss	8	p23.3	35805.48	3235	307	RPL23AP53, ZNF596, FAM87A, FBXO25, TDRP, ERICH1, DLGAP2, LOC401442, LOC286083, DLGAP2-AS1, LOC101927752, CLN8, MIR3674, MIR596, ARHGEF10, LOC101928058, KBTBD11-OT1, KBTBD11, MYOM2, MIR7160, LOC101927815, CSMD1, LOC100287015, MCPH1, ANGPT2, MCPH1-AS1, MIR8055, AGPAT5, MIR4659A, MIR4659B, XKR5, GS1-24F4.2, DEFB1, DEFA6, DEFA4, DEFA8P, DEFA9P, DEFA10P, DEFA1B, DEFA1, DEFT1P2, DEFT1P, DEFA3, DEFA11P, DEFA5, LINC00965, FAM66B, DEFB109B, USP17L1, USP17L4, ZNF705G, DEFB4B, DEFB103B, DEFB103A, SPAG11B, DEFB104B, DEFB104A, DEFB106A, DEFB106B, DEFB105B, DEFB105A, DEFB107B, DEFB107A, PRR23D1, PRR23D2, FAM90A7P, FAM90A10P, SPAG11A, DEFB4A, ZNF705B, FAM66E, USP17L8, USP17L3, MIR548I3, FAM85B, FAM86B3P, PRAG1, CLDN23, MFHAS1, ERI1, MIR4660, SNORD3I, PPP1R3B, LOC101929128, LOC157273, TNKS, MIR597, LINC00599, MIR124-1, MSRA, LINCR-0001, PRSS55, RP1L1, MIR4286, C8orf74, SOX7, LOC102723313, PINX1, MIR1322, LOC101929229, XKR6, MIR598, LOC101929269, MTMR9, SLC35G5, TDH, LOC100129129, FAM167A-AS1, FAM167A, BLK, LINC00208, GATA4, SNORA99, C8orf49, NEIL2, FDFT1, CTSB, DEFB136, DEFB135, DEFB134, DEFB130B, DEFB130A, ZNF705D, FAM66D, LOC392196, USP17L7, USP17L2, FAM90A2P, FAM86B1, FAM86B2, FAM85A, FAM66A, LOC649352, DEFB109A, FAM90A25P, LOC100506990, LOC729732, MIR5692A1, MIR5692A2, LONRF1, MIR3926-1, MIR3926-2, LOC340357, LINC00681, TRMT9B, DLC1, C8orf48, LOC102725080, SGCZ, MIR383, TUSC3, MSR1, FGF20, MICU3, ZDHHC2, CNOT7, VPS37A, MTMR7, SLC7A2, PDGFRL, MTUS1, MIR548V, FGL1, PCM1, ASAH1, LOC101929066, NAT1, NAT2, PSD3, LOC100128993, SH2D4A, CSGALNACT1, INTS10, LPL, SLC18A1, ATP6V1B2, LZTS1, LZTS1-AS1, SNORD3F, LOC102467222, LINC02153, LOC101929172, GFRA2, DOK2, XPO7, NPM2, FGF17, DMTN, FAM160B2, NUDT18, HR, REEP4, LGI3, SFTPC, BMP1, PHYHIP, MIR320A, POLR3D, LOC100507071, PIWIL2, SLC39A14, PPP3CC, SORBS3, PDLIM2, C8orf58, CCAR2, BIN3, BIN3-IT1, EGR3, PEBP4, LOC101929237, RHOBTB2, TNFRSF10B, LOC286059, LOC254896, TNFRSF10C, TNFRSF10D, TNFRSF10A, LOC389641, CHMP7, R3HCC1, LOXL2, LOC100507156, ENTPD4, SLC25A37, NKX3-1, NKX2-6, STC1, ADAM28, LOC101929294, ADAMDEC1, ADAM7, LOC101929315, NEFM, NEFL, MIR6841, DOCK5, MIR6876, GNRH1, KCTD9, CDCA2, EBF2, PPP2R2A, SDAD1P1, BNIP3L, PNMA2, DPYSL2, ADRA1A, STMN4, TRIM35, PTK2B, MIR6842, CHRNA2, EPHX2, CLU, MIR6843, SCARA3, MIR3622B, MIR3622A, CCDC25, ESCO2, PBK, SCARA5, MIR4287, NUGGC, ELP3, PNOC, ZNF395, FBXO16, FZD3, MIR4288, EXTL3-AS1, EXTL3, INTS9, HMBOX1, KIF13B, DUSP4, LINC00589, LINC02099, LOC101929470, LINC02209, MIR3148, SARAF, LEPROTL1, MBOAT4, DCTN6, RBPMS-AS1, RBPMS, GTF2E2, SMIM18, GSR, UBXN8, PPP2CB, TEX15, PURG, WRN, NRG1, NRG1-IT1, NRG1-IT3, FUT10, MAK16, TTI2, RNF122, DUSP26, LINC01288, UNC5D, LOC101929550	152	FBXO25 (609098), DLGAP2 (605438), CLN8 (607837), ARHGEF10 (608136), MYOM2 (603509), CSMD1 (608397), MCPH1 (607117), ANGPT2 (601922), AGPAT5 (614796), DEFB1 (602056), DEFA6 (600471), DEFA4 (601157), DEFA1 (125220), DEFA3 (604522), DEFA5 (600472), DEFB103B (606611), SPAG11B (606560), FAM90A7P (613044), FAM90A10P (613047), DEFB4A (602215), PRAG1 (617344), CLDN23 (609203), MFHAS1 (605352), ERI1 (608739), PPP1R3B (610541), TNKS (603303), MIR124-1 (609327), MSRA (601250), PRSS55 (615144), RP1L1 (608581), SOX7 (612202), PINX1 (606505), MTMR9 (606260), SLC35G5 (615199), FAM167A (610085), BLK (191305), GATA4 (600576), NEIL2 (608933), FDFT1 (184420), CTSB (116810), USP17L2 (610186), FAM86B1 (616122), FAM86B2 (616123), TRMT9B (615666), DLC1 (604258), SGCZ (608113), TUSC3 (601385), MSR1 (153622), FGF20 (605558), MICU3 (610633), CNOT7 (604913), VPS37A (609927), MTMR7 (603562), SLC7A2 (601872), PDGFRL (604584), MTUS1 (609589), FGL1 (605776), PCM1 (600299), ASAH1 (613468), NAT1 (108345), NAT2 (612182), PSD3 (614440), SH2D4A (614968), CSGALNACT1 (616615), INTS10 (611353), LPL (609708), SLC18A1 (193002), ATP6V1B2 (606939), LZTS1 (606551), GFRA2 (601956), DOK2 (604997), XPO7 (606140), NPM2 (608073), FGF17 (603725), DMTN (125305), NUDT18 (615791), HR (602302), REEP4 (609349), LGI3 (608302), SFTPC (178620), BMP1 (112264), PHYHIP (608511), MIR320A (614112), POLR3D (187280), PIWIL2 (610312), SLC39A14 (608736), PPP3CC (114107), SORBS3 (610795), PDLIM2 (609722), CCAR2 (607359), BIN3 (606396), EGR3 (602419), PEBP4 (612473), RHOBTB2 (607352), TNFRSF10B (603612), TNFRSF10C (603613), TNFRSF10D (603614), TNFRSF10A (603611), CHMP7 (611130), LOXL2 (606663), ENTPD4 (607577), SLC25A37 (610387), NKX3-1 (602041), NKX2-6 (611770), STC1 (601185), ADAM28 (606188), ADAMDEC1 (606393), ADAM7 (607310), NEFM (162250), NEFL (162280), DOCK5 (616904), GNRH1 (152760), KCTD9 (617265), EBF2 (609934), PPP2R2A (604941), BNIP3L (605368), PNMA2 (603970), DPYSL2 (602463), ADRA1A (104221), TRIM35 (617007), PTK2B (601212), CHRNA2 (118502), EPHX2 (132811), CLU (185430), SCARA3 (602728), ESCO2 (609353), PBK (611210), SCARA5 (611306), ELP3 (612722), PNOC (601459), ZNF395 (609494), FBXO16 (608519), FZD3 (606143), EXTL3 (605744), INTS9 (611352), KIF13B (607350), DUSP4 (602747), SARAF (614768), LEPROTL1 (607338), MBOAT4 (611940), DCTN6 (612963), RBPMS (601558), GTF2E2 (189964), GSR (138300), UBXN8 (602155), PPP2CB (176916), TEX15 (605795), WRN (604611), NRG1 (142445), FUT10 (616931), TTI2 (614426), UNC5D (616466)	CytoRegions Not Set				false	arr[hg19] 8p23.3p12(172,416-35,977,896)x1-2	chr8:172416-35977896
LST.OSCHP	1.67	Loss	16	q22.1	21234.475	1730	270	TANGO6, HAS3, CHTF8, UTP4, SNTB2, VPS4A, PDF, COG8, NIP7, TMED6, TERF2, CYB5B, MIR1538, NFAT5, SNORD13H, NQO1, NOB1, WWP2, MIR140, CLEC18A, PDXDC2P-NPIPB14P, MIR1972-1, MIR1972-2, PDPR, LOC400541, CLEC18C, LOC105371328, SMG1P7, EXOSC6, AARS, DDX19B, LOC100506083, DDX19A, ST3GAL2, FUK, COG4, SF3B3, SNORD111B, SNORD111, IL34, MTSS1L, VAC14, VAC14-AS1, HYDIN, CMTR2, CALB2, LINC02136, ZNF23, ZNF19, LOC105371335, CHST4, TAT-AS1, TAT, MARVELD3, PHLPP2, SNORA70D, AP1G1, SNORD71, ATXN1L, ZNF821, IST1, PKD1L3, DHODH, HP, HPR, TXNL4B, DHX38, PMFBP1, LINC01572, ZFHX3, HCCAT5, C16orf47, LINC01568, LOC101928035, PSMD7, LOC283922, NPIPB15, LOC105376772, CLEC18B, GLG1, RFWD3, MLKL, FA2H, WDR59, ZNRF1, LDHD, ZFP1, CTRB2, CTRB1, LOC100506281, BCAR1, CFDP1, TMEM170A, CHST6, CHST5, TMEM231, GABARAPL2, ADAT1, KARS, TERF2IP, DUXB, CPHXL, CNTNAP4, LINC02125, MIR4719, MON1B, SYCE1L, ADAMTS18, NUDT7, VAT1L, CLEC3A, WWOX, MAF, MAFTRR, LINC01229, LOC102724084, DYNLRB2, LINC01227, CDYL2, ARLNC1, CMC2, CENPN, ATMIN, C16orf46, GCSH, PKD1L2, BCO1, GAN, MIR4720, CMIP, MIR7854, MIR6504, LOC100129617, PLCG2, SDR42E1, HSD17B2, MPHOSPH6, CDH13, MIR8058, LOC101928446, LOC101928417, MIR3182, LOC102724163, HSBP1, MLYCD, OSGIN1, NECAB2, SLC38A8, MBTPS1, HSDL1, DNAAF1, TAF1C, ADAD2, LOC654780, KCNG4, WFDC1, ATP2C2, ATP2C2-AS1, TLDC1, COTL1, KLHL36, USP10, CRISPLD2, ZDHHC7, KIAA0513, FAM92B, LINC02139, LINC00311, MIR5093, GSE1, GINS2, C16orf74, MIR1910, EMC8, LOC101928557, COX4I1, IRF8, MIR6774, LINC01082, LINC01081, LINC02135, LINC00917, FENDRR, FOXF1, MTHFSD, FLJ30679, FOXC2-AS1, FOXC2, FOXL1, LINC02189, LINC02188, LINC02181, LOC101928708, LOC101928682, C16orf95, LOC101928659, FBXO31, MAP1LC3B, ZCCHC14, LOC101928737, JPH3, KLHDC4, LOC102724467, SLC7A5, MIR6775, CA5A, BANP, LOC400553, LINC02182, ZNF469, ZFPM1, MIR5189, LOC100128882, ZC3H18-AS1, ZC3H18, IL17C, CYBA, MVD, SNAI3-AS1, SNAI3, RNF166, CTU2, PIEZO1, MIR4722, LOC100289580, LOC339059, CDT1, APRT, GALNS, TRAPPC2L, PABPN1L, CBFA2T3, LOC101927793, LOC100129697, ACSF3, LINC00304, LINC02138, CDH15, SLC22A31, ZNF778, ANKRD11, LOC105371414, LOC100287036, LOC101927817, SPG7, RPL13, SNORD68, CPNE7, DPEP1, CHMP1A, SPATA33, CDK10, SPATA2L, VPS9D1, VPS9D1-AS1, ZNF276, FANCA, SPIRE2, TCF25, MC1R, TUBB3, DEF8, SNORA119, CENPBD1, AFG3L1P, DBNDD1, GAS8, GAS8-AS1, URAHP, PRDM7	155	HAS3 (602428), CHTF8 (613202), UTP4 (607456), SNTB2 (600027), VPS4A (609982), COG8 (606979), TERF2 (602027), CYB5B (611964), NFAT5 (604708), NQO1 (125860), NOB1 (613586), WWP2 (602308), MIR140 (611894), CLEC18A (616571), PDPR (617835), CLEC18C (616573), EXOSC6 (606490), AARS (601065), DDX19B (605812), ST3GAL2 (607188), FUK (608675), COG4 (606976), SF3B3 (605592), IL34 (612081), MTSS1L (616951), VAC14 (604632), HYDIN (610812), CMTR2 (616190), CALB2 (114051), ZNF23 (194527), ZNF19 (194525), TAT (613018), MARVELD3 (614094), PHLPP2 (611066), AP1G1 (603533), ATXN1L (614301), IST1 (616434), PKD1L3 (607895), DHODH (126064), HP (140100), HPR (140210), TXNL4B (617722), DHX38 (605584), ZFHX3 (104155), HCCAT5 (615613), PSMD7 (157970), CLEC18B (616572), GLG1 (600753), RFWD3 (614151), MLKL (615153), FA2H (611026), WDR59 (617418), ZNRF1 (612060), LDHD (607490), ZFP1 (617230), CTRB1 (118890), BCAR1 (602941), CFDP1 (608108), CHST6 (605294), CHST5 (604817), TMEM231 (614949), GABARAPL2 (607452), ADAT1 (604230), KARS (601421), TERF2IP (605061), CNTNAP4 (610518), MON1B (608954), ADAMTS18 (607512), NUDT7 (609231), CLEC3A (613588), WWOX (605131), MAF (177075), MAFTRR (616264), DYNLRB2 (607168), CENPN (611509), ATMIN (614693), GCSH (238330), PKD1L2 (607894), BCO1 (605748), GAN (605379), CMIP (610112), PLCG2 (600220), SDR42E1 (616164), HSD17B2 (109685), MPHOSPH6 (605500), CDH13 (601364), HSBP1 (604553), MLYCD (606761), OSGIN1 (607975), SLC38A8 (615585), MBTPS1 (603355), DNAAF1 (613190), TAF1C (604905), KCNG4 (607603), WFDC1 (605322), ATP2C2 (613082), COTL1 (606748), USP10 (609818), CRISPLD2 (612434), ZDHHC7 (614604), KIAA0513 (611675), FAM92B (617274), GSE1 (616886), GINS2 (610609), EMC8 (604886), COX4I1 (123864), IRF8 (601565), LINC01082 (614978), LINC01081 (614977), FENDRR (614975), FOXF1 (601089), MTHFSD (616820), FOXC2 (602402), FOXL1 (603252), FBXO31 (609102), MAP1LC3B (609604), JPH3 (605268), SLC7A5 (600182), CA5A (114761), BANP (611564), ZNF469 (612078), ZFPM1 (601950), IL17C (604628), CYBA (608508), MVD (603236), SNAI3 (612741), RNF166 (617178), CTU2 (617057), PIEZO1 (611184), CDT1 (605525), APRT (102600), GALNS (612222), TRAPPC2L (610970), CBFA2T3 (603870), ACSF3 (614245), CDH15 (114019), ANKRD11 (611192), SPG7 (602783), RPL13 (113703), CPNE7 (605689), DPEP1 (179780), CHMP1A (164010), SPATA33 (615409), CDK10 (603464), ZNF276 (608460), FANCA (607139), SPIRE2 (609217), TCF25 (612326), MC1R (155555), TUBB3 (602661), AFG3L1P (603020), GAS8 (605178), GAS8-AS1 (605179), URAHP (615805), PRDM7 (609759)	CytoRegions Not Set				false	arr[hg19] 16q22.1q24.3(68,923,530-90,158,005)x1-2	chr16:68923530-90158005
LST.OSCHP	1.67	Loss	X	p22.31	5850.861	461	35	TBL1X, GPR143, SHROOM2, CLDN34, WWC3, CLCN4, MID1, HCCS, ARHGAP6, AMELX, MIR548AX, MSL3, FRMPD4, PRPS2, TLR7, TLR8-AS1, TLR8, TMSB4X, FAM9C, LINC02154, GS1-600G8.3, ATXN3L, LINC01203, EGFL6, MIR6086, TCEANC, RAB9A, TRAPPC2, OFD1, GPM6B, GEMIN8, UBE2E4P, GLRA2, FANCB, MOSPD2	24	TBL1X (300196), GPR143 (300808), SHROOM2 (300103), CLCN4 (302910), MID1 (300552), HCCS (300056), ARHGAP6 (300118), AMELX (300391), MSL3 (300609), FRMPD4 (300838), PRPS2 (311860), TLR7 (300365), TLR8 (300366), TMSB4X (300159), FAM9C (300479), ATXN3L (300920), EGFL6 (300239), RAB9A (300284), TRAPPC2 (300202), OFD1 (300170), GPM6B (300051), GEMIN8 (300962), GLRA2 (305990), FANCB (300515)	CytoRegions Not Set				false	arr[hg19] Xp22.31p22.2(9,244,070-15,094,931)x1-2	chrX:9244070-15094931
LST.OSCHP	1.67	Loss	1	p31.3	50636.773	3858	390	UBE2U, CACHD1, MIR4794, RAVER2, JAK1, LINC01359, MIR3671, MIR101-1, AK4, DNAJC6, LEPROT, LEPR, PDE4B, LOC101927139, SGIP1, MIR3117, TCTEX1D1, INSL5, WDR78, MIER1, SLC35D1, C1orf141, IL23R, IL12RB2, SERBP1, GADD45A, GNG12, GNG12-AS1, DIRAS3, WLS, MIR1262, RPE65, DEPDC1, DEPDC1-AS1, LINC01707, LINC01758, LRRC7, PIN1P1, LRRC40, SRSF11, ANKRD13C, HHLA3, CTH, LINC01788, PTGER3, ZRANB2-AS1, ZRANB2, MIR186, ZRANB2-AS2, NEGR1, NEGR1-IT1, LINC01360, LINC02238, LRRIQ3, FPGT, FPGT-TNNI3K, TNNI3K, ERICH3, ERICH3-AS1, CRYZ, TYW3, LHX8, SLC44A5, ACADM, DLSTP1, RABGGTB, SNORD45C, SNORD45A, SNORD45B, MSH4, ASB17, LOC101927342, ST6GALNAC3, LINC02567, ST6GALNAC5, MIR7156, PIGK, AK5, ZZZ3, USP33, MIGA1, NEXN-AS1, NEXN, FUBP1, DNAJB4, GIPC2, MGC27382, PTGFR, IFI44L, IFI44, ADGRL4, LINC01781, LOC101927434, ADGRL2, LINC01362, LINC01361, LINC01712, LINC01725, LOC101927560, TTLL7, PRKACB, SAMD13, UOX, DNASE2B, RPF1, GNG5, SPATA1, CTBS, LINC01461, LINC01555, SSX2IP, LPAR3, MCOLN2, MCOLN3, WDR63, MIR4423, SYDE2, C1orf52, BCL10, LOC646626, DDAH1, CYR61, ZNHIT6, COL24A1, ODF2L, MIR7856, CLCA2, CLCA1, CLCA4, LOC105378828, CLCA3P, SH3GLB1, SELENOF, HS2ST1, LINC01140, LOC101927844, LMO4, LINC01364, PKN2-AS1, PKN2, GTF2B, KYAT3, RBMXL1, GBP3, GBP1, GBP2, GBP7, GBP4, GBP5, LOC729930, GBP6, GBP1P1, LRRC8B, LRRC8C-DT, LRRC8C, LRRC8D, GEMIN8P4, ZNF326, SNORD3G, BARHL2, LOC105378853, LINC01763, ZNF644, HFM1, CDC7, TGFBR3, BRDT, EPHX4, SETSIP, BTBD8, KIAA1107, C1orf146, GLMN, RPAP2, GFI1, EVI5, RPL5, FAM69A, SNORD21, SNORA66, MTF2, TMED5, CCDC18, CCDC18-AS1, DR1, FNBP1L, BCAR3, LOC100129046, MIG7, MIR760, DNTTIP2, GCLM, ABCA4, ARHGAP29, ABCD3, F3, SLC44A3-AS1, MIR378G, SLC44A3, CNN3, LOC729970, ALG14, LOC101928098, TMEM56, TMEM56-RWDD3, LOC101928118, RWDD3, LINC01760, LINC01650, LINC01761, LOC100996635, LOC102723661, LINC01787, PTBP2, DPYD, DPYD-AS1, DPYD-AS2, LINC01930, MIR137HG, MIR2682, MIR137, LINC01776, SNX7, PLPPR5, LOC100129620, PLPPR4, LINC01708, PALMD, MIR548AA1, FRRS1, AGL, SLC35A3, MFSD14A, SASS6, TRMT13, LRRC39, DBT, RTCA-AS1, RTCA, MIR553, CDC14A, GPR88, LINC01349, VCAM1, EXTL2, SLC30A7, DPH5, LOC102606465, LOC101928370, S1PR1, LINC01307, OLFM3, DNAJA1P5, COL11A1, LOC101928436, RNPC3, AMY2B, ACTG1P4, AMY2A, AMY1C, AMY1A, AMY1B, LOC100129138, LINC01676, LINC01677, LINC01661, PRMT6, NTNG1, VAV3, MIR7852, VAV3-AS1, SLC25A24, NBPF4, NBPF6, FAM102B, HENMT1, PRPF38B, FNDC7, STXBP3, AKNAD1, SPATA42, GPSM2, CLCC1, WDR47, TAF13, TMEM167B, SCARNA2, C1orf194, KIAA1324, SARS, CELSR2, PSRC1, MYBPHL, SORT1, PSMA5, SYPL2, ATXN7L2, CYB561D1, AMIGO1, GPR61, GNAI3, MIR197, GNAT2, AMPD2, GSTM4, GSTM2, GSTM1, GSTM5, GSTM3, EPS8L3, CSF1, AHCYL1, STRIP1, ALX3, LINC01397, UBL4B, SLC6A17, LINC02586, KCNC4, RBM15-AS1, RBM15, SLC16A4, LAMTOR5, LAMTOR5-AS1, PROK1, CYMP, CYMP-AS1, KCNA10, KCNA2, KCNA3, CD53, LRIF1, DRAM2, CEPT1, DENND2D, CHI3L2, CHIAP2, CHIA, PIFO, PGCP1, OVGP1, WDR77, ATP5PB, C1orf162, TMIGD3, ADORA3, LINC01160, RAP1A, INKA2, INKA2-AS1, LOC101928718, DDX20, KCND3, KCND3-IT1, KCND3-AS1, LINC01750, CTTNBP2NL, MIR4256, WNT2B, ST7L, CAPZA1, MOV10, RHOC, PPM1J, FAM19A3, LINC01356, SLC16A1, AKR7A2P1, SLC16A1-AS1, LOC100996251, LRIG2, LOC643441, MAGI3, PHTF1, RSBN1, AP4B1-AS1, PTPN22, BCL2L15, AP4B1, DCLRE1B, HIPK1-AS1, HIPK1, OLFML3, SYT6, TRIM33, BCAS2, DENND2C, AMPD1, NRAS, CSDE1	228	RAVER2 (609953), JAK1 (147795), MIR101-1 (612511), AK4 (103030), DNAJC6 (608375), LEPROT (613461), LEPR (601007), PDE4B (600127), SGIP1 (611540), INSL5 (606413), MIER1 (616848), SLC35D1 (610804), IL23R (607562), IL12RB2 (601642), SERBP1 (607378), GADD45A (126335), GNG12 (615405), GNG12-AS1 (615406), DIRAS3 (605193), WLS (611514), RPE65 (180069), DEPDC1 (612002), LRRC7 (614453), PIN1P1 (602051), SRSF11 (602010), ANKRD13C (615125), HHLA3 (604372), CTH (607657), PTGER3 (176806), ZRANB2 (604347), NEGR1 (613173), LRRIQ3 (617957), FPGT (603609), TNNI3K (613932), CRYZ (123691), TYW3 (611245), LHX8 (604425), ACADM (607008), RABGGTB (179080), MSH4 (602105), ST6GALNAC3 (610133), ST6GALNAC5 (610134), PIGK (605087), AK5 (608009), USP33 (615146), MIGA1 (616773), NEXN (613121), FUBP1 (603444), DNAJB4 (611327), PTGFR (600563), IFI44L (613975), IFI44 (610468), ADGRL4 (616419), ADGRL2 (607018), PRKACB (176892), DNASE2B (608057), GNG5 (600874), CTBS (600873), SSX2IP (608690), LPAR3 (605106), MCOLN2 (607399), MCOLN3 (607400), WDR63 (617968), BCL10 (603517), DDAH1 (604743), CYR61 (602369), COL24A1 (610025), CLCA2 (604003), CLCA1 (603906), CLCA4 (616857), CLCA3P (604337), SH3GLB1 (609287), SELENOF (606254), HS2ST1 (604844), LMO4 (603129), PKN2 (602549), GTF2B (189963), KYAT3 (610656), GBP3 (600413), GBP1 (600411), GBP2 (600412), GBP7 (612468), GBP4 (612466), GBP5 (611467), GBP6 (612467), LRRC8B (612888), LRRC8C (612889), LRRC8D (612890), ZNF326 (614601), BARHL2 (605212), ZNF644 (614159), HFM1 (615684), CDC7 (603311), TGFBR3 (600742), BRDT (602144), EPHX4 (617401), KIAA1107 (617945), GLMN (601749), RPAP2 (611476), GFI1 (600871), EVI5 (602942), RPL5 (603634), FAM69A (614542), SNORD21 (603635), MTF2 (609882), TMED5 (616876), DR1 (601482), FNBP1L (608848), BCAR3 (604704), DNTTIP2 (611199), GCLM (601176), ABCA4 (601691), ARHGAP29 (610496), ABCD3 (170995), F3 (134390), CNN3 (602374), ALG14 (612866), RWDD3 (615875), PTBP2 (608449), DPYD (612779), MIR137 (614304), SNX7 (614904), PLPPR5 (617287), PLPPR4 (607813), PALMD (610182), FRRS1 (611578), AGL (610860), SLC35A3 (605632), SASS6 (609321), DBT (248610), RTCA (611286), CDC14A (603504), GPR88 (607468), VCAM1 (192225), EXTL2 (602411), SLC30A7 (611149), DPH5 (611075), S1PR1 (601974), OLFM3 (607567), COL11A1 (120280), AMY2B (104660), AMY2A (104650), AMY1C (104702), AMY1A (104700), AMY1B (104701), PRMT6 (608274), NTNG1 (608818), VAV3 (605541), SLC25A24 (608744), NBPF4 (613994), NBPF6 (613996), HENMT1 (612178), STXBP3 (608339), GPSM2 (609245), CLCC1 (617539), WDR47 (615734), TAF13 (600774), KIAA1324 (611298), SARS (607529), CELSR2 (604265), PSRC1 (613126), SORT1 (602458), PSMA5 (176844), AMIGO1 (615689), GPR61 (606916), GNAI3 (139370), MIR197 (611189), GNAT2 (139340), AMPD2 (102771), GSTM4 (138333), GSTM2 (138380), GSTM1 (138350), GSTM5 (138385), GSTM3 (138390), EPS8L3 (614989), CSF1 (120420), AHCYL1 (607826), STRIP1 (617918), ALX3 (606014), UBL4B (611127), SLC6A17 (610299), KCNC4 (176265), RBM15 (606077), SLC16A4 (603878), LAMTOR5 (608521), PROK1 (606233), KCNA10 (602420), KCNA2 (176262), KCNA3 (176263), CD53 (151525), LRIF1 (615354), DRAM2 (613360), CEPT1 (616751), DENND2D (615111), CHI3L2 (601526), CHIA (606080), PIFO (614234), OVGP1 (603578), WDR77 (611734), ATP5PB (603270), ADORA3 (600445), RAP1A (179520), DDX20 (606168), KCND3 (605411), CTTNBP2NL (615100), WNT2B (601968), ST7L (617640), CAPZA1 (601580), MOV10 (610742), RHOC (165380), PPM1J (609957), FAM19A3 (617497), SLC16A1 (600682), LRIG2 (608869), MAGI3 (615943), PHTF1 (604950), RSBN1 (615858), PTPN22 (600716), AP4B1 (607245), DCLRE1B (609683), HIPK1 (608003), OLFML3 (610088), SYT6 (607718), TRIM33 (605769), BCAS2 (605783), AMPD1 (102770), NRAS (164790), CSDE1 (191510)	CytoRegions Not Set				false	arr[hg19] 1p31.3p13.2(64,660,315-115,297,088)x1-2	chr1:64660315-115297088
LST.OSCHP	1.67	Loss	17	q11.2	6232.204	515	102	UNC119, PIGS, ALDOC, SPAG5, SPAG5-AS1, SGK494, KIAA0100, SDF2, SUPT6H, PROCA1, RAB34, RPL23A, SNORD42B, SNORD4A, SNORD42A, SNORD4B, TLCD1, NEK8, TRAF4, FAM222B, ERAL1, MIR451A, MIR451B, MIR144, MIR4732, FLOT2, DHRS13, PHF12, LOC101927018, SEZ6, PIPOX, MYO18A, TIAF1, CRYBA1, NUFIP2, MIR4523, TAOK1, ABHD15, TP53I13, GIT1, ANKRD13B, CORO6, SSH2, EFCAB5, NSRP1, MIR423, MIR3184, SLC6A4, BLMH, TMIGD1, CPD, GOSR1, TBC1D29, SMURF2P1-LRRC37BP1, SH3GL1P2, SUZ12P1, CRLF3, ATAD5, TEFM, ADAP2, RNF135, DPRXP4, LOC107984974, LOC646030, MIR4733, NF1, OMG, EVI2B, EVI2A, RAB11FIP4, MIR4724, MIR193A, MIR4725, MIR365B, COPRS, UTP6, SUZ12, LRRC37B, SH3GL1P1, LOC105371730, RHOT1, ARGFXP2, RHBDL3, C17orf75, MIR632, ZNF207, PSMD11, CDK5R1, MYO1D, TMEM98, SPACA3, ASIC2, AA06, LINC01989, CCL2, CCL7, CCL11, CCL8, CCL13, CCL1, C17orf102, TMEM132E	60	UNC119 (604011), PIGS (610271), ALDOC (103870), SPAG5 (615562), KIAA0100 (610664), SDF2 (602934), SUPT6H (601333), PROCA1 (617376), RAB34 (610917), RPL23A (602326), NEK8 (609799), TRAF4 (602464), ERAL1 (607435), MIR451A (612071), MIR144 (612070), FLOT2 (131560), DHRS13 (616157), SEZ6 (616666), PIPOX (616713), MYO18A (610067), TIAF1 (609517), CRYBA1 (123610), NUFIP2 (609356), TAOK1 (610266), GIT1 (608434), ANKRD13B (615124), SSH2 (606779), NSRP1 (616173), SLC6A4 (182138), BLMH (602403), CPD (603102), GOSR1 (604026), CRLF3 (614853), ATAD5 (609534), TEFM (616422), ADAP2 (608635), RNF135 (611358), NF1 (613113), OMG (164345), EVI2B (158381), EVI2A (158380), RAB11FIP4 (611999), MIR193A (614733), SUZ12 (606245), LRRC37B (616558), RHOT1 (613888), ZNF207 (603428), PSMD11 (604449), CDK5R1 (603460), MYO1D (606539), TMEM98 (615949), SPACA3 (612749), ASIC2 (601784), CCL2 (158105), CCL7 (158106), CCL11 (601156), CCL8 (602283), CCL13 (601391), CCL1 (182281), TMEM132E (616178)	CytoRegions Not Set				false	arr[hg19] 17q11.2q12(26,865,505-33,097,709)x1-2	chr17:26865505-33097709
LST.OSCHP	1.67	Loss	17	q21.33	30912.27	2488	462	UTP18, LINC02071, LINC02072, LINC02073, CA10, LINC01982, LINC02089, C17orf112, KIF2B, TOM1L1, COX11, STXBP4, HLF, MMD, TMEM100, PCTP, ANKFN1, NOG, C17orf67, DGKE, MTVR2, TRIM25, MIR3614, COIL, SCPEP1, RNF126P1, AKAP1, MSI2, LOC101927557, LOC101927539, CCDC182, MRPS23, CUEDC1, VEZF1, SRSF1, LOC101927666, DYNLL2, OR4D1, MSX2P1, OR4D2, EPX, MKS1, LPO, MPO, TSPOAP1, TSPOAP1-AS1, MIR142, MIR4736, SUPT4H1, RNF43, HSF5, MTMR4, SEPT4-AS1, SEPT4, C17orf47, TEX14, RAD51C, PPM1E, TRIM37, SKA2, MIR454, MIR301A, PRR11, SMG8, GDPD1, YPEL2, MIR4729, LINC01476, DHX40, CLTC, PTRH2, VMP1, MIR21, TUBD1, RPS6KB1, RNFT1, TBC1D3P1-DHX40P1, RNFT1-DT, MIR4737, HEATR6, LOC105371849, WFDC21P, LOC653653, CA4, USP32, SCARNA20, C17orf64, APPBP2, LINC01999, PPM1D, BCAS3, LOC101927855, TBX2-AS1, TBX2, C17orf82, TBX4, NACA2, BRIP1, INTS2, MED13, TBC1D3P2, EFCAB3, METTL2A, TLK2, MRC2, MARCH10, LOC105371855, LOC101927877, MIR633, TANC2, CYB561, ACE, KCNH6, DCAF7, TACO1, MAP3K3, LIMD2, LOC729683, STRADA, CCDC47, DDX42, FTSJ3, PSMC5, SMARCD2, TCAM1P, CSH2, GH2, CSH1, CSHL1, GH1, CD79B, SCN4A, PRR29-AS1, PRR29, ICAM2, ERN1, SNHG25, SNORD104, SNORA50C, TEX2, PECAM1, MILR1, POLG2, DDX5, MIR3064, MIR5047, CEP95, SMURF2, ARHGAP27P1-BPTFP1-KPNA2P3, ARHGAP27P1, MIR6080, PLEKHM1P1, MIR4315-1, MIR4315-2, LRRC37A3, AMZ2P1, GNA13, LOC100507002, RGS9, LINC02563, AXIN2, CEP112, APOH, PRKCA, PRKCA-AS1, MIR634, CACNG5, CACNG4, CACNG1, HELZ, LOC101928021, PSMD12, PITPNC1, MIR548AA2, MIR548D2, NOL11, SNORA38B, BPTF, C17orf58, KPNA2, LINC00674, ARHGAP27P2, AMZ2, ARSG, SLC16A6, PRKAR1A, WIPI1, MIR635, FAM20A, LINC01482, ABCA8, ABCA9, ABCA9-AS1, ABCA6, MIR4524B, MIR4524A, ABCA10, PRO1804, ABCA5, MAP2K6, LOC105371880, LINC01483, LINC01497, LINC01028, KCNJ16, KCNJ2-AS1, KCNJ2, CASC17, ROCR, LINC01152, LOC102723517, SOX9-AS1, LINC02097, SOX9, LINC02003, LINC00673, LINC00511, SLC39A11, SSTR2, COG1, FAM104A, C17orf80, CPSF4L, CDC42EP4, SDK2, LOC101928251, LOC100134391, LINC00469, LINC02092, RPL38, MGC16275, TTYH2, DNAI2, KIF19, BTBD17, GPR142, GPRC5C, CD300A, CD300LB, CD300C, CD300H, LOC100130520, CD300LD, C17orf77, CD300E, RAB37, CD300LF, SLC9A3R1, MIR3615, NAT9, TMEM104, GRIN2C, FDXR, FADS6, USH1G, OTOP2, OTOP3, HID1, HID1-AS1, CDR2L, MRPL58, KCTD2, ATP5PD, SLC16A5, ARMC7, NT5C, JPT1, SUMO2, NUP85, GGA3, MRPS7, MIF4GD, LOC100287042, SLC25A19, GRB2, MIR3678, TMEM94, MIR6785, CASKIN2, TSEN54, LLGL2, MYO15B, RECQL5, SMIM5, SMIM6, SAP30BP, ITGB4, GALK1, H3F3B, MIR4738, UNK, UNC13D, WBP2, TRIM47, TRIM65, MRPL38, FBF1, ACOX1, TEN1, TEN1-CDK3, CDK3, MIR4538, EVPL, SRP68, GALR2, ZACN, EXOC7, MIR6868, FOXJ1, RNF157-AS1, RNF157, UBALD2, QRICH2, PRPSAP1, SPHK1, UBE2O, AANAT, RHBDF2, CYGB, PRCD, SNHG16, SNORD1C, SNORD1B, SNORD1A, ST6GALNAC2, ST6GALNAC1, LOC105274304, MXRA7, JMJD6, METTL23, SRSF2, MIR636, MFSD11, LINC02080, LINC00868, MGAT5B, LOC105371899, SNHG20, SEC14L1, SCARNA16, MIR6516, LOC105371907, SEPT9, MIR4316, LOC400622, LOC100507351, LINC01987, LINC01973, TNRC6C, TNRC6C-AS1, TMC6, TMC8, C17orf99, SYNGR2, TK1, AFMID, BIRC5, TMEM235, LINC01993, SOCS3, LOC101928674, PGS1, DNAH17, DNAH17-AS1, LINC02081, CYTH1, USP36, TIMP2, CEP295NL, LGALS3BP, CANT1, C1QTNF1-AS1, C1QTNF1, ENGASE, RBFOX3, MIR4739, LINC02078, ENPP7, CBX2, CBX8, LINC01977, CBX4, LINC01979, LINC01978, TBC1D16, CCDC40, GAA, EIF4A3, CARD14, SGSH, SLC26A11, RNF213, LOC100294362, ENDOV, MIR4730, NPTX1, RPTOR, LOC101928855, LOC400627, CHMP6, BAIAP2-DT, BAIAP2, AATK, MIR657, MIR3065, MIR338, MIR1250, PVALEF, CEP131, TEPSIN, LOC105371925, NDUFAF8, SLC38A10, LINC00482, TMEM105, LOC100130370, BAHCC1, MIR4740, MIR3186, ACTG1, FSCN2, FAAP100, NPLOC4, TSPAN10, PDE6G, OXLD1, CCDC137, ARL16, HGS, MIR6786, MRPL12, SLC25A10, GCGR, MCRIP1, PPP1R27, P4HB, ARHGDIA, ALYREF, ANAPC11, PCYT2, NPB, SIRT7, MAFG, MAFG-DT, PYCR1, MYADML2, NOTUM, ASPSCR1, CENPX, LRRC45, RAC3, DCXR, RFNG, GPS1, DUS1L, FASN, SNORD134, CCDC57, SLC16A3, MIR6787, CSNK1D, LINC01970	259	UTP18 (612816), CA10 (604642), KIF2B (615142), TOM1L1 (604701), COX11 (603648), STXBP4 (610415), HLF (142385), MMD (604467), TMEM100 (616334), PCTP (606055), NOG (602991), DGKE (601440), TRIM25 (600453), COIL (600272), AKAP1 (602449), MSI2 (607897), MRPS23 (611985), VEZF1 (606747), SRSF1 (600812), DYNLL2 (608942), EPX (131399), MKS1 (609883), LPO (150205), MPO (606989), TSPOAP1 (610764), MIR142 (615657), SUPT4H1 (603555), RNF43 (612482), MTMR4 (603559), SEPT4 (603696), TEX14 (605792), RAD51C (602774), TRIM37 (605073), SKA2 (616674), MIR301A (615675), PRR11 (615920), SMG8 (613175), GDPD1 (616317), YPEL2 (609723), DHX40 (607570), CLTC (118955), PTRH2 (608625), VMP1 (611753), MIR21 (611020), TUBD1 (607344), RPS6KB1 (608938), RNFT1 (615172), WFDC21P (615772), CA4 (114760), USP32 (607740), APPBP2 (605324), PPM1D (605100), BCAS3 (607470), TBX2 (600747), TBX4 (601719), NACA2 (609274), BRIP1 (605882), INTS2 (611346), MED13 (603808), TLK2 (608439), MRC2 (612264), MARCH10 (613337), TANC2 (615047), CYB561 (600019), ACE (106180), KCNH6 (608168), DCAF7 (605973), TACO1 (612958), MAP3K3 (602539), STRADA (608626), DDX42 (613369), PSMC5 (601681), SMARCD2 (601736), TCAM1P (612756), CSH2 (118820), GH2 (139240), CSH1 (150200), CSHL1 (603515), GH1 (139250), CD79B (147245), SCN4A (603967), ICAM2 (146630), ERN1 (604033), PECAM1 (173445), POLG2 (604983), DDX5 (180630), SMURF2 (605532), LRRC37A3 (616557), GNA13 (604406), RGS9 (604067), AXIN2 (604025), APOH (138700), PRKCA (176960), CACNG5 (606405), CACNG4 (606404), CACNG1 (114209), HELZ (606699), PSMD12 (604450), PITPNC1 (605134), NOL11 (615366), BPTF (601819), KPNA2 (600685), AMZ2 (615169), ARSG (610008), SLC16A6 (603880), PRKAR1A (188830), WIPI1 (609224), FAM20A (611062), ABCA8 (612505), ABCA9 (612507), ABCA6 (612504), ABCA10 (612508), ABCA5 (612503), MAP2K6 (601254), KCNJ16 (605722), KCNJ2 (600681), SOX9 (608160), LINC00673 (617079), SLC39A11 (616508), SSTR2 (182452), COG1 (606973), CDC42EP4 (605468), SDK2 (607217), RPL38 (604182), TTYH2 (608855), DNAI2 (605483), GPR142 (609046), GPRC5C (605949), CD300A (606790), CD300LB (610705), CD300C (606786), CD300H (616560), CD300LD (616301), CD300E (609801), RAB37 (609956), CD300LF (609807), SLC9A3R1 (604990), GRIN2C (138254), FDXR (103270), USH1G (607696), OTOP2 (607827), OTOP3 (607828), HID1 (605752), MRPL58 (603000), KCTD2 (613422), SLC16A5 (603879), NT5C (191720), SUMO2 (603042), NUP85 (170285), GGA3 (606006), MRPS7 (611974), MIF4GD (612072), SLC25A19 (606521), GRB2 (108355), CASKIN2 (612185), TSEN54 (608755), RECQL5 (603781), SAP30BP (610218), ITGB4 (147557), GALK1 (604313), H3F3B (601058), UNK (616375), UNC13D (608897), WBP2 (606962), TRIM47 (611041), MRPL38 (611844), FBF1 (616807), ACOX1 (609751), TEN1 (613130), CDK3 (123828), EVPL (601590), SRP68 (604858), GALR2 (603691), ZACN (610935), EXOC7 (608163), FOXJ1 (602291), PRPSAP1 (601249), SPHK1 (603730), UBE2O (617649), AANAT (600950), RHBDF2 (614404), CYGB (608759), PRCD (610598), ST6GALNAC2 (610137), ST6GALNAC1 (610138), JMJD6 (604914), METTL23 (615262), SRSF2 (600813), MGAT5B (612441), SEC14L1 (601504), SEPT9 (604061), TNRC6C (610741), TMC6 (605828), TMC8 (605829), SYNGR2 (603926), TK1 (188300), BIRC5 (603352), SOCS3 (604176), PGS1 (614942), DNAH17 (610063), CYTH1 (182115), USP36 (612543), TIMP2 (188825), LGALS3BP (600626), CANT1 (613165), C1QTNF1 (610365), ENGASE (611898), RBFOX3 (616999), ENPP7 (616997), CBX2 (602770), CBX8 (617354), CBX4 (603079), TBC1D16 (616637), CCDC40 (613799), GAA (606800), EIF4A3 (608546), CARD14 (607211), SGSH (605270), SLC26A11 (610117), RNF213 (613768), NPTX1 (602367), RPTOR (607130), CHMP6 (610901), BAIAP2 (605475), AATK (605276), MIR338 (614059), CEP131 (613479), SLC38A10 (616525), BAHCC1 (617646), ACTG1 (102560), FSCN2 (607643), FAAP100 (611301), NPLOC4 (606590), PDE6G (180073), CCDC137 (614271), HGS (604375), MRPL12 (602375), SLC25A10 (606794), GCGR (138033), MCRIP1 (616514), P4HB (176790), ARHGDIA (601925), ALYREF (604171), ANAPC11 (614534), PCYT2 (602679), NPB (607996), SIRT7 (606212), MAFG (602020), PYCR1 (179035), NOTUM (609847), ASPSCR1 (606236), CENPX (615128), RAC3 (602050), DCXR (608347), RFNG (602578), GPS1 (601934), FASN (600212), SLC16A3 (603877), CSNK1D (600864)	CytoRegions Not Set				false	arr[hg19] 17q21.33q25.3(49,351,157-80,263,427)x1-2	chr17:49351157-80263427
LST.OSCHP	1.67	Loss	10	p15.3	3119.479	272	23	ZMYND11, DIP2C, LOC101930421, MIR5699, PRR26, LARP4B, LOC101927762, GTPBP4, IDI2, IDI2-AS1, IDI1, WDR37, LINC00200, ADARB2, ADARB2-AS1, LINC00700, MIR6072, LINC00701, LOC105376351, PFKP, SNORD142, PITRM1, PITRM1-AS1	8	ZMYND11 (608668), DIP2C (611380), LARP4B (616513), IDI2 (615389), IDI2-AS1 (615391), IDI1 (604055), ADARB2 (602065), PFKP (171840)	CytoRegions Not Set				false	arr[hg19] 10p15.3p15.2(126,069-3,245,548)x1-2	chr10:126069-3245548
LST.OSCHP	1.33	Loss	1	p36.13	20995.005	1812	361	FBXO42, SZRD1, SPATA21, NECAP2, LINC01772, CROCCP3, LOC440570, LINC01783, FAM231BP, MIR3675, NBPF1, CROCCP2, MST1P2, FAM231AP, LOC102723383, FAM231C, ESPNP, MST1L, LOC102724562, LOC105376805, CROCC, MFAP2, ATP13A2, SDHB, PADI2, LOC400743, PADI1, PADI3, MIR3972, PADI4, PADI6, RCC2, ARHGEF10L, ACTL8, LINC01654, IGSF21, KLHDC7A, PAX7, TAS1R2, ALDH4A1, MIR4695, MIR1290, IFFO2, UBR4, LOC101927895, EMC1, MRTO4, AKR7L, AKR7A3, LOC100506730, AKR7A2, PQLC2, CAPZB, LOC105378614, MINOS1, MINOS1-NBL1, RPS14P3, NBL1, HTR6, TMCO4, RNF186, OTUD3, PLA2G2E, PLA2G2A, PLA2G5, PLA2G2D, PLA2G2F, PLA2G2C, UBXN10-AS1, UBXN10, LINC01757, VWA5B1, LINC01141, CAMK2N1, MUL1, FAM43B, CDA, PINK1, MIR6084, PINK1-AS, DDOST, KIF17, SH2D5, HP1BP3, EIF4G3, MIR1256, ECE1, LOC100506801, NBPF3, ALPL, RAP1GAP, USP48, LDLRAD2, HSPG2, CELA3B, CELA3A, LINC01635, LINC00339, CDC42, WNT4, MIR4418, ZBTB40, EPHA8, MIR6127, C1QA, C1QC, C1QB, EPHB2, MIR4684, MIR4253, LACTBL1, TEX46, KDM1A, MIR3115, LUZP1, HTR1D, LINC01355, HNRNPR, ZNF436, ZNF436-AS1, TCEA3, ASAP3, E2F2, LOC101928163, ID3, MDS2, RPL11, ELOA, ELOA-AS1, PITHD1, LYPLA2, GALE, HMGCL, FUCA1, CNR2, MIR378F, PNRC2, SRSF10, MYOM3, IL22RA1, IFNLR1, LOC284632, GRHL3, STPG1, NIPAL3, RCAN3AS, RCAN3, LOC100506985, NCMAP, SRRM1, CLIC4, RUNX3, MIR6731, MIR4425, SYF2, RSRP1, RHD, TMEM50A, RHCE, MACO1, LDLRAP1, MAN1C1, SELENON, MTFR1L, LOC646471, AUNIP, PAQR7, STMN1, MIR3917, PAFAH2, EXTL1, SLC30A2, TRIM63, PDIK1L, FAM110D, ZNF593, CNKSR1, CATSPER4, LOC101928303, CEP85, SH3BGRL3, UBXN11, CD52, CRYBG2, ZNF683, LIN28A, DHDDS, LOC101928324, HMGN2, RPS6KA1, MIR1976, LOC101928728, ARID1A, PIGV, ZDHHC18, SFN, GPN2, GPATCH3, NR0B2, NUDC, KDF1, TRNP1, TENT5B, SLC9A1, WDTC1, TMEM222, ACTG1P20, SYTL1, MAP3K6, FCN3, CD164L2, GPR3, WASF2, AHDC1, FGR, LINC02574, IFI6, FAM76A, STX12, PPP1R8, SCARNA1, THEMIS2, RPA2, SMPDL3B, XKR8, EYA3, PTAFR, DNAJC8, ATP5IF1, SESN2, MED18, PHACTR4, SNHG3, RCC1, SNORA73B, TRNAU1AP, SNHG12, SNORD99, SNORA61, SNORA44, SNORA16A, RAB42, TAF12, LINC01715, RNU11, GMEB1, YTHDF2, OPRD1, EPB41, TMEM200B, SRSF4, MECR, PTPRU, LINC01756, LINC01648, MATN1, MATN1-AS1, LAPTM5, MIR4420, LINC01778, SDC3, PUM1, SNORD103A, SNORD103B, SNORD103C, NKAIN1, SNRNP40, ZCCHC17, FABP3, SERINC2, LINC01225, LINC01226, TINAGL1, HCRTR1, PEF1, COL16A1, ADGRB2, MIR4254, SPOCD1, PTP4A2, KHDRBS1, TMEM39B, MIR5585, KPNA6, TXLNA, CCDC28B, IQCC, DCDC2B, TMEM234, EIF3I, MTMR9LP, FAM167B, LCK, HDAC1, MARCKSL1, FAM229A, TSSK3, BSDC1, ZBTB8B, ZBTB8A, ZBTB8OS, RBBP4, SYNC, KIAA1522, YARS, S100PBP, FNDC5, HPCA, TMEM54, RNF19B, AK2, AZIN2, TRIM62, ZNF362, A3GALT2, PHC2, MIR3605, LOC101929464, ZSCAN20, CSMD2, HMGB4, CSMD2-AS1, C1orf94, MIR552, GJB5, GJB4, GJB3, GJA4, SMIM12, DLGAP3, LOC653160, TMEM35B, ZMYM6, ZMYM1, SFPQ, ZMYM4, ZMYM4-AS1, KIAA0319L, NCDN, TFAP2E, PSMB2, C1orf216, CLSPN, AGO4, AGO1, AGO3, TEKT2, ADPRHL2, COL8A2, TRAPPC3, MAP7D1, THRAP3, SH3D21, EVA1B, STK40, LSM10, OSCP1, SNORA63C, MRPS15, CSF3R, GRIK3	215	FBXO42 (609109), NECAP2 (611624), NBPF1 (610501), CROCC (615776), MFAP2 (156790), ATP13A2 (610513), SDHB (185470), PADI2 (607935), PADI1 (607934), PADI3 (606755), PADI4 (605347), PADI6 (610363), RCC2 (609587), ARHGEF10L (612494), PAX7 (167410), TAS1R2 (606226), ALDH4A1 (606811), UBR4 (609890), EMC1 (616846), AKR7L (608478), AKR7A3 (608477), AKR7A2 (603418), PQLC2 (614760), CAPZB (601572), MINOS1 (616574), NBL1 (600613), HTR6 (601109), RNF186 (617163), OTUD3 (611758), PLA2G2A (172411), PLA2G5 (601192), PLA2G2D (605630), PLA2G2F (616793), UBXN10 (616783), CAMK2N1 (614986), MUL1 (612037), CDA (123920), PINK1 (608309), DDOST (602202), KIF17 (605037), HP1BP3 (616072), EIF4G3 (603929), ECE1 (600423), NBPF3 (612992), ALPL (171760), RAP1GAP (600278), USP48 (617445), HSPG2 (142461), CDC42 (116952), WNT4 (603490), ZBTB40 (612106), EPHA8 (176945), C1QA (120550), C1QC (120575), C1QB (120570), EPHB2 (600997), KDM1A (609132), LUZP1 (601422), HTR1D (182133), HNRNPR (607201), ZNF436 (611703), TCEA3 (604128), ASAP3 (616594), E2F2 (600426), ID3 (600277), MDS2 (607305), RPL11 (604175), ELOA (600786), LYPLA2 (616143), GALE (606953), HMGCL (613898), FUCA1 (612280), CNR2 (605051), PNRC2 (611882), SRSF10 (605221), MYOM3 (616832), IL22RA1 (605457), IFNLR1 (607404), GRHL3 (608317), STPG1 (615826), RCAN3 (605860), SRRM1 (605975), CLIC4 (606536), RUNX3 (600210), SYF2 (607090), RHD (111680), TMEM50A (605348), RHCE (111700), MACO1 (610301), LDLRAP1 (605747), MAN1C1 (616772), SELENON (606210), PAQR7 (607779), STMN1 (151442), PAFAH2 (602344), EXTL1 (601738), SLC30A2 (609617), TRIM63 (606131), PDIK1L (610785), ZNF593 (616698), CNKSR1 (603272), CATSPER4 (609121), SH3BGRL3 (615679), UBXN11 (609151), CD52 (114280), ZNF683 (616775), LIN28A (611043), DHDDS (608172), HMGN2 (163910), RPS6KA1 (601684), ARID1A (603024), PIGV (610274), SFN (601290), GPATCH3 (617486), NR0B2 (604630), NUDC (610325), KDF1 (616758), TRNP1 (616824), SLC9A1 (107310), SYTL1 (608042), MAP3K6 (604468), FCN3 (604973), GPR3 (600241), WASF2 (605875), AHDC1 (615790), FGR (164940), IFI6 (147572), STX12 (606892), PPP1R8 (602636), THEMIS2 (617856), RPA2 (179836), SMPDL3B (617737), EYA3 (601655), PTAFR (173393), ATP5IF1 (614981), SESN2 (607767), MED18 (612384), PHACTR4 (608726), SNHG3 (603238), RCC1 (179710), SNORA73B (603239), TAF12 (600773), GMEB1 (604409), YTHDF2 (610640), OPRD1 (165195), EPB41 (130500), SRSF4 (601940), MECR (608205), PTPRU (602454), MATN1 (115437), LAPTM5 (601476), SDC3 (186357), PUM1 (607204), NKAIN1 (612871), SNRNP40 (607797), FABP3 (134651), SERINC2 (614549), TINAGL1 (616064), HCRTR1 (602392), PEF1 (610033), COL16A1 (120326), ADGRB2 (602683), PTP4A2 (601584), KHDRBS1 (602489), KPNA6 (610563), TXLNA (608676), CCDC28B (610162), EIF3I (603911), LCK (153390), HDAC1 (601241), MARCKSL1 (602940), TSSK3 (607660), BSDC1 (617518), ZBTB8OS (615891), RBBP4 (602923), SYNC (611750), YARS (603623), S100PBP (611889), FNDC5 (611906), HPCA (142622), RNF19B (610872), AK2 (103020), AZIN2 (608353), TRIM62 (616755), PHC2 (602979), ZSCAN20 (611315), CSMD2 (608398), HMGB4 (617285), GJB5 (604493), GJB4 (605425), GJB3 (603324), GJA4 (121012), DLGAP3 (611413), ZMYM6 (613567), SFPQ (605199), ZMYM4 (613568), KIAA0319L (613535), NCDN (608458), TFAP2E (614428), PSMB2 (602175), CLSPN (605434), AGO4 (607356), AGO1 (606228), AGO3 (607355), TEKT2 (608953), ADPRHL2 (610624), COL8A2 (120252), TRAPPC3 (610955), THRAP3 (603809), STK40 (609437), LSM10 (617909), OSCP1 (608854), MRPS15 (611979), CSF3R (138971), GRIK3 (138243)	CytoRegions Not Set				false	arr[hg19] 1p36.13p34.3(16,610,436-37,605,441)x1-2	chr1:16610436-37605441
LST.OSCHP	1.33	Loss	11	p12	19601.816	1093	244	LRRC4C, LINC01499, LOC101928591, LOC100507205, HNRNPKP3, API5, TTC17, MIR670, MIR670HG, MIR129-2, HSD17B12, ALKBH3, SEC14L1P1, ALKBH3-AS1, C11orf96, ACCSL, ACCS, EXT2, ALX4, CD82, TSPAN18, TP53I11, LOC221122, PRDM11, SYT13, LOC101928812, LOC399886, CHST1, MIR7154, LOC100507384, DKFZp779M0652, SLC35C1, CRY2, MAPK8IP1, C11orf94, PEX16, LARGE2, PHF21A, LOC101928894, CREB3L1, DGKZ, MIR4688, MDK, CHRM4, AMBRA1, MIR3160-1, MIR3160-2, HARBI1, ATG13, ARHGAP1, ZNF408, F2, CKAP5, MIR5582, SNORD67, LRP4-AS1, LRP4, C11orf49, ARFGAP2, PACSIN3, MIR6745, DDB2, ACP2, NR1H3, MADD, LOC101928943, MYBPC3, SPI1, MIR4487, SLC39A13, PSMC3, RAPSN, CELF1, PTPMT1, KBTBD4, NDUFS3, FAM180B, C1QTNF4, MTCH2, AGBL2, FNBP4, NUP160, PTPRJ, MIR3161, OR4B1, OR4X2, OR4X1, OR4S1, OR4C3, OR4C45, OR4C5, OR4A47, TRIM49B, TRIM64C, FOLH1, LOC440040, OR4C13, OR4C12, LOC441601, LOC646813, OR4A5, OR4C46, TRIM48, TRIM51HP, OR4A16, OR4A15, OR4C15, OR4C16, OR4C11, OR4P4, OR4S2, OR4C6, OR5D13, OR5D14, OR5L1, OR5D18, OR5L2, OR5D16, TRIM51, OR5W2, OR5I1, OR10AG1, OR7E5P, OR5F1, OR5AS1, OR8I2, OR8H2, OR8H3, OR8J3, OR8K5, OR5J2, OR5T2, OR5T3, OR5T1, OR8H1, OR8K3, OR8K1, OR8J1, OR8U8, OR8U1, OR5AL1, OR5R1, OR5M9, OR5M3, OR5M8, OR5M11, OR5M10, OR5M1, OR5AP2, OR5AR1, OR9G1, OR9G9, OR9G4, MIR6128, LOC101927120, OR5AK2, OR5AK4P, LRRC55, APLNR, TNKS1BP1, SSRP1, P2RX3, PRG3, PRG2, SLC43A3, RTN4RL2, SLC43A1, TIMM10, SMTNL1, UBE2L6, SERPING1, MIR130A, YPEL4, CLP1, ZDHHC5, MED19, TMX2, TMX2-CTNND1, SELENOH, BTBD18, CTNND1, OR9Q1, OR6Q1, OR9I1, OR9Q2, OR1S2, OR1S1, OR10Q1, OR10W1, OR5B17, OR5B3, OR5B2, OR5B12, OR5B21, LPXN, ZFP91, ZFP91-CNTF, CNTF, GLYAT, GLYATL2, GLYATL1, LOC283194, GLYATL1B, FAM111B, FAM111A-DT, FAM111A, DTX4, MPEG1, OR5AN1, OR5A2, OR5A1, OR4D6, OR4D10, OR4D11, OR4D9, OSBP, MIR3162, PATL1, OR10V1, OR10V2P, STX3, MRPL16, GIF, TCN1, OOSP1, OOSP2, MS4A3, MS4A2, MS4A6A, MS4A4E, MIR6503, MS4A4A, MS4A6E, MS4A7, MS4A14, MS4A5, MS4A1, MS4A12, MS4A13, LINC00301, MS4A8, MS4A18, MS4A15, MS4A10	104	LRRC4C (608817), API5 (609774), HSD17B12 (609574), ALKBH3 (610603), ACCS (608405), EXT2 (608210), ALX4 (605420), CD82 (600623), TP53I11 (617867), PRDM11 (616347), SYT13 (607716), CHST1 (603797), SLC35C1 (605881), CRY2 (603732), MAPK8IP1 (604641), PEX16 (603360), LARGE2 (609709), PHF21A (608325), CREB3L1 (616215), DGKZ (601441), MDK (162096), CHRM4 (118495), AMBRA1 (611359), HARBI1 (615086), ATG13 (615088), ARHGAP1 (602732), ZNF408 (616454), F2 (176930), CKAP5 (611142), LRP4 (604270), ARFGAP2 (606908), PACSIN3 (606513), DDB2 (600811), ACP2 (171650), NR1H3 (602423), MADD (603584), MYBPC3 (600958), SPI1 (165170), SLC39A13 (608735), PSMC3 (186852), RAPSN (601592), CELF1 (601074), PTPMT1 (609538), KBTBD4 (617645), NDUFS3 (603846), C1QTNF4 (614911), MTCH2 (613221), AGBL2 (617345), FNBP4 (615265), NUP160 (607614), PTPRJ (600925), FOLH1 (600934), OR4C46 (614273), OR5I1 (608496), OR5F1 (608492), LRRC55 (615213), APLNR (600052), TNKS1BP1 (607104), SSRP1 (604328), P2RX3 (600843), PRG3 (606814), PRG2 (605601), RTN4RL2 (610462), SLC43A1 (603733), TIMM10 (602251), SMTNL1 (613664), UBE2L6 (603890), SERPING1 (606860), MIR130A (610175), YPEL4 (609725), CLP1 (608757), ZDHHC5 (614586), MED19 (612385), TMX2 (616715), SELENOH (607914), CTNND1 (601045), LPXN (605390), CNTF (118945), GLYAT (607424), GLYATL2 (614762), GLYATL1 (614761), FAM111B (615584), FAM111A (615292), DTX4 (616110), MPEG1 (610390), OR5AN1 (615702), OSBP (167040), PATL1 (614660), STX3 (600876), MRPL16 (611829), GIF (609342), TCN1 (189905), MS4A3 (606498), MS4A2 (147138), MS4A6A (606548), MS4A4E (608401), MS4A4A (606547), MS4A6E (608402), MS4A7 (606502), MS4A5 (606499), MS4A1 (112210), MS4A12 (606550), MS4A8 (606549), MS4A10 (608403)	CytoRegions Not Set				false	arr[hg19] 11p12q12.2(40,993,374-60,595,190)x1-2	chr11:40993374-60595190
LST.OSCHP	1.33	Loss	9	p23	2773.023	188	3	PTPRD, LOC105375972, PTPRD-AS2	1	PTPRD (601598)	CytoRegions Not Set				false	arr[hg19] 9p23(9,223,808-11,996,831)x1-2	chr9:9223808-11996831
LST.OSCHP	1.33	Loss	9	p24.1	276.591	64	3	RCL1, MIR101-2, JAK2	3	RCL1 (611405), MIR101-2 (612512), JAK2 (147796)	CytoRegions Not Set				false	arr[hg19] 9p24.1(4,832,940-5,109,531)x1-2	chr9:4832940-5109531
LST.OSCHP	1.33	Loss	9	p24.1	767.237	53	4	TPD52L3, UHRF2, GLDC, KDM4C	4	TPD52L3 (617567), UHRF2 (615211), GLDC (238300), KDM4C (605469)	CytoRegions Not Set				false	arr[hg19] 9p24.1(6,290,672-7,057,909)x1-2	chr9:6290672-7057909
LST.OSCHP	1.33	Loss	14	q32.33	88.086	19	0		0		CytoRegions Not Set				false	arr[hg19] 14q32.33(106,484,806-106,572,892)x1-2	chr14:106484806-106572892
LST.OSCHP	0.67	Loss	18	p11.31	258.381	18	5	AKAIN1, LINC00526, LINC00667, ZBTB14, EPB41L3	3	AKAIN1 (616427), ZBTB14 (602126), EPB41L3 (605331)	CytoRegions Not Set				false	arr[hg19] 18p11.31(5,193,259-5,451,640)x0-1	chr18:5193259-5451640
LST.OSCHP	0.67	Loss	17	p12	876.838	106	7	DNAH9, ZNF18, MAP2K4, MIR744, LINC00670, MYOCD, LOC101928418	4	DNAH9 (603330), ZNF18 (194524), MAP2K4 (601335), MYOCD (606127)	CytoRegions Not Set				false	arr[hg19] 17p12(11,709,494-12,586,332)x0-1	chr17:11709494-12586332
LST.OSCHP	0.67	Loss	18	q11.2	7019.422	558	25	LAMA3, TTC39C, TTC39C-AS1, CABYR, OSBPL1A, MIR320C2, IMPACT, HRH4, LINC01915, LOC105372028, LINC01894, ZNF521, SS18, PSMA8, TAF4B, LINC01543, KCTD1, MIR8057, PCAT18, AQP4, AQP4-AS1, CHST9, LOC105372038, CDH2, MIR302F	14	LAMA3 (600805), CABYR (612135), OSBPL1A (606730), IMPACT (615319), HRH4 (606792), ZNF521 (610974), SS18 (600192), PSMA8 (617841), TAF4B (601689), KCTD1 (613420), PCAT18 (617647), AQP4 (600308), CHST9 (610191), CDH2 (114020)	CytoRegions Not Set				false	arr[hg19] 18q11.2q12.1(21,511,033-28,530,455)x0-1	chr18:21511033-28530455
LST.OSCHP	0.67	Loss	X	p21.2	1269.607	110	11	MAGEB2, MAGEB3, MAGEB4, MAGEB1, NR0B1, CXorf21, GK, TAB3, TAB3-AS1, FTHL17, DMD	9	MAGEB2 (300098), MAGEB3 (300152), MAGEB4 (300153), MAGEB1 (300097), NR0B1 (300473), GK (300474), TAB3 (300480), FTHL17 (300308), DMD (300377)	CytoRegions Not Set				false	arr[hg19] Xp21.2(30,012,185-31,281,792)x0-1	chrX:30012185-31281792
LST.OSCHP	0.67	Loss	X	p11.4	255.108	18	3	TSPAN7, MID1IP1-AS1, MID1IP1	2	TSPAN7 (300096), MID1IP1 (300961)	CytoRegions Not Set				false	arr[hg19] Xp11.4(38,540,835-38,795,943)x0-1	chrX:38540835-38795943
LST.OSCHP	0.67	Loss	X	p22.31	1738.407	119	6	VCX3A, PUDP, STS, MIR4767, VCX, PNPLA4	5	VCX3A (300533), PUDP (306480), STS (300747), VCX (300229), PNPLA4 (300102)	CytoRegions Not Set				false	arr[hg19] Xp22.31(6,303,167-8,041,574)x0-1	chrX:6303167-8041574
LST.OSCHP		LOH	21	q11.2	33753.074	2335	369	ANKRD30BP2, MIR3156-3, LINC01674, POTED, MIR3118-1, LOC110091777, MIR8069-1, MIR8069-2, CYP4F29P, LOC110091776, ANKRD20A11P, LIPI, RBM11, ABCC13, HSPA13, SAMSN1, SAMSN1-AS1, LOC388813, LINC02246, NRIP1, USP25, MIR99AHG, SNORD74B, MIR99A, MIRLET7C, MIR125B2, LINC01549, CXADR, BTG3, BTG3-AS1, C21orf91-OT1, C21orf91, CHODL-AS1, CHODL, TMPRSS15, MIR548XHG, MIR548X, LINC01683, LINC02573, LINC00320, NCAM2, LINC00317, LINC01425, LINC01687, LINC00308, MIR6130, D21S2088E, LINC01689, LINC01684, LINC01692, LINC00158, MIR155HG, MIR155, LINC00515, MRPL39, JAM2, ATP5PF, GABPA, APP, CYYR1-AS1, CYYR1, ADAMTS1, ADAMTS5, MIR4759, LINC00113, LINC00314, LINC01697, LINC01695, LINC00161, N6AMT1, LTN1, RWDD2B, USP16, CCT8, MAP3K7CL, LINC00189, BACH1, BACH1-IT2, BACH1-IT3, GRIK1, GRIK1-AS2, GRIK1-AS1, CLDN17, LINC00307, CLDN8, KRTAP24-1, KRTAP25-1, KRTAP26-1, KRTAP27-1, KRTAP23-1, KRTAP13-2, MIR4327, KRTAP13-1, KRTAP13-3, KRTAP13-4, KRTAP15-1, KRTAP19-1, KRTAP19-2, KRTAP19-3, KRTAP19-4, KRTAP19-5, KRTAP19-6, KRTAP19-7, KRTAP22-2, KRTAP6-3, KRTAP6-2, KRTAP22-1, KRTAP6-1, KRTAP20-1, KRTAP20-4, KRTAP20-2, KRTAP20-3, KRTAP21-3, KRTAP21-2, KRTAP21-1, KRTAP8-1, KRTAP7-1, KRTAP11-1, KRTAP19-8, TIAM1, LOC150051, SOD1, SCAF4, HUNK, LINC00159, MIS18A, MRAP, URB1, SNORA80A, URB1-AS1, EVA1C, C21orf59-TCP10L, TCP10L, CFAP298, SYNJ1, PAXBP1-AS1, PAXBP1, C21orf62-AS1, C21orf62, LINC01690, OLIG2, LINC00945, OLIG1, LOC101928107, LINC01548, IFNAR2, IL10RB-DT, IL10RB, IFNAR1, IFNGR2, TMEM50B, DNAJC28, GART, SON, MIR6501, DONSON, CRYZL1, ITSN1, ATP5PO, LINC00649, LOC101928126, SLC5A3, MRPS6, LINC00310, KCNE2, SMIM11A, SMIM11B, FAM243A, KCNE1, KCNE1B, RCAN1, CLIC6, LINC00160, LINC01426, RUNX1, RUNX1-IT1, LOC100506403, MIR802, PPP1R2P2, LOC101928269, LINC01436, SETD4, LOC100133286, CBR1, LOC105369306, CBR3-AS1, CBR3, DOP1B, MORC3, CHAF1B, CLDN14, SIM2, HLCS, RIPPLY3, LOC105372795, PIGP, TTC3, TTC3-AS1, DSCR9, VPS26C, DYRK1A, KCNJ6, DSCR4, DSCR8, DSCR10, KCNJ15, LINC01423, ERG, LINC00114, ETS2, LOC101928398, LOC400867, LINC01700, PSMG1, BRWD1, BRWD1-AS2, BRWD1-AS1, HMGN1, WRB, WRB-SH3BGR, LCA5L, SH3BGR, MIR6508, B3GALT5-AS1, B3GALT5, IGSF5, PCP4, DSCAM, MIR4760, DSCAM-AS1, DSCAM-IT1, LINC00323, MIR3197, BACE2, PLAC4, FAM3B, MX2, MX1, TMPRSS2, LINC00111, LINC00479, LINC00112, RIPK4, MIR6814, PRDM15, C2CD2, SNORA91, ZBTB21, ZNF295-AS1, UMODL1, UMODL1-AS1, ABCG1, TFF3, TFF2, TFF1, TMPRSS3, UBASH3A, RSPH1, LOC101930094, SLC37A1, LINC01671, PDE9A, LINC01668, WDR4, NDUFV3, ERVH48-1, MIR5692B, PKNOX1, CBS, CBSL, U2AF1, U2AF1L5, FRGCA, LOC106780825, CRYAA, CRYAA2, LINC00322, LINC01679, SIK1B, SIK1, LINC00319, LINC01669, LINC00313, HSF2BP, H2BFS, MIR6070, RRP1B, PDXK, CSTB, RRP1, AATBC, AGPAT3, TRAPPC10, PWP2, GATD3A, GATD3B, LINC01678, ICOSLG, LOC102723996, DNMT3L, LOC105372833, AIRE, PFKL, C21orf2, TRPM2, TRPM2-AS, LRRC3-DT, LRRC3, LINC02575, TSPEAR, TSPEAR-AS1, TSPEAR-AS2, KRTAP10-1, KRTAP10-2, KRTAP10-3, KRTAP10-4, KRTAP10-5, KRTAP10-6, KRTAP10-7, KRTAP10-8, KRTAP10-9, KRTAP10-10, KRTAP10-11, KRTAP12-4, KRTAP12-3, KRTAP12-2, KRTAP12-1, KRTAP10-12, UBE2G2, LINC01424, SUMO3, PTTG1IP, ITGB2, ITGB2-AS1, LINC01547, FAM207A, LINC00163, PICSAR, SSR4P1, ADARB1, LINC00334, POFUT2, LOC642852, LINC00316, COL18A1, COL18A1-AS2, COL18A1-AS1, MIR6815, SLC19A1, LINC01694, PCBP3, LOC100129027, LOC101928796, COL6A1, COL6A2, FTCD, FTCD-AS1, SPATC1L, LSS, SNORD159, MCM3AP-AS1, MCM3AP, YBEY, C21orf58, PCNT, DIP2A, DIP2A-IT1, S100B, PRMT2	165	POTED (607549), LIPI (609252), RBM11 (617937), ABCC13 (608835), HSPA13 (601100), SAMSN1 (607978), NRIP1 (602490), USP25 (604736), MIR99AHG (615964), MIR99A (614509), MIRLET7C (612144), MIR125B2 (610105), CXADR (602621), BTG3 (605674), CHODL (607247), TMPRSS15 (606635), NCAM2 (602040), MIR155 (609337), MRPL39 (611845), JAM2 (606870), ATP5PF (603152), GABPA (600609), APP (104760), CYYR1-AS1 (616021), CYYR1 (616020), ADAMTS1 (605174), ADAMTS5 (605007), N6AMT1 (614553), LTN1 (613083), RWDD2B (617843), USP16 (604735), CCT8 (617786), MAP3K7CL (611110), BACH1 (602751), GRIK1 (138245), CLDN17 (617005), CLDN8 (611231), KRTAP13-1 (608718), KRTAP11-1 (600064), TIAM1 (600687), SOD1 (147450), SCAF4 (616023), HUNK (606532), MRAP (609196), URB1 (608865), TCP10L (608365), CFAP298 (615494), SYNJ1 (604297), PAXBP1 (617621), OLIG2 (606386), OLIG1 (606385), IFNAR2 (602376), IL10RB (123889), IFNAR1 (107450), IFNGR2 (147569), TMEM50B (617894), GART (138440), SON (182465), DONSON (611428), CRYZL1 (603920), ITSN1 (602442), ATP5PO (600828), SLC5A3 (600444), MRPS6 (611973), KCNE2 (603796), KCNE1 (176261), RCAN1 (602917), CLIC6 (615321), RUNX1 (151385), MIR802 (616090), CBR1 (114830), CBR3 (603608), DOP1B (604803), MORC3 (610078), CHAF1B (601245), CLDN14 (605608), SIM2 (600892), HLCS (609018), RIPPLY3 (609892), PIGP (605938), TTC3 (602259), VPS26C (605298), DYRK1A (600855), KCNJ6 (600877), DSCR4 (604829), DSCR8 (613396), KCNJ15 (602106), ERG (165080), LINC00114 (611723), ETS2 (164740), PSMG1 (605296), BRWD1 (617824), HMGN1 (163920), WRB (602915), SH3BGR (602230), B3GALT5 (604066), IGSF5 (610638), PCP4 (601629), DSCAM (602523), BACE2 (605668), PLAC4 (613770), FAM3B (608617), MX2 (147890), MX1 (147150), TMPRSS2 (602060), RIPK4 (605706), PRDM15 (617692), C2CD2 (617581), ZBTB21 (616485), UMODL1 (613859), ABCG1 (603076), TFF3 (600633), TFF2 (182590), TFF1 (113710), TMPRSS3 (605511), UBASH3A (605736), RSPH1 (609314), SLC37A1 (608094), PDE9A (602973), WDR4 (605924), NDUFV3 (602184), PKNOX1 (602100), CBS (613381), U2AF1 (191317), CRYAA (123580), SIK1 (605705), HSF2BP (604554), RRP1B (610654), PDXK (179020), CSTB (601145), RRP1 (610653), AGPAT3 (614794), TRAPPC10 (602103), PWP2 (601475), GATD3A (601659), ICOSLG (605717), DNMT3L (606588), AIRE (607358), PFKL (171860), C21orf2 (603191), TRPM2 (603749), LRRC3 (617620), TSPEAR (612920), UBE2G2 (603124), SUMO3 (602231), PTTG1IP (603784), ITGB2 (600065), LINC00163 (610259), PICSAR (617191), ADARB1 (601218), POFUT2 (610249), COL18A1 (120328), SLC19A1 (600424), PCBP3 (608502), COL6A1 (120220), COL6A2 (120240), FTCD (606806), SPATC1L (612412), LSS (600909), MCM3AP (603294), YBEY (617461), PCNT (605925), DIP2A (607711), S100B (176990), PRMT2 (601961)	CytoRegions Not Set				false	arr[hg19] 21q11.2q22.3(14,344,536-48,097,610) hmz	chr21:14344536-48097610
LST.OSCHP		LOH	11	p14.3	3589.09	242	20	ANO3, LOC105376599, MUC15, SLC5A12, FIBIN, BBOX1, BBOX1-AS1, CCDC34, LGR4, LOC105376671, LIN7C, BDNF-AS, MIR8087, LINC00678, BDNF, KIF18A, MIR610, METTL15, MIR8068, LINC02546	12	ANO3 (610110), MUC15 (608566), SLC5A12 (612455), FIBIN (617085), BBOX1 (603312), CCDC34 (612324), LGR4 (606666), LIN7C (612332), BDNF-AS (611468), BDNF (113505), KIF18A (611271), MIR610 (612330)	CytoRegions Not Set				true	arr[hg19] 11p14.3p14.1(26,034,282-29,623,372) hmz	chr11:26034282-29623372
LST.OSCHP		LOH	18	p11.21	3181.562	195	32	C18orf61, CIDEA, TUBB6, AFG3L2, PRELID3A, LOC105371998, SPIRE1, PSMG2, CEP76, LINC01882, PTPN2, SEH1L, CEP192, LDLRAD4, C18orf15, LDLRAD4-AS1, MIR5190, MIR4526, FAM210A, RNMT, MC5R, MC2R, ZNF519, ANKRD20A5P, CYP4F35P, CXADRP3, POTEC, ANKRD30B, MIR3156-2, LINC01443, LINC01444, LOC644669	15	CIDEA (604440), TUBB6 (615103), AFG3L2 (604581), PRELID3A (616545), SPIRE1 (609216), PSMG2 (609702), PTPN2 (176887), SEH1L (609263), CEP192 (616426), LDLRAD4 (606571), FAM210A (617975), RNMT (603514), MC5R (600042), MC2R (607397), ANKRD30B (616565)	CytoRegions Not Set				true	arr[hg19] 18p11.21(12,195,909-15,377,471) hmz	chr18:12195909-15377471
LST.OSCHP		LOH	22	q13.1	12870.684	1011	244	C22orf23, POLR2F, MIR6820, SOX10, MIR4534, PICK1, SLC16A8, BAIAP2L2, PLA2G6, MAFF, TMEM184B, SNORA92, CSNK1E, TPTEP2-CSNK1E, TPTEP2, KCNJ4, KDELR3, DDX17, DMC1, LOC105373031, FAM227A, CBY1, TOMM22, JOSD1, GTPBP1, SUN2, DNAL4, NPTXR, CBX6, APOBEC3A, APOBEC3A_B, APOBEC3B, APOBEC3B-AS1, APOBEC3C, APOBEC3D, APOBEC3F, APOBEC3G, APOBEC3H, CBX7, PDGFB, RPL3, SNORD83B, SNORD83A, SNORD139, SNORD43, SYNGR1, TAB1, LOC100506472, MGAT3, MGAT3-AS1, MIEF1, ATF4, RPS19BP1, CACNA1I, ENTHD1, GRAP2, FAM83F, LOC100130899, TNRC6B, ADSL, SGSM3, MRTFA, MRTFA-AS1, MCHR1, SLC25A17, MIR4766, ST13, XPNPEP3, DNAJB7, RBX1, SNORD140, MIR1281, EP300, EP300-AS1, L3MBTL2, LOC100506544, CHADL, RANGAP1, MIR6889, ZC3H7B, TEF, TOB2, PHF5A, ACO2, POLR3H, LOC105373044, CSDC2, PMM1, DESI1, XRCC6, SNU13, C22orf46, MEI1, CCDC134, SREBF2, MIR33A, SHISA8, MIR378I, TNFRSF13C, CENPM, LINC00634, SEPT3, WBP2NL, NAGA, PHETA2, SMDT1, NDUFA6, NDUFA6-DT, CYP2D6, LOC101929829, CYP2D7, TCF20, OGFRP1, LINC01315, NFAM1, SERHL, RRP7A, SERHL2, RRP7BP, POLDIP3, RNU12, CYB5R3, ATP5MGL, A4GALT, ARFGAP3, PACSIN2, LOC100506679, TTLL1, BIK, MCAT, TSPO, TTLL12, FLJ30901, SCUBE1, LOC105373051, LOC101927447, LINC01639, MPPED1, EFCAB6-AS1, EFCAB6, SULT4A1, PNPLA5, PNPLA3, SAMM50, PARVB, PARVG, SHISAL1, LINC01656, RTL6, LINC00207, LINC00229, PRR5, PRR5-ARHGAP8, ARHGAP8, PHF21B, LOC101927551, NUP50-DT, NUP50, LOC105373064, KIAA0930, MIR1249, UPK3A, FAM118A, SMC1B, RIBC2, FBLN1, LINC01589, ATXN10, MIR4762, WNT7B, LOC730668, LINC00899, PRR34, PRR34-AS1, LOC642648, MIRLET7BHG, MIR3619, MIRLET7A3, MIR4763, MIRLET7B, PPARA, CDPF1, PKDREJ, TTC38, GTSE1-DT, GTSE1, TRMU, CELSR1, GRAMD4, CERK, TBC1D22A, TBC1D22A-AS1, LOC339685, LINC01644, LINC00898, LOC284930, MIR3201, FAM19A5, LOC284933, MIR4535, LINC01310, C22orf34, MIR3667, BRD1, ZBED4, ALG12, CRELD2, PIM3, MIR6821, IL17REL, TTLL8, MLC1, MOV10L1, PANX2, TRABD, SELENOO, TUBGCP6, HDAC10, MAPK12, MAPK11, PLXNB2, DENND6B, PPP6R2, SBF1, ADM2, MIOX, LMF2, NCAPH2, SCO2, TYMP, ODF3B, KLHDC7B, SYCE3, CPT1B, CHKB-CPT1B, CHKB, CHKB-DT, MAPK8IP2, ARSA, SHANK3, LOC105373100, ACR, RPL23AP82, RABL2B	147	POLR2F (604414), SOX10 (602229), PICK1 (605926), SLC16A8 (610409), BAIAP2L2 (617536), PLA2G6 (603604), MAFF (604877), CSNK1E (600863), KCNJ4 (600504), DDX17 (608469), DMC1 (602721), CBY1 (607757), TOMM22 (607046), JOSD1 (615323), GTPBP1 (602245), SUN2 (613569), DNAL4 (610565), NPTXR (609474), CBX6 (617438), APOBEC3A (607109), APOBEC3B (607110), APOBEC3C (607750), APOBEC3D (609900), APOBEC3F (608993), APOBEC3G (607113), APOBEC3H (610976), CBX7 (608457), PDGFB (190040), RPL3 (604163), SNORD83B (611071), SNORD83A (611070), SNORD139 (611069), SNORD43 (611068), SYNGR1 (603925), TAB1 (602615), MGAT3 (604621), MIEF1 (615497), ATF4 (604064), RPS19BP1 (610225), CACNA1I (608230), GRAP2 (604518), TNRC6B (610740), ADSL (608222), SGSM3 (610440), MRTFA (606078), MCHR1 (601751), SLC25A17 (606795), ST13 (606796), XPNPEP3 (613553), DNAJB7 (611336), RBX1 (603814), EP300 (602700), L3MBTL2 (611865), CHADL (616236), RANGAP1 (602362), TEF (188595), TOB2 (607396), PHF5A (617846), ACO2 (100850), CSDC2 (617689), PMM1 (601786), DESI1 (614637), XRCC6 (152690), SNU13 (601304), MEI1 (608797), SREBF2 (600481), MIR33A (612156), SHISA8 (617329), TNFRSF13C (606269), CENPM (610152), SEPT3 (608314), WBP2NL (610981), NAGA (104170), PHETA2 (614240), SMDT1 (615588), NDUFA6 (602138), CYP2D6 (124030), TCF20 (603107), NFAM1 (608740), SERHL (607979), POLDIP3 (611520), CYB5R3 (613213), A4GALT (607922), ARFGAP3 (612439), PACSIN2 (604960), TTLL1 (608955), BIK (603392), MCAT (614479), TSPO (109610), SCUBE1 (611746), MPPED1 (602112), SULT4A1 (608359), PNPLA5 (611589), PNPLA3 (609567), SAMM50 (612058), PARVB (608121), PARVG (608122), PRR5 (609406), ARHGAP8 (609405), PHF21B (616727), NUP50 (604646), UPK3A (611559), SMC1B (608685), FBLN1 (135820), ATXN10 (611150), WNT7B (601967), MIRLET7A3 (612143), MIRLET7B (611249), PPARA (170998), PKDREJ (604670), GTSE1 (607477), TRMU (610230), CELSR1 (604523), GRAMD4 (613691), CERK (610307), TBC1D22A (616879), FAM19A5 (617499), BRD1 (604589), ZBED4 (612552), ALG12 (607144), CRELD2 (607171), PIM3 (610580), IL17REL (613414), MLC1 (605908), MOV10L1 (605794), PANX2 (608421), SELENOO (607917), TUBGCP6 (610053), HDAC10 (608544), MAPK12 (602399), MAPK11 (602898), PLXNB2 (604293), PPP6R2 (610877), SBF1 (603560), ADM2 (608682), MIOX (606774), NCAPH2 (611230), SCO2 (604272), TYMP (131222), SYCE3 (615775), CPT1B (601987), CHKB (612395), MAPK8IP2 (607755), ARSA (607574), SHANK3 (606230), ACR (102480), RABL2B (605413)	CytoRegions Not Set				false	arr[hg19] 22q13.1q13.33(38,343,142-51,213,826) hmz	chr22:38343142-51213826
LST.OSCHP		LOH	9	p24.3	13393.676	1180	55	C9orf66, DOCK8, KANK1, DMRT1, DMRT3, LINC01230, DMRT2, SMARCA2, VLDLR-AS1, VLDLR, KCNV2, PUM3, LINC01231, RFX3, RFX3-AS1, GLIS3, GLIS3-AS1, SLC1A1, SPATA6L, PLPP6, CDC37L1-DT, CDC37L1, AK3, RCL1, MIR101-2, JAK2, INSL6, INSL4, RLN2, RLN1, PLGRKT, CD274, PDCD1LG2, RIC1, ERMP1, MLANA, KIAA2026, MIR4665, RANBP6, IL33, TPD52L3, UHRF2, GLDC, KDM4C, DMAC1, PTPRD, PTPRD-AS1, LOC105375972, PTPRD-AS2, TYRP1, LURAP1L-AS1, LURAP1L, SNORD137, MPDZ, LINC01235	37	DOCK8 (611432), KANK1 (607704), DMRT1 (602424), DMRT3 (614754), DMRT2 (604935), SMARCA2 (600014), VLDLR (192977), KCNV2 (607604), PUM3 (609960), RFX3 (601337), GLIS3 (610192), SLC1A1 (133550), PLPP6 (611666), CDC37L1 (610346), AK3 (609290), RCL1 (611405), MIR101-2 (612512), JAK2 (147796), INSL6 (606414), INSL4 (600910), RLN2 (179740), RLN1 (179730), CD274 (605402), PDCD1LG2 (605723), RIC1 (610354), ERMP1 (611156), MLANA (605513), IL33 (608678), TPD52L3 (617567), UHRF2 (615211), GLDC (238300), KDM4C (605469), DMAC1 (617261), PTPRD (601598), TYRP1 (115501), LURAP1L (616130), MPDZ (603785)	CytoRegions Not Set				false	arr[hg19] 9p24.3p23(204,737-13,598,413) hmz	chr9:204737-13598413
LST.OSCHP		LOH	17	q12	16175.065	1562	495	CCT6B, ZNF830, LIG3, RFFL, RAD51L3-RFFL, RAD51D, FNDC8, NLE1, UNC45B, SLC35G3, SLFN5, SLFN11, SLFN12, SLFN13, SLFN12L, SLFN14, LOC107985033, LINC02001, SNORD7, PEX12, AP2B1, RASL10B, GAS2L2, MMP28, C17orf50, TAF15, HEATR9, CCL5, LRRC37A8P, RDM1, LYZL6, CCL16, CCL14, CCL15-CCL14, CCL15, CCL23, CCL18, CCL3, CCL4, CCL3L3, CCL3L1, CCL4L1, CCL4L2, TBC1D3H, TBC1D3G, TBC1D3F, TBC1D3B, ZNHIT3, MYO19, PIGW, GGNBP2, DHRS11, MRM1, LHX1-DT, LHX1, AATF, MIR2909, ACACA, SNORA90, C17orf78, TADA2A, DUSP14, SYNRG, DDX52, MIR378J, HNF1B, YWHAEP7, TBC1D3C, TBC1D3L, TBC1D3, TBC1D3K, TBC1D3D, TBC1D3I, TBC1D3E, TBC1D3J, LOC440434, MRPL45, GPR179, SOCS7, ARHGAP23, SRCIN1, EPOP, MIR4734, MLLT6, MIR4726, CISD3, PCGF2, LOC100287808, PSMB3, PIP4K2B, CWC25, MIR4727, C17orf98, RPL23, SNORA21B, SNORA21, LASP1, MIR6779, LINC00672, FBXO47, LINC02079, LRRC37A11P, RDM1P5, PLXDC1, ARL5C, CACNB1, RPL19, STAC2, FBXL20, MED1, CDK12, NEUROD2, PPP1R1B, STARD3, TCAP, PNMT, PGAP3, ERBB2, MIR4728, MIEN1, GRB7, IKZF3, ZPBP2, GSDMB, ORMDL3, LRRC3C, GSDMA, PSMD3, CSF3, MED24, MIR6884, SNORD124, THRA, NR1D1, MSL1, CASC3, MIR6866, RAPGEFL1, MIR6867, WIPF2, CDC6, RARA, RARA-AS1, GJD3, TOP2A, IGFBP4, TNS4, CCR7, SMARCE1, KRT222, KRT24, KRT25, KRT26, KRT27, KRT28, KRT10, TMEM99, KRT12, KRT20, KRT23, KRT39, KRT40, KRTAP3-3, KRTAP3-2, KRTAP3-1, KRTAP1-5, KRTAP1-4, KRTAP1-3, KRTAP1-1, KRTAP2-1, KRTAP2-2, KRTAP2-3, KRTAP2-4, KRTAP4-7, KRTAP4-8, KRTAP4-9, KRTAP4-11, KRTAP4-12, KRTAP4-6, KRTAP4-5, KRTAP4-4, KRTAP4-3, KRTAP4-2, KRTAP4-1, KRTAP9-1, KRTAP9-2, KRTAP9-3, KRTAP9-9, KRTAP9-8, KRTAP9-4, KRTAP9-6, KRTAP9-7, KRTAP29-1, KRTAP16-1, KRTAP17-1, KRT33A, KRT33B, KRT34, KRT31, LOC100505782, KRT37, KRT38, KRT32, KRT35, KRT36, KRT13, KRT15, MIR6510, KRT19, LINC00974, KRT9, KRT14, KRT16, KRT17, KRT42P, EIF1, GAST, HAP1, JUP, P3H4, FKBP10, NT5C3B, KLHL10, KLHL11, ACLY, TTC25, CNP, DNAJC7, NKIRAS2, ZNF385C, C17orf113, DHX58, KAT2A, HSPB9, RAB5C, KCNH4, HCRT, GHDC, STAT5B, STAT5A, STAT3, CAVIN1, ATP6V0A1, MIR548AT, MIR5010, NAGLU, LOC108783654, HSD17B1, COASY, MLX, PSMC3IP, RETREG3, TUBG1, TUBG2, PLEKHH3, CCR10, CNTNAP1, EZH1, MIR6780A, RAMP2-AS1, RAMP2, VPS25, WNK4, COA3, CNTD1, BECN1, MIR6781, PSME3, AOC2, AOC3, AOC4P, LINC00671, G6PC, AARSD1, PTGES3L-AARSD1, PTGES3L, RUNDC1, RPL27, IFI35, VAT1, RND2, BRCA1, NBR2, LOC101929767, NBR1, TMEM106A, CCDC200, LINC00910, ARL4D, MIR2117HG, MIR2117, DHX8, ETV4, MEOX1, SOST, DUSP3, CFAP97D1, MPP3, CD300LG, MPP2, FAM215A, LINC01976, PPY, PYY, NAGS, TMEM101, LSM12, G6PC3, HDAC5, LOC105371789, C17orf53, ASB16, ASB16-AS1, TMUB2, ATXN7L3, UBTF, MIR6782, SLC4A1, RUNDC3A-AS1, RUNDC3A, SLC25A39, GRN, FAM171A2, ITGA2B, GPATCH8, FZD2, LINC01180, MEIOC, CCDC43, DBF4B, ADAM11, GJC1, HIGD1B, EFTUD2, CCDC103, FAM187A, GFAP, KIF18B, MIR6783, C1QL1, DCAKD, NMT1, PLCD3, MIR6784, ACBD4, HEXIM1, HEXIM2, LOC105371795, LOC339192, FMNL1, MAP3K14-AS1, SPATA32, MAP3K14, ARHGAP27, PLEKHM1, MIR4315-2, MIR4315-1, ARL17B, LRRC37A4P, MAPK8IP1P2, LINC02210, LINC02210-CRHR1, CRHR1, MAPT-AS1, SPPL2C, MAPT, MAPT-IT1, STH, KANSL1, KANSL1-AS1, LRRC37A, ARL17A, NSFP1, LRRC37A2, NSF, WNT3, WNT9B, GOSR2, MIR5089, RPRML, CDC27, MYL4, ITGB3, THCAT158, EFCAB13, MRPL45P2, NPEPPS, KPNB1, TBKBP1, TBX21, OSBPL7, MRPL10, LRRC46, SCRN2, SP6, LOC102724532, SP2, SP2-AS1, PNPO, PRR15L, CDK5RAP3, COPZ2, MIR152, NFE2L1, CBX1, SNX11, SKAP1, MIR1203, THRA1/BTR, LOC101927166, HOXB1, HOXB2, HOXB-AS1, HOXB3, HOXB4, MIR10A, HOXB-AS3, HOXB5, HOXB6, HOXB7, HOXB8, HOXB9, MIR196A1, PRAC1, PRAC2, MIR3185, HOXB13, TTLL6, CALCOCO2, LOC105371814, ATP5MC1, UBE2Z, SNF8, GIP, IGF2BP1, B4GALNT2, GNGT2, ABI3, PHOSPHO1, FLJ40194, MIR6129, ZNF652, LOC102724596, PHB, LINC02075, NGFR, LOC100288866, MIR6165, NXPH3, SPOP, SLC35B1, FAM117A, KAT7, TAC4, FLJ45513, DLX4, DLX3, PICART1, ITGA3, PDK2, SAMD14, PPP1R9B, SGCA, HILS1, COL1A1, LINC01969, TMEM92, TMEM92-AS1, XYLT2, MRPL27, EME1, LRRC59, ACSF2, CHAD, RSAD1, MYCBPAP, EPN3, LOC105371824, SPATA20, CACNA1G-AS1, CACNA1G, ABCC3, ANKRD40, LUC7L3, ANKRD40CL, MIR8059, WFIKKN2, TOB1, TOB1-AS1, SPAG9, NME1-NME2, NME1, NME2, MBTD1, UTP18	314	CCT6B (610730), LIG3 (600940), RFFL (609735), RAD51D (602954), UNC45B (611220), SLFN5 (614952), SLFN11 (614953), SLFN12 (614955), SLFN13 (614957), SLFN12L (614956), SLFN14 (614958), PEX12 (601758), AP2B1 (601025), RASL10B (612128), GAS2L2 (611398), MMP28 (608417), TAF15 (601574), CCL5 (187011), RDM1 (612896), LYZL6 (612751), CCL16 (601394), CCL14 (601392), CCL15 (601393), CCL23 (602494), CCL18 (603757), CCL3 (182283), CCL4 (182284), CCL3L3 (609468), CCL4L1 (603782), CCL4L2 (610757), CCL3L1 (601395), TBC1D3F (610809), TBC1D3B (610144), ZNHIT3 (604500), MYO19 (617379), PIGW (610275), GGNBP2 (612275), DHRS11 (616159), LHX1 (601999), AATF (608463), ACACA (200350), TADA2A (602276), DUSP14 (606618), SYNRG (607291), DDX52 (612500), HNF1B (189907), TBC1D3C (610806), TBC1D3H (610811), TBC1D3 (607741), TBC1D3G (610810), TBC1D3D (610807), TBC1D3E (610808), MRPL45 (611850), GPR179 (614515), SOCS7 (608788), ARHGAP23 (610590), SRCIN1 (610786), EPOP (617795), MLLT6 (600328), CISD3 (611933), PCGF2 (600346), PSMB3 (602176), PIP4K2B (603261), RPL23 (603662), LASP1 (602920), LINC00672 (617544), FBXO47 (609498), PLXDC1 (606826), CACNB1 (114207), RPL19 (180466), FBXL20 (609086), MED1 (604311), CDK12 (615514), NEUROD2 (601725), PPP1R1B (604399), STARD3 (607048), TCAP (604488), PNMT (171190), PGAP3 (611801), ERBB2 (164870), MIEN1 (611802), GRB7 (601522), IKZF3 (606221), ZPBP2 (608499), GSDMB (611221), ORMDL3 (610075), GSDMA (611218), PSMD3 (617676), CSF3 (138970), MED24 (607000), THRA (190120), NR1D1 (602408), MSL1 (614801), CASC3 (606504), WIPF2 (609692), CDC6 (602627), RARA (180240), GJD3 (607425), TOP2A (126430), IGFBP4 (146733), TNS4 (608385), CCR7 (600242), SMARCE1 (603111), KRT24 (607742), KRT25 (616646), KRT26 (616675), KRT27 (616676), KRT28 (616677), KRT10 (148080), KRT12 (601687), KRT20 (608218), KRT23 (606194), KRT39 (616678), KRT40 (616679), KRTAP1-5 (608822), KRTAP1-4 (608821), KRTAP1-3 (608820), KRTAP1-1 (608819), KRT33A (602761), KRT33B (602762), KRT34 (602763), KRT31 (601077), KRT37 (604541), KRT38 (604542), KRT32 (602760), KRT35 (602764), KRT36 (604540), KRT13 (148065), KRT15 (148030), KRT19 (148020), KRT9 (607606), KRT14 (148066), KRT16 (148067), KRT17 (148069), GAST (137250), HAP1 (600947), JUP (173325), P3H4 (617419), FKBP10 (607063), KLHL10 (608778), ACLY (108728), TTC25 (617095), CNP (123830), DNAJC7 (601964), NKIRAS2 (604497), DHX58 (608588), KAT2A (602301), HSPB9 (608344), RAB5C (604037), KCNH4 (604528), HCRT (602358), GHDC (608587), STAT5B (604260), STAT5A (601511), STAT3 (102582), CAVIN1 (603198), ATP6V0A1 (192130), NAGLU (609701), HSD17B1 (109684), COASY (609855), MLX (602976), PSMC3IP (608665), RETREG3 (616498), TUBG1 (191135), TUBG2 (605785), CCR10 (600240), CNTNAP1 (602346), EZH1 (601674), RAMP2 (605154), VPS25 (610907), WNK4 (601844), COA3 (614775), BECN1 (604378), PSME3 (605129), AOC2 (602268), AOC3 (603735), G6PC (613742), AARSD1 (613212), RPL27 (607526), IFI35 (600735), VAT1 (604631), RND2 (601555), BRCA1 (113705), NBR1 (166945), ARL4D (600732), DHX8 (600396), ETV4 (600711), MEOX1 (600147), SOST (605740), DUSP3 (600183), MPP3 (601114), CD300LG (610520), MPP2 (600723), PPY (167780), PYY (600781), NAGS (608300), LSM12 (611793), G6PC3 (611045), HDAC5 (605315), ASB16 (615056), UBTF (600673), SLC4A1 (109270), RUNDC3A (605448), SLC25A39 (610820), GRN (138945), ITGA2B (607759), GPATCH8 (614396), FZD2 (600667), MEIOC (616934), DBF4B (611661), ADAM11 (155120), GJC1 (608655), EFTUD2 (603892), CCDC103 (614677), GFAP (137780), KIF18B (614570), C1QL1 (611586), NMT1 (160993), PLCD3 (608795), HEXIM1 (607328), HEXIM2 (615695), FMNL1 (604656), MAP3K14 (604655), ARHGAP27 (610591), PLEKHM1 (611466), CRHR1 (122561), SPPL2C (608284), MAPT (157140), STH (607067), KANSL1 (612452), LRRC37A (616555), LRRC37A2 (616556), NSF (601633), WNT3 (165330), WNT9B (602864), GOSR2 (604027), CDC27 (116946), MYL4 (160770), ITGB3 (173470), NPEPPS (606793), KPNB1 (602738), TBKBP1 (608476), TBX21 (604895), OSBPL7 (606735), MRPL10 (611825), SCRN2 (614966), SP6 (608613), SP2 (601801), PNPO (603287), CDK5RAP3 (608202), COPZ2 (615526), MIR152 (613788), NFE2L1 (163260), CBX1 (604511), SNX11 (614906), SKAP1 (604969), HOXB1 (142968), HOXB2 (142967), HOXB3 (142966), HOXB4 (142965), MIR10A (610173), HOXB5 (142960), HOXB6 (142961), HOXB7 (142962), HOXB8 (142963), HOXB9 (142964), MIR196A1 (608632), PRAC1 (609819), PRAC2 (610787), HOXB13 (604607), TTLL6 (610849), CALCOCO2 (604587), ATP5MC1 (603192), UBE2Z (611362), SNF8 (610904), GIP (137240), IGF2BP1 (608288), B4GALNT2 (111730), GNGT2 (139391), ABI3 (606363), ZNF652 (613907), PHB (176705), NGFR (162010), NXPH3 (604636), SPOP (602650), SLC35B1 (610790), KAT7 (609880), TAC4 (607833), DLX4 (601911), DLX3 (600525), ITGA3 (605025), PDK2 (602525), PPP1R9B (603325), SGCA (600119), HILS1 (608101), COL1A1 (120150), XYLT2 (608125), MRPL27 (611837), EME1 (610885), LRRC59 (614854), ACSF2 (610465), CHAD (602178), MYCBPAP (609835), EPN3 (607264), SPATA20 (613939), CACNA1G (604065), ABCC3 (604323), LUC7L3 (609434), WFIKKN2 (610895), TOB1 (605523), SPAG9 (605430), NME1 (156490), NME2 (156491), UTP18 (612816)	CytoRegions Not Set			CLEMENTS:Sophie	true	arr[hg19] 17q12q21.33(33,176,093-49,351,158) hmz	chr17:33176093-49351158
LST.OSCHP		LOH	12	q22	10530.793	785	90	CRADD, LOC105369911, PLXNC1, CEP83, CEP83-DT, MIR5700, TMCC3, MIR7844, MIR492, KRT19P2, NDUFA12, NR2C1, FGD6, VEZT, MIR331, MIR3685, METAP2, USP44, PGAM1P5, NTN4, LOC105369921, LINC02410, SNRPF, CCDC38, AMDHD1, HAL, LTA4H, ELK3, CDK17, CFAP54, NEDD1, RMST, MIR1251, MIR135A2, LOC643711, MIR4495, MIR4303, SLC9A7P1, LINC02453, TMPO-AS1, TMPO, SLC25A3, SNORA53, IKBIP, APAF1, ANKS1B, LOC101928937, FAM71C, UHRF1BP1L, GOLGA2P5, MIR1827, ACTR6, DEPDC4, SCYL2, SLC17A8, NR1H4, GAS2L3, ANO4, SLC5A8, UTP20, ARL1, SPIC, MYBPC1, CHPT1, SYCP3, GNPTAB, DRAM1, WASHC3, NUP37, PARPBP, PMCH, IGF1, LINC00485, PAH, ASCL1, LOC101929058, C12orf42, LOC105369945, LINC02401, STAB2, NT5DC3, TTC41P, HSP90B1, MIR3652, C12orf73, TDG, GLT8D2, HCFC2, NFYB, TXNRD1	50	CRADD (603454), PLXNC1 (604259), CEP83 (615847), TMCC3 (617459), MIR492 (614384), NDUFA12 (614530), NR2C1 (601529), FGD6 (613520), METAP2 (601870), USP44 (610993), NTN4 (610401), SNRPF (603541), HAL (609457), LTA4H (151570), ELK3 (600247), CDK17 (603440), NEDD1 (600372), RMST (607045), TMPO (188380), SLC25A3 (600370), IKBIP (609861), APAF1 (602233), ANKS1B (607815), SCYL2 (616365), SLC17A8 (607557), NR1H4 (603826), GAS2L3 (617224), ANO4 (610111), SLC5A8 (608044), UTP20 (612822), ARL1 (603425), SPIC (612568), MYBPC1 (160794), CHPT1 (616747), SYCP3 (604759), GNPTAB (607840), DRAM1 (610776), NUP37 (609264), PARPBP (613687), PMCH (176795), IGF1 (147440), PAH (612349), ASCL1 (100790), STAB2 (608561), NT5DC3 (611076), HSP90B1 (191175), TDG (601423), HCFC2 (607926), NFYB (189904), TXNRD1 (601112)	CytoRegions Not Set				false	arr[hg19] 12q22q23.3(94,158,666-104,689,459) hmz	chr12:94158666-104689459
LST.OSCHP		LOH	11	q13.4	61280.179	4747	550	DNAJB13, UCP2, UCP3, C2CD3, PPME1, P4HA3, P4HA3-AS1, PGM2L1, MIR548AL, KCNE3, LIPT2, LOC100287896, POLD3, CHRDL2, MIR4696, RNF169, XRRA1, SPCS2, NEU3, OR2AT4, SLCO2B1, TPBGL, ARRB1, MIR326, RPS3, SNORD15A, SNORD15B, KLHL35, GDPD5, SERPINH1, LOC105369391, MAP6, MOGAT2, LOC283214, DGAT2, LOC100506113, UVRAG, WNT11, THAP12, GVQW3, EMSY, LRRC32, GUCY2EP, TSKU, LOC101928837, ACER3, B3GNT6, CAPN5, OMP, MYO7A, GDPD4, PAK1, LOC646029, AQP11, CLNS1A, RSF1, AAMDC, INTS4, KCTD14, NDUFC2-KCTD14, THRSP, NDUFC2, ALG8, KCTD21-AS1, KCTD21, USP35, GAB2, LOC101928865, NARS2, LOC101928896, TENM4, MIR708, MIR5579, LOC101928944, MIR4300HG, MIR4300, FAM181B, PRCP, DDIAS, RAB30, SNORA70E, RAB30-AS1, PCF11, LOC100506282, PCF11-AS1, ANKRD42, CCDC90B, DLG2, TMEM126B, TMEM126A, CREBZF, CCDC89, SYTL2, CCDC83, PICALM, EED, MIR6755, HIKESHI, CCDC81, ME3, PRSS23, OR7E2P, FZD4, LOC100506368, TMEM135, LOC105369423, RAB38, MIR3166, CTSC, GRM5-AS1, GRM5, TYR, NOX4, FOLH1B, TRIM77, TRIM49, TRIM53AP, TRIM51EP, TRIM64B, TRIM49D2, TRIM49D1, TRIM64, TRIM49C, UBTFL1, NAALAD2, CHORDC1, DISC1FP1, MIR4490, MIR1261, FAT3, LOC105369431, MTNR1B, SLC36A4, DEUP1, SMCO4, CEP295, SCARNA9, TAF1D, SNORA25, SNORA32, SNORD6, SNORA1, SNORA8, SNORD5, SNORA18, MIR1304, SNORA40, C11orf54, MED17, VSTM5, HEPHL1, PANX1, IZUMO1R, GPR83, MRE11, MIR548L, ANKRD49, C11orf97, FUT4, LOC105369438, PIWIL4, AMOTL1, CWC15, KDM4D, KDM4E, SRSF8, ENDOD1, LOC101929295, SESN3, LOC100129203, FAM76B, CEP57, MTMR2, MAML2, MIR1260B, CCDC82, JRKL, JRKL-AS1, LOC105369443, CNTN5, LOC100128386, ARHGAP42, SNORD13I, PGR, PGR-AS1, TRPC6, MIR3920, ANGPTL5, CEP126, CFAP300, YAP1, BIRC3, BIRC2, TMEM123, LOC101928424, LOC102723838, MMP7, MMP20, MMP27, MMP8, MMP10, WTAPP1, MMP1, MMP3, MMP12, MMP13, DCUN1D5, DYNC2H1, MIR4693, PDGFD, DDI1, LINC02552, CASP12, LOC643733, CASP4, CASP5, CASP1, CARD16, CASP1P2, CARD17, CARD18, GRIA4, MSANTD4, KBTBD3, AASDHPPT, LOC105369473, LOC101928535, GUCY1A2, CWF19L2, ALKBH8, ELMOD1, SLN, SLC35F2, RAB39A, CUL5, ACAT1, NPAT, ATM, C11orf65, KDELC2, EXPH5, DDX10, C11orf87, ZC3H12C, RDX, LOC105369486, FDX1, ARHGAP20, LINC02550, C11orf53, COLCA1, COLCA2, MIR4491, POU2AF1, LOC100132078, BTG4, LOC728196, MIR34B, MIR34C, C11orf88, LAYN, SIK2, PPP2R1B, ALG9, FDXACB1, C11orf1, CRYAB, HSPB2, HSPB2-C11orf52, C11orf52, DIXDC1, DLAT, PIH1D2, NKAPD1, TIMM8B, SDHD, IL18, TEX12, BCO2, PTS, PLET1, LOC100132686, LOC283140, LOC101928823, LOC387810, LOC101928847, NCAM1, NCAM1-AS1, TTC12, ANKK1, DRD2, MIR4301, TMPRSS5, ZW10, CLDN25, USP28, HTR3B, HTR3A, ZBTB16, NNMT, LOC101928940, C11orf71, RBM7, REXO2, NXPE1, NXPE4, NXPE2, CADM1, LOC105369509, LOC105369507, LOC101928985, LINC00900, LOC101929011, BUD13, ZPR1, APOA5, APOA4, APOC3, APOA1, APOA1-AS, SIK3, PAFAH1B2, SIDT2, LOC100652768, TAGLN, PCSK7, RNF214, BACE1, BACE1-AS, CEP164, DSCAML1, FXYD2, FXYD6-FXYD2, FXYD6, TMPRSS13, IL10RA, SMIM35, TMPRSS4, SCN4B, SCN2B, JAML, MPZL3, MPZL2, CD3E, CD3D, CD3G, UBE4A, LOC100131626, ATP5MG, KMT2A, LOC101929089, TTC36, TMEM25, IFT46, ARCN1, PHLDB1, MIR6716, TREH, DDX6, CXCR5, BCL9L, MIR4492, UPK2, FOXR1, CCDC84, RPL23AP64, RPS25, TRAPPC4, SLC37A4, HYOU1, VPS11, HMBS, H2AFX, DPAGT1, C2CD2L, HINFP, ABCG4, NLRX1, PDZD3, CCDC153, SNORD150, CBL, MCAM, MIR6756, RNF26, C1QTNF5, MFRP, USP2, USP2-AS1, THY1, NECTIN1, LOC102724301, TRIM29, OAF, POU2F3, LOC649133, TMEM136, ARHGEF12, GRIK4, LOC105369532, LOC101929227, LOC101929208, TBCEL, TECTA, SC5D, SORL1, MIR100HG, MIR125B1, BLID, MIRLET7A2, MIR100, UBASH3B, CRTAM, JHY, BSX, LOC341056, HSPA8, CLMP, MIR4493, LOC100128242, GRAMD1B, SCN3B, ZNF202, OR6X1, OR6M1, TMEM225, OR8D4, OR4D5, OR6T1, OR10S1, OR10G6, OR10G4, OR10G9, OR10G8, OR10G7, VWA5A, OR10D3, OR8G2P, OR8G1, OR8G5, OR8D1, OR8D2, OR8B2, OR8B3, OR8B4, OR8B8, OR8B12, OR8A1, PANX3, TBRG1, SIAE, SPA17, NRGN, VSIG2, ESAM, LOC101929340, MSANTD2, LOC100507283, ROBO3, ROBO4, HEPN1, HEPACAM, CCDC15, SLC37A2, TMEM218, PKNOX2-AS1, PKNOX2, FEZ1, LOC403312, EI24, STT3A-AS1, STT3A, CHEK1, ACRV1, PATE1, PATE2, PATE3, PATE4, HYLS1, PUS3, DDX25, CDON, RPUSD4, FAM118B, SRPRA, FOXRED1, TIRAP, DCPS, GSEC, ST3GAL4, KIRREL3, LOC101929427, KIRREL3-AS2, MIR3167, KIRREL3-AS3, LOC101929473, LOC101929497, LINC02098, ETS1, MIR6090, LOC101929517, LOC101929538, FLI1, SENCR, KCNJ1, KCNJ5, C11orf45, TP53AIP1, ARHGAP32, LOC399975, BARX2, LINC01395, TMEM45B, NFRKB, PRDM10, LINC00167, APLP2, ST14, ZBTB44, LOC646383, ADAMTS8, ADAMTS15, MIR8052, C11orf44, LINC02551, LOC103611081, SNX19, NTM, LOC101929653, NTM-AS1, NTM-IT, OPCML, LOC646522, SPATA19, MIR4697HG, MIR4697, IGSF9B, LOC100128239, JAM3, SNORD153, NCAPD3, VPS26B, THYN1, ACAD8, GLB1L3, GLB1L2, B3GAT1, LOC283177, LOC729305, LOC100507548	307	DNAJB13 (610263), UCP2 (601693), UCP3 (602044), C2CD3 (615944), PPME1 (611117), P4HA3 (608987), PGM2L1 (611610), KCNE3 (604433), LIPT2 (617659), POLD3 (611415), CHRDL2 (613127), XRRA1 (609788), NEU3 (604617), SLCO2B1 (604988), ARRB1 (107940), MIR326 (613755), RPS3 (600454), SNORD15A (600455), GDPD5 (609632), SERPINH1 (600943), MAP6 (601783), MOGAT2 (610270), DGAT2 (606983), UVRAG (602493), WNT11 (603699), THAP12 (607374), EMSY (608574), LRRC32 (137207), TSKU (608015), ACER3 (617036), B3GNT6 (615315), CAPN5 (602537), OMP (164340), MYO7A (276903), PAK1 (602590), AQP11 (609914), CLNS1A (602158), RSF1 (608522), INTS4 (611348), THRSP (601926), NDUFC2 (603845), ALG8 (608103), GAB2 (606203), NARS2 (612803), TENM4 (610084), PRCP (176785), RAB30 (605693), PCF11 (608876), DLG2 (603583), TMEM126B (615533), TMEM126A (612988), CREBZF (606444), SYTL2 (612880), PICALM (603025), EED (605984), HIKESHI (614908), ME3 (604626), FZD4 (604579), TMEM135 (616360), RAB38 (606281), CTSC (602365), GRM5 (604102), TYR (606933), NOX4 (605261), FOLH1B (609020), TRIM49 (606124), UBTFL1 (613696), NAALAD2 (611636), CHORDC1 (604353), FAT3 (612483), MTNR1B (600804), SLC36A4 (613760), DEUP1 (617148), SMCO4 (609477), CEP295 (617728), TAF1D (612823), C11orf54 (615810), MED17 (603810), PANX1 (608420), IZUMO1R (615737), GPR83 (605569), MRE11 (600814), FUT4 (104230), PIWIL4 (610315), AMOTL1 (614657), KDM4D (609766), KDM4E (616581), SRSF8 (603269), SESN3 (607768), CEP57 (607951), MTMR2 (603557), MAML2 (607537), MIR1260B (615372), JRKL (603211), CNTN5 (607219), ARHGAP42 (615936), PGR (607311), TRPC6 (603652), ANGPTL5 (607666), CEP126 (614634), YAP1 (606608), BIRC3 (601721), BIRC2 (601712), TMEM123 (606356), MMP7 (178990), MMP20 (604629), MMP8 (120355), MMP10 (185260), MMP1 (120353), MMP3 (185250), MMP12 (601046), MMP13 (600108), DCUN1D5 (616522), DYNC2H1 (603297), PDGFD (609673), CASP12 (608633), CASP4 (602664), CASP5 (602665), CASP1 (147678), CARD16 (615680), CARD17 (609490), CARD18 (605354), GRIA4 (138246), AASDHPPT (607756), GUCY1A2 (601244), ALKBH8 (613306), ELMOD1 (615456), SLN (602203), CUL5 (601741), ACAT1 (607809), NPAT (601448), ATM (607585), EXPH5 (612878), DDX10 (601235), ZC3H12C (615001), RDX (179410), FDX1 (103260), ARHGAP20 (609568), COLCA1 (615693), COLCA2 (615694), POU2AF1 (601206), BTG4 (605673), MIR34B (611374), MIR34C (611375), SIK2 (608973), PPP2R1B (603113), ALG9 (606941), CRYAB (123590), HSPB2 (602179), DIXDC1 (610493), DLAT (608770), TIMM8B (606659), SDHD (602690), IL18 (600953), TEX12 (605791), BCO2 (611740), PTS (612719), PLET1 (611904), NCAM1 (116930), TTC12 (610732), ANKK1 (608774), DRD2 (126450), TMPRSS5 (606751), ZW10 (603954), USP28 (610748), HTR3B (604654), HTR3A (182139), ZBTB16 (176797), NNMT (600008), RBM7 (612413), REXO2 (607149), CADM1 (605686), ZPR1 (603901), APOA5 (606368), APOA4 (107690), APOC3 (107720), APOA1 (107680), SIK3 (614776), PAFAH1B2 (602508), SIDT2 (617551), TAGLN (600818), PCSK7 (604872), BACE1 (604252), BACE1-AS (614263), CEP164 (614848), DSCAML1 (611782), FXYD2 (601814), FXYD6 (606683), TMPRSS13 (610050), IL10RA (146933), TMPRSS4 (606565), SCN4B (608256), SCN2B (601327), JAML (609770), MPZL3 (611707), MPZL2 (604873), CD3E (186830), CD3D (186790), CD3G (186740), UBE4A (603753), ATP5MG (617473), KMT2A (159555), TMEM25 (613934), ARCN1 (600820), PHLDB1 (612834), TREH (275360), DDX6 (600326), CXCR5 (601613), BCL9L (609004), UPK2 (611558), FOXR1 (615755), RPS25 (180465), TRAPPC4 (610971), SLC37A4 (602671), HYOU1 (601746), VPS11 (608549), HMBS (609806), H2AFX (601772), DPAGT1 (191350), C2CD2L (617582), HINFP (607099), ABCG4 (607784), NLRX1 (611947), PDZD3 (607146), CBL (165360), MCAM (155735), RNF26 (606130), C1QTNF5 (608752), MFRP (606227), USP2 (604725), THY1 (188230), NECTIN1 (600644), TRIM29 (610658), POU2F3 (607394), ARHGEF12 (604763), GRIK4 (600282), TBCEL (610451), TECTA (602574), SC5D (602286), SORL1 (602005), MIR100HG (615965), MIR125B1 (610104), BLID (608853), MIRLET7A2 (612142), MIR100 (613186), UBASH3B (609201), CRTAM (612597), JHY (617594), BSX (611074), HSPA8 (600816), CLMP (611693), SCN3B (608214), ZNF202 (603430), VWA5A (602929), PANX3 (608422), TBRG1 (610614), SIAE (610079), SPA17 (608621), NRGN (602350), VSIG2 (606011), ESAM (614281), ROBO3 (608630), ROBO4 (607528), HEPN1 (611641), HEPACAM (611642), PKNOX2 (613066), FEZ1 (604825), EI24 (605170), STT3A (601134), CHEK1 (603078), ACRV1 (102525), PATE1 (606861), HYLS1 (610693), PUS3 (616283), DDX25 (607663), CDON (608707), RPUSD4 (617488), FAM118B (616587), SRPRA (182180), FOXRED1 (613622), TIRAP (606252), DCPS (610534), ST3GAL4 (104240), KIRREL3 (607761), ETS1 (164720), FLI1 (193067), SENCR (615815), KCNJ1 (600359), KCNJ5 (600734), TP53AIP1 (605426), ARHGAP32 (608541), BARX2 (604823), NFRKB (164013), APLP2 (104776), ST14 (606797), ADAMTS8 (605175), ADAMTS15 (607509), NTM (607938), OPCML (600632), SPATA19 (609805), IGSF9B (613773), JAM3 (606871), NCAPD3 (609276), VPS26B (610027), THYN1 (613739), ACAD8 (604773), B3GAT1 (151290)	CytoRegions Not Set				false	arr[hg19] 11q13.4q25(73,658,668-134,938,847) hmz	chr11:73658668-134938847
LST.OSCHP		LOH	16	q22.1	1168.178	117	20	DPEP3, DPEP2, DPEP2NB, DDX28, DUS2, NFATC3, ESRP2, MIR6773, PLA2G15, SLC7A6, SLC7A6OS, PRMT7, SMPD3, ZFP90, CDH3, CDH1, TANGO6, HAS3, CHTF8, UTP4	16	DPEP3 (609926), DPEP2 (609925), DDX28 (607618), DUS2 (609707), NFATC3 (602698), ESRP2 (612960), PLA2G15 (609362), SLC7A6 (605641), PRMT7 (610087), SMPD3 (605777), ZFP90 (609451), CDH3 (114021), CDH1 (192090), HAS3 (602428), CHTF8 (613202), UTP4 (607456)	CytoRegions Not Set				true	arr[hg19] 16q22.1(68,008,678-69,176,856) hmz	chr16:68008678-69176856
LST.OSCHP		LOH	2	p25.3	123267.873	8836	939	FAM110C, SH3YL1, ACP1, ALKAL2, LINC01865, LINC01874, LINC01875, LOC105373352, TMEM18, LINC01115, LINC01939, LOC101060391, SNTG2, TPO, PXDN, MYT1L, MYT1L-AS1, LINC01250, EIPR1, TRAPPC12, ADI1, RNASEH1, RNASEH1-AS1, RPS7, COLEC11, ALLC, DCDC2C, LINC01304, LOC105373394, LINC01249, LINC01248, SOX11, LINC01810, LINC01105, MIR7158, LOC400940, LINC01247, LINC01246, MIR7515HG, MIR7515, LINC00487, NRIR, CMPK2, RSAD2, RNF144A-AS1, RNF144A, LOC101929452, LOC100506274, LOC101929551, LINC00298, LINC00299, LINC01814, ID2-AS1, ID2, KIDINS220, MBOAT2, ASAP2, ITGB1BP1, CPSF3, IAH1, ADAM17, YWHAQ, TAF1B, GRHL1, LOC101929882, KLF11, CYS1, RRM2, C2orf48, MIR4261, HPCAL1, ODC1, SNORA80B, LOC101929715, NOL10, RN7SL832P, ATP6V1C2, PDIA6, LINC01954, KCNF1, FLJ33534, C2orf50, PQLC3, ROCK2, LINC00570, E2F6, GREB1, MIR4429, NTSR2, LPIN1, MIR548S, MIR4262, MIR3681HG, MIR3681, TRIB2, MIR3125, LOC100506474, LINC00276, FAM84A, NBAS, DDX1, LINC01804, MYCNUT, MYCNOS, MYCN, GACAT3, FAM49A, RAD51AP2, VSNL1, SMC6, GEN1, MSGN1, KCNS3, RDH14, NT5C1B-RDH14, NT5C1B, LINC01376, MIR4757, OSR1, LINC00954, TTC32, WDR35, LOC101928222, MATN3, LAPTM4A, SDC1, PUM2, RHOB, HS1BP3-IT1, HS1BP3, GDF7, LDAH, APOB, TDRD15, LINC01822, LINC01884, KLHL29, ATAD2B, UBXN2A, MFSD2B, WDCP, FKBP1B, SF3B6, FAM228B, TP53I3, PFN4, FAM228A, ITSN2, NCOA1, PTRHD1, CENPO, ADCY3, DNAJC27, DNAJC27-AS1, EFR3B, POMC, LINC01381, DNMT3A, MIR1301, DTNB, ASXL2, KIF3C, RAB10, GAREM2, HADHA, HADHB, ADGRF3, SELENOI, DRC1, OTOF, C2orf70, CIB4, KCNK3, SLC35F6, CENPA, DPYSL5, MAPRE3, LOC100129724, TMEM214, AGBL5-AS1, AGBL5, OST4, EMILIN1, KHK, CGREF1, ABHD1, PREB, PRR30, TCF23, SLC5A6, ATRAID, CAD, SLC30A3, DNAJC5G, TRIM54, UCN, MPV17, GTF3C2, GTF3C2-AS1, EIF2B4, SNX17, ZNF513, PPM1G, FTH1P3, NRBP1, KRTCAP3, IFT172, FNDC4, GCKR, C2orf16, ZNF512, CCDC121, GPN1, SUPT7L, SLC4A1AP, LINC01460, MRPL33, RBKS, BABAM2, BRE-AS1, MIR4263, LOC100505736, LOC100505716, FLJ31356, FOSL2, PLB1, LOC100505774, PPP1CB, SPDYA, TRMT61B, WDR43, SNORD92, SNORD53, SNORD53B, TOGARAM2, PCARE, CLIP4, ALK, LOC105374389, YPEL5, SNORA10B, LBH, LINC01936, LCLAT1, CAPN13, GALNT14, CAPN14, EHD3, XDH, SRD5A2, LINC01946, MEMO1, DPY30, SPAST, SLC30A6, NLRC4, YIPF4, BIRC6, MIR558, BIRC6-AS2, TTC27, MIR4765, LINC00486, LTBP1, MIR4430, RASGRP3, LOC105374454, FAM98A, LINC01317, MYADML, LINC01318, LINC01320, MIR548AD, LOC100288911, CRIM1, FEZ2, VIT, STRN, HEATR5B, GPATCH11, EIF2AK2, SULT6B1, CEBPZOS, CEBPZ, NDUFAF7, PRKD3, QPCT, CDC42EP3, LINC00211, RMDN2, RMDN2-AS1, CYP1B1, CYP1B1-AS1, ATL2, LINC01883, LOC101929596, HNRNPLL, GALM, SRSF7, GEMIN6, DHX57, MORN2, ARHGEF33, LOC375196, SOS1, CDKL4, MAP4K3, LOC728730, TMEM178A, THUMPD2, SLC8A1-AS1, SLC8A1, LINC01913, LINC01914, C2orf91, PKDCC, LOC102723824, EML4, COX7A2L, KCNG3, MTA3, OXER1, HAAO, LINC01819, LINC02580, ZFP36L2, LINC01126, THADA, PLEKHH2, C1GALT1C1L, DYNC2LI1, ABCG5, ABCG8, LRPPRC, PPM1B, SLC3A1, PREPL, CAMKMT, LINC01833, SIX3-AS1, SIX3, SIX2, LINC01121, SRBD1, PRKCE, EPAS1, LINC01820, LINC02583, TMEM247, ATP6V1E2, RHOQ, LOC100506142, PIGF, CRIPT, SOCS5, LINC01118, LINC01119, MCFD2, TTC7A, STPG4, CALM2, LOC101927043, EPCAM, MIR559, MSH2, KCNK12, HCG2040054, MSH6, FBXO11, FOXN2, PPP1R21, STON1-GTF2A1L, STON1, GTF2A1L, LHCGR, FSHR, MIR548BA, NRXN1, MIR8485, LOC730100, LINC01867, MIR4431, ASB3, GPR75-ASB3, CHAC2, ERLEC1, MIR3682, GPR75, PSME4, ACYP2, TSPYL6, C2orf73, SPTBN1, RPL23AP32, EML6, RTN4, CLHC1, RPS27A, MIR4426, MTIF2, PRORSD1P, CCDC88A, CFAP36, PPP4R3B, PNPT1, EFEMP1, MIR217HG, MIR217, MIR216A, MIR216B, LINC01813, LOC100129434, CCDC85A, VRK2, FANCL, LINC01795, LINC01122, LINC01793, MIR4432HG, MIR4432, BCL11A, PAPOLG, LINC01185, REL, PUS10, PEX13, KIAA1841, LOC339803, C2orf74, AHSA2P, USP34, SNORA70B, XPO1, FAM161A, CCT4, COMMD1, B3GNT2, MIR5192, TMEM17, EHBP1, LOC100132215, OTX1, DBIL5P2, WDPCP, MDH1, UGP2, VPS54, PELI1, LINC00309, LOC100507006, MIR4433B, MIR4433A, LGALSL, LINC01805, LOC101927402, AFTPH, MIR4434, LINC02579, SERTAD2, LINC01800, LINC02245, SLC1A4, CEP68, RAB1A, ACTR2, SPRED2, MIR4778, LINC01873, MEIS1-AS3, MEIS1, MEIS1-AS2, LINC01798, LINC01797, LINC01799, LINC01628, LINC01828, LINC01829, LOC101927661, ETAA1, LINC01812, C1D, WDR92, PNO1, PPP3R1, CNRIP1, PLEK, FBXO48, APLF, PROKR1, ARHGAP25, BMP10, GKN2, GKN1, ANTXR1, MIR3126, GFPT1, NFU1, AAK1, SNORA36C, ANXA4, GMCL1, SNRNP27, MXD1, ASPRV1, PCBP1-AS1, PCBP1, LINC01816, C2orf42, TIA1, PCYOX1, SNRPG, FAM136A, TGFA, TGFA-IT1, ADD2, FIGLA, CLEC4F, CD207, LINC01143, VAX2, ATP6V1B1, ATP6V1B1-AS1, ANKRD53, TEX261, OR7E91P, NAGK, MCEE, MPHOSPH10, PAIP2B, ZNF638, DYSF, CYP26B1, EXOC6B, SPR, EMX1, SFXN5, RAB11FIP5, NOTO, SMYD5, PRADC1, CCT7, FBXO41, EGR4, ALMS1, ALMS1-IT1, NAT8, ALMS1P1, NAT8B, TPRKB, DUSP11, C2orf78, STAMBP, ACTG2, DGUOK, DGUOK-AS1, TET3, BOLA3, BOLA3-AS1, MOB1A, MTHFD2, SLC4A5, DCTN1, DCTN1-AS1, C2orf81, WDR54, RTKN, INO80B, INO80B-WBP1, WBP1, MOGS, MRPL53, CCDC142, TTC31, LBX2, LBX2-AS1, PCGF1, TLX2, DQX1, AUP1, HTRA2, LOXL3, DOK1, M1AP, SEMA4F, HK2, LINC01291, POLE4, TACR1, MIR5000, EVA1A, LOC101927884, MRPL19, GCFC2, LRRTM4, LOC101927907, LOC101927967, LINC01851, SNAR-H, LOC101927948, LOC105374820, REG3G, REG1B, REG1A, REG1CP, REG3A, LOC101927987, CTNNA2, MIR4264, MIR8080, LRRTM1, LINC01815, DHFRP3, LINC01809, FUNDC2P2, SUCLG1, DNAH6, TRABD2A, TMSB10, KCMF1, LINC01964, TCF7L1, TCF7L1-IT1, LOC102724579, TGOLN2, RETSAT, ELMOD3, CAPG, SH2D6, PARTICL, MAT2A, GGCX, VAMP8, VAMP5, RNF181, TMEM150A, USP39, C2orf68, SFTPB, GNLY, ATOH8, MIR6071, LOC284950, ST3GAL5, ST3GAL5-AS1, POLR1A, PTCD3, SNORD94, IMMT, MIR4779, MRPL35, REEP1, KDM3A, CHMP3, RNF103-CHMP3, RNF103, RMND5A, CD8A, CD8B, ANAPC1P1, RGPD2, RGPD1, PLGLB1, PLGLB2, LOC285074, MIR4771-1, MIR4771-2, CYTOR, MIR4435-1, MIR4435-2, KRCC1, SMYD1, MIR4780, FABP1, THNSL2, FOXI3, TEX37, LOC101928371, EIF2AK3, LOC101928403, RPIA, ANKRD36BP2, MIR4436A, LSP1P4, LOC101927050, GGT8P, ACTR3BP2, FAM95A, ANKRD20A8P, LOC442028, TEKT4, MAL, MRPS5, ZNF514, ZNF2, PROM2, KCNIP3, FAHD2A, TRIM43B, TRIM43, LINC00342, ANKRD36C, FAHD2CP, GPAT2, ADRA2B, ASTL, DUSP2, STARD7, STARD7-AS1, SNORA112, TMEM127, CIAO1, SNRNP200, ITPRIPL1, NCAPH, NEURL3, LOC105373496, ARID5A, KANSL3, FER1L5, LMAN2L, CNNM4, MIR3127, CNNM3-DT, CNNM3, ANKRD23, ANKRD39, SEMA4C, FAM178B, LOC101927053, FAHD2B, ANKRD36, LOC100506076, LOC100506123, ANKRD36B, COX5B, ACTR1B, C2orf92, ZAP70, TMEM131, VWA3B, CNGA3, INPP4A, COA5, UNC50, MGAT4A, LOC101927070, KIAA1211L, TSGA10, C2orf15, LIPT1, MITD1, MRPL30, LYG2, LYG1, TXNDC9, EIF5B, REV1, AFF3, LINC01104, LONRF2, CHST10, NMS, PDCL3, LINC01849, NPAS2, LOC101927142, RPL31, TBC1D8, TBC1D8-AS1, CNOT11, SNORD89, RNF149, MIR5696, CREG2, RFX8, MAP4K4, LINC01127, IL1R2, IL1R1, IL1RL2, IL1RL1, IL18R1, IL18RAP, MIR4772, SLC9A4, SLC9A2, MFSD9, TMEM182, LINC01796, LINC01935, LOC100287010, LINC01831, LINC01102, LINC01103, LINC01114, LINC01158, POU3F3, LINC01159, LOC102724691, MRPS9, UTAT33, LINC01918, GPR45, TGFBRAP1, C2orf49, FHL2, LOC285000, NCK2, C2orf40, UXS1, PLGLA, RGPD3, CD8B2, ST6GAL2, MIR548AU, LINC01886, GACAT1, RGPD4-AS1, RGPD4, SLC5A7, LINC01593, LINC01594, SULT1C3, SULT1C2, SULT1C2P1, SULT1C4, GCC2, GCC2-AS1, LIMS1, LIMS1-AS1, RANBP2, CCDC138, EDAR, SH3RF3-AS1, SH3RF3, MIR4265, MIR4266, SEPT10, SOWAHC, RGPD5, RGPD6, LIMS3, LIMS4, LIMS3-LOC440895, LOC440895, LOC100288570, LINC01123, MIR4267, MALL, MIR4436B2, MIR4436B1, NPHP1, MTLN, LOC100507334, LINC01106, LOC105373553, BUB1, SNORD132, ACOXL, ACOXL-AS1, BCL2L11, MIR4435-2HG, ANAPC1, MERTK, TMEM87B, FBLN7, ZC3H8, ZC3H6, RGPD8, TTL, LOC105373562, POLR1B, CHCHD5, FLJ42351, SLC20A1, NT5DC4, CKAP2L, IL1A, IL1B, IL37, IL36G, IL36A, IL36B, IL36RN, IL1F10, IL1RN, PSD4, PAX8, PAX8-AS1, CBWD2, FOXD4L1, PGM5P3-AS1, PGM5P4-AS1, PGM5P4, FAM138B, MIR1302-3, WASH2P, DDX11L2, RPL23AP7, RABL2A, SLC35F5, MIR4782, LOC101060091, ACTR3, LINC01191, LOC100499194, DPP10, DPP10-AS3, DPP10-AS1, DDX18, CCDC93, INSIG2, LOC100506797, LOC101927709, EN1, MARCO, C1QL2, STEAP3, STEAP3-AS1, C2orf76, DBI, TMEM37, SCTR, LOC107105282, CFAP221, TMEM177, PTPN4, EPB41L5, TMEM185B, RALB, INHBB, LINC01101, GLI2, TFCP2L1, CLASP1, RNU4ATAC, NIFK-AS1, NIFK, TSN	505	FAM110C (611395), SH3YL1 (617314), ACP1 (171500), TMEM18 (613220), SNTG2 (608715), TPO (606765), PXDN (605158), MYT1L (613084), EIPR1 (608998), TRAPPC12 (614139), ADI1 (613400), RNASEH1 (604123), RPS7 (603658), COLEC11 (612502), SOX11 (600898), CMPK2 (611787), RSAD2 (607810), ID2 (600386), KIDINS220 (615759), MBOAT2 (611949), ASAP2 (603817), ITGB1BP1 (607153), CPSF3 (606029), ADAM17 (603639), YWHAQ (609009), TAF1B (604904), GRHL1 (609786), KLF11 (603301), RRM2 (180390), HPCAL1 (600207), ODC1 (165640), NOL10 (616197), PDIA6 (611099), KCNF1 (603787), ROCK2 (604002), E2F6 (602944), GREB1 (611736), NTSR2 (605538), LPIN1 (605518), TRIB2 (609462), FAM84A (611234), NBAS (608025), DDX1 (601257), MYCNUT (615968), MYCNOS (605374), MYCN (164840), GACAT3 (616132), VSNL1 (600817), SMC6 (609387), GEN1 (612449), MSGN1 (612209), KCNS3 (603888), RDH14 (616796), NT5C1B (610526), OSR1 (608891), WDR35 (613602), MATN3 (602109), SDC1 (186355), PUM2 (607205), RHOB (165370), HS1BP3 (609359), GDF7 (604651), LDAH (613570), APOB (107730), ATAD2B (615347), MFSD2B (617845), WDCP (616234), FKBP1B (600620), SF3B6 (607835), TP53I3 (605171), ITSN2 (604464), NCOA1 (602691), PTRHD1 (617342), CENPO (611504), ADCY3 (600291), DNAJC27 (613527), EFR3B (616797), POMC (176830), DNMT3A (602769), DTNB (602415), ASXL2 (612991), KIF3C (602845), RAB10 (612672), GAREM2 (617999), HADHA (600890), HADHB (143450), SELENOI (607915), DRC1 (615288), OTOF (603681), CIB4 (610646), KCNK3 (603220), CENPA (117139), DPYSL5 (608383), MAPRE3 (605788), TMEM214 (615301), AGBL5 (615900), EMILIN1 (130660), KHK (614058), CGREF1 (606137), ABHD1 (612195), PREB (606395), TCF23 (609635), SLC5A6 (604024), CAD (114010), SLC30A3 (602878), DNAJC5G (613946), TRIM54 (606474), UCN (600945), MPV17 (137960), GTF3C2 (604883), EIF2B4 (606687), SNX17 (605963), ZNF513 (613598), PPM1G (605119), NRBP1 (606010), IFT172 (607386), FNDC4 (611905), GCKR (600842), GPN1 (611479), SUPT7L (612762), SLC4A1AP (602655), MRPL33 (610059), RBKS (611132), BABAM2 (610497), FOSL2 (601575), PLB1 (610179), PPP1CB (600590), SPDYA (614029), WDR43 (616195), PCARE (613425), ALK (105590), YPEL5 (609726), LBH (611763), LCLAT1 (614241), CAPN13 (610228), GALNT14 (608225), CAPN14 (610229), EHD3 (605891), XDH (607633), SRD5A2 (607306), MEMO1 (611786), DPY30 (612032), SPAST (604277), SLC30A6 (611148), NLRC4 (606831), YIPF4 (617534), BIRC6 (605638), MIR558 (616473), LTBP1 (150390), RASGRP3 (609531), CRIM1 (606189), FEZ2 (604826), VIT (617693), STRN (614765), EIF2AK2 (176871), SULT6B1 (617152), CEBPZ (612828), NDUFAF7 (615898), PRKD3 (607077), QPCT (607065), CDC42EP3 (606133), RMDN2 (611872), CYP1B1 (601771), ATL2 (609368), HNRNPLL (611208), GALM (137030), SRSF7 (600572), GEMIN6 (607006), SOS1 (182530), MAP4K3 (604921), THUMPD2 (611751), SLC8A1 (182305), PKDCC (614150), EML4 (607442), COX7A2L (605771), KCNG3 (606767), MTA3 (609050), HAAO (604521), ZFP36L2 (612053), THADA (611800), PLEKHH2 (612723), DYNC2LI1 (617083), ABCG5 (605459), ABCG8 (605460), LRPPRC (607544), PPM1B (603770), SLC3A1 (104614), PREPL (609557), CAMKMT (609559), SIX3 (603714), SIX2 (604994), PRKCE (176975), EPAS1 (603349), ATP6V1E2 (617385), RHOQ (605857), PIGF (600153), CRIPT (604594), SOCS5 (607094), MCFD2 (607788), TTC7A (609332), CALM2 (114182), EPCAM (185535), MSH2 (609309), KCNK12 (607366), MSH6 (600678), FBXO11 (607871), FOXN2 (143089), STON1 (605357), GTF2A1L (605358), LHCGR (152790), FSHR (136435), NRXN1 (600565), ASB3 (605760), CHAC2 (617446), ERLEC1 (611229), GPR75 (606704), PSME4 (607705), ACYP2 (102595), SPTBN1 (182790), RTN4 (604475), RPS27A (191343), MTIF2 (603766), CCDC88A (609736), PPP4R3B (610352), PNPT1 (610316), EFEMP1 (601548), MIR217 (615096), MIR216A (610944), VRK2 (602169), FANCL (608111), BCL11A (606557), PAPOLG (616865), REL (164910), PUS10 (612787), PEX13 (601789), USP34 (615295), XPO1 (602559), FAM161A (613596), CCT4 (605142), COMMD1 (607238), B3GNT2 (605581), TMEM17 (614950), EHBP1 (609922), OTX1 (600036), WDPCP (613580), MDH1 (154200), UGP2 (191760), VPS54 (614633), PELI1 (614797), LGALSL (617902), SERTAD2 (617851), SLC1A4 (600229), CEP68 (616889), RAB1A (179508), ACTR2 (604221), SPRED2 (609292), MEIS1 (601739), ETAA1 (613196), C1D (606997), WDR92 (610729), PPP3R1 (601302), PLEK (173570), APLF (611035), PROKR1 (607122), ARHGAP25 (610587), BMP10 (608748), GKN1 (606402), ANTXR1 (606410), GFPT1 (138292), NFU1 (608100), AAK1 (616405), ANXA4 (106491), MXD1 (600021), ASPRV1 (611765), PCBP1 (601209), TIA1 (603518), PCYOX1 (610995), SNRPG (603542), FAM136A (616275), TGFA (190170), ADD2 (102681), FIGLA (608697), CD207 (604862), VAX2 (604295), ATP6V1B1 (192132), ANKRD53 (617009), NAGK (606828), MCEE (608419), MPHOSPH10 (605503), PAIP2B (611018), ZNF638 (614349), DYSF (603009), CYP26B1 (605207), EXOC6B (607880), SPR (182125), EMX1 (600034), SFXN5 (615572), RAB11FIP5 (605536), CCT7 (605140), FBXO41 (609108), EGR4 (128992), ALMS1 (606844), NAT8 (606716), NAT8B (608190), TPRKB (608680), DUSP11 (603092), STAMBP (606247), ACTG2 (102545), DGUOK (601465), TET3 (613555), BOLA3 (613183), MOB1A (609281), MTHFD2 (604887), SLC4A5 (606757), DCTN1 (601143), RTKN (602288), INO80B (616456), WBP1 (606961), MOGS (601336), MRPL53 (611857), LBX2 (607164), PCGF1 (610231), TLX2 (604240), AUP1 (602434), HTRA2 (606441), LOXL3 (607163), DOK1 (602919), SEMA4F (603706), HK2 (601125), POLE4 (607269), TACR1 (162323), MRPL19 (611832), GCFC2 (189901), LRRTM4 (610870), REG3G (609933), REG1B (167771), REG1A (167770), REG3A (167805), CTNNA2 (114025), LRRTM1 (610867), SUCLG1 (611224), DNAH6 (603336), TRABD2A (614912), TMSB10 (188399), KCMF1 (614719), TCF7L1 (604652), TGOLN2 (603062), RETSAT (617597), ELMOD3 (615427), CAPG (153615), PARTICL (616350), MAT2A (601468), GGCX (137167), VAMP8 (603177), VAMP5 (607029), RNF181 (612490), TMEM150A (616757), USP39 (611594), SFTPB (178640), GNLY (188855), ST3GAL5 (604402), POLR1A (616404), PTCD3 (614918), IMMT (600378), MRPL35 (611841), REEP1 (609139), KDM3A (611512), CHMP3 (610052), RNF103 (602507), CD8A (186910), CD8B (186730), RGPD2 (612705), PLGLB1 (173340), RGPD1 (612704), SMYD1 (606846), FABP1 (134650), THNSL2 (611261), FOXI3 (612351), EIF2AK3 (604032), RPIA (180430), MAL (188860), MRPS5 (611972), ZNF2 (194500), PROM2 (617160), KCNIP3 (604662), GPAT2 (616431), ADRA2B (104260), ASTL (608860), DUSP2 (603068), STARD7 (616712), TMEM127 (613403), CIAO1 (604333), SNRNP200 (601664), NCAPH (602332), NEURL3 (617206), ARID5A (611583), KANSL3 (617742), LMAN2L (609552), CNNM4 (607805), CNNM3 (607804), ANKRD23 (610736), SEMA4C (604462), COX5B (123866), ACTR1B (605144), ZAP70 (176947), TMEM131 (615659), VWA3B (614884), CNGA3 (600053), INPP4A (600916), COA5 (613920), UNC50 (617826), MGAT4A (604623), TSGA10 (607166), LIPT1 (610284), MRPL30 (611838), LYG2 (616547), TXNDC9 (612564), EIF5B (606086), REV1 (606134), AFF3 (601464), CHST10 (606376), PDCL3 (611678), NPAS2 (603347), RPL31 (617415), MAP4K4 (604666), IL1R2 (147811), IL1R1 (147810), IL1RL2 (604512), IL1RL1 (601203), IL18R1 (604494), IL18RAP (604509), SLC9A4 (600531), SLC9A2 (600530), POU3F3 (602480), MRPS9 (611975), GPR45 (604838), TGFBRAP1 (606237), FHL2 (602633), NCK2 (604930), C2orf40 (611752), UXS1 (609749), PLGLA (612212), RGPD3 (612706), ST6GAL2 (608472), RGPD4 (612707), SLC5A7 (608761), SULT1C3 (617151), SULT1C2 (602385), SULT1C4 (608357), GCC2 (612711), LIMS1 (602567), RANBP2 (601181), EDAR (604095), SEPT10 (611737), RGPD6 (612709), MALL (602022), NPHP1 (607100), BUB1 (602452), BCL2L11 (603827), MIR4435-2HG (617144), ANAPC1 (608473), MERTK (604705), TMEM87B (617203), FBLN7 (611551), RGPD8 (602752), RGPD5 (612708), TTL (608291), POLR1B (602000), CHCHD5 (616978), SLC20A1 (137570), CKAP2L (616174), IL1A (147760), IL1B (147720), IL37 (605510), IL36G (605542), IL36A (605509), IL36B (605508), IL36RN (605507), IL1F10 (615296), IL1RN (147679), PSD4 (614442), PAX8 (167415), CBWD2 (611079), FOXD4L1 (611084), RABL2A (605412), ACTR3 (604222), DPP10 (608209), DDX18 (606355), INSIG2 (608660), EN1 (131290), MARCO (604870), C1QL2 (614330), STEAP3 (609671), DBI (125950), SCTR (182098), PTPN4 (176878), EPB41L5 (611730), RALB (179551), INHBB (147390), GLI2 (165230), TFCP2L1 (609785), CLASP1 (605852), RNU4ATAC (601428), NIFK (611970), TSN (600575)	CytoRegions Not Set				true	arr[hg19] 2p25.3q14.3(21,493-123,289,366) hmz	chr2:21493-123289366
LST.OSCHP		LOH	1	p36.33	16095.324	1341	296	FAM87B, LINC00115, LINC01128, FAM41C, LINC02593, SAMD11, NOC2L, KLHL17, PLEKHN1, PERM1, HES4, ISG15, AGRN, LOC100288175, RNF223, C1orf159, LINC01342, MIR200B, MIR200A, MIR429, TTLL10, TNFRSF18, TNFRSF4, SDF4, B3GALT6, C1QTNF12, UBE2J2, SCNN1D, ACAP3, MIR6726, SNORD167, PUSL1, INTS11, MIR6727, CPTP, TAS1R3, DVL1, MIR6808, MXRA8, AURKAIP1, CCNL2, LOC148413, MRPL20, ANKRD65, TMEM88B, LINC01770, VWA1, ATAD3C, ATAD3B, ATAD3A, TMEM240, SSU72, FNDC10, LOC105378586, MIB2, MMP23B, MMP23A, CDK11B, SLC35E2B, CDK11A, SLC35E2A, NADK, GNB1, CALML6, TMEM52, CFAP74, GABRD, LOC105378591, PRKCZ, PRKCZ-AS1, FAAP20, SKI, MORN1, LOC100129534, RER1, PEX10, PLCH2, PANK4, HES5, TNFRSF14-AS1, TNFRSF14, LOC100996583, FAM213B, MMEL1, TTC34, ACTRT2, LINC00982, PRDM16, MIR4251, ARHGEF16, MEGF6, MIR551A, TPRG1L, WRAP73, TP73, TP73-AS1, CCDC27, SMIM1, LRRC47, CEP104, DFFB, C1orf174, LINC01134, LINC01346, LINC01345, LINC01777, LINC01646, AJAP1, MIR4689, NPHP4, KCNAB2, CHD5, RPL22, LOC102724450, RNF207, ICMT, LINC00337, HES3, GPR153, ACOT7, HES2, ESPN, MIR4252, TNFRSF25, PLEKHG5, NOL9, TAS1R1, ZBTB48, KLHL21, PHF13, THAP3, DNAJC11, LINC01672, CAMTA1-DT, CAMTA1, LOC102725193, VAMP3, PER3, UTS2, TNFRSF9, PARK7, ERRFI1, LINC01714, SLC45A1, RERE, LOC102724552, SNORD128, ENO1, MIR6728, ENO1-AS1, CA6, SLC2A7, SLC2A5, GPR157, MIR34AHG, MIR34A, LINC01759, H6PD, SPSB1, LOC100506022, SLC25A33, TMEM201, PIK3CD, PIK3CD-AS1, PIK3CD-AS2, CLSTN1, CTNNBIP1, LZIC, NMNAT1, MIR5697, RBP7, UBE4B, KIF1B, RNU6-2, PGD, CENPS, CENPS-CORT, CORT, DFFA, PEX14, CASZ1, C1orf127, TARDBP, MASP2, SRM, EXOSC10, LOC105376736, MTOR, MTOR-AS1, ANGPTL7, UBIAD1, DISP3, LINC01647, FBXO2, FBXO44, FBXO6, MAD2L2, DRAXIN, AGTRAP, C1orf167, LOC102724659, MTHFR, CLCN6, NPPA-AS1, NPPA, NPPB, KIAA2013, PLOD1, MFN2, MIIP, MIR6729, TNFRSF8, MIR7846, TNFRSF1B, MIR4632, VPS13D, SNORA59B, SNORA59A, DHRS3, MIR6730, AADACL4, AADACL3, C1orf158, PRAMEF12, PRAMEF1, LINC01784, PRAMEF11, HNRNPCL4, HNRNPCL3, HNRNPCL1, PRAMEF2, PRAMEF4, PRAMEF8, PRAMEF7, PRAMEF6, PRAMEF27, PRAMEF9, PRAMEF18, PRAMEF25, PRAMEF26, PRAMEF5, PRAMEF36P, PRAMEF34P, HNRNPCL2, PRAMEF22, PRAMEF10, PRAMEF33, PRAMEF15, PRAMEF13, PRAMEF14, PRAMEF19, PRAMEF17, PRAMEF20, LRRC38, PDPN, PRDM2, KAZN-AS1, KAZN, TMEM51-AS1, TMEM51, C1orf195, FHAD1, LOC101927417, EFHD2, CTRC, CELA2A, CELA2B, CASP9, DNAJC16, SCARNA21B, AGMAT, DDI2, RSC1A1, PLEKHM2, SLC25A34, SLC25A34-AS1, TMEM82, FBLIM1, UQCRHL, FLJ37453, SPEN, ZBTB17, SRARP, HSPB7, CLCNKA, CLCNKB, FAM131C, EPHA2, ARHGEF19, CPLANE2, FBXO42, SZRD1, SPATA21, NECAP2, LINC01772, CROCCP3	152	SAMD11 (616765), NOC2L (610770), PERM1 (615921), HES4 (608060), ISG15 (147571), AGRN (103320), MIR200B (612091), MIR200A (612090), MIR429 (612094), TNFRSF18 (603905), TNFRSF4 (600315), SDF4 (614282), B3GALT6 (615291), C1QTNF12 (616593), SCNN1D (601328), INTS11 (611354), CPTP (615467), TAS1R3 (605865), DVL1 (601365), MXRA8 (617293), AURKAIP1 (609183), CCNL2 (613482), MRPL20 (611833), VWA1 (611901), ATAD3C (617227), ATAD3B (612317), ATAD3A (612316), TMEM240 (616101), SSU72 (617680), MIB2 (611141), MMP23B (603321), CDK11B (176873), MMP23A (603320), CDK11A (116951), NADK (611616), GNB1 (139380), CALML6 (610171), GABRD (137163), PRKCZ (176982), FAAP20 (615183), SKI (164780), PEX10 (602859), PLCH2 (612836), PANK4 (606162), HES5 (607348), TNFRSF14 (602746), ACTRT2 (608535), PRDM16 (605557), MEGF6 (604266), MIR551A (615148), TPRG1L (611460), WRAP73 (606040), TP73 (601990), SMIM1 (615242), CEP104 (616690), DFFB (601883), AJAP1 (610972), NPHP4 (607215), KCNAB2 (601142), CHD5 (610771), RPL22 (180474), RNF207 (616923), ICMT (605851), HES3 (609971), GPR153 (614269), ACOT7 (602587), HES2 (609970), ESPN (606351), TNFRSF25 (603366), PLEKHG5 (611101), TAS1R1 (606225), ZBTB48 (165270), KLHL21 (616262), THAP3 (612532), DNAJC11 (614827), CAMTA1 (611501), VAMP3 (603657), PER3 (603427), UTS2 (604097), TNFRSF9 (602250), PARK7 (602533), ERRFI1 (608069), SLC45A1 (605763), RERE (605226), ENO1 (172430), CA6 (114780), SLC2A7 (610371), SLC2A5 (138230), MIR34A (611172), H6PD (138090), SPSB1 (611657), SLC25A33 (610816), PIK3CD (602839), CLSTN1 (611321), CTNNBIP1 (607758), LZIC (610458), NMNAT1 (608700), RBP7 (608604), UBE4B (613565), KIF1B (605995), PGD (172200), CENPS (609130), CORT (602784), DFFA (601882), PEX14 (601791), CASZ1 (609895), TARDBP (605078), MASP2 (605102), SRM (182891), EXOSC10 (605960), MTOR (601231), UBIAD1 (611632), DISP3 (611251), FBXO2 (607112), FBXO44 (609111), FBXO6 (605647), MAD2L2 (604094), DRAXIN (612682), AGTRAP (608729), MTHFR (607093), CLCN6 (602726), NPPA (108780), NPPB (600295), PLOD1 (153454), MFN2 (608507), MIIP (608772), TNFRSF8 (153243), TNFRSF1B (191191), VPS13D (608877), DHRS3 (612830), LRRC38 (615212), PDPN (608863), PRDM2 (601196), EFHD2 (616450), CTRC (601405), CELA2A (609443), CELA2B (609444), CASP9 (602234), AGMAT (617887), RSC1A1 (601966), PLEKHM2 (609613), SLC25A34 (610817), FBLIM1 (607747), SPEN (613484), ZBTB17 (604084), HSPB7 (610692), CLCNKA (602024), CLCNKB (602023), EPHA2 (176946), ARHGEF19 (612496), FBXO42 (609109), NECAP2 (611624)	CytoRegions Not Set				true	arr[hg19] 1p36.33p36.13(754,191-16,849,515) hmz	chr1:754191-16849515
LST.OSCHP		LOH	16	q12.2	5030.763	348	83	IRX3, LINC02140, LOC101927480, CRNDE, IRX5, IRX6, MMP2-AS1, MMP2, LPCAT2, CAPNS2, SLC6A2, CES1P2, CES1P1, CES1, CES5A, LOC283856, GNAO1, DKFZP434H168, MIR3935, AMFR, NUDT21, OGFOD1, BBS2, MT4, MT3, MT2A, MT1L, MT1E, MT1M, MT1JP, MT1A, MT1DP, MT1B, MT1F, MT1G, MT1H, MT1IP, MT1X, NUP93, MIR138-2, SLC12A3, MIR6863, HERPUD1, CETP, NLRC5, CPNE2, FAM192A, RSPRY1, ARL2BP, PLLP, CCL22, CX3CL1, CCL17, CIAPIN1, COQ9, POLR2C, DOK4, CCDC102A, ADGRG5, ADGRG1, ADGRG3, DRC7, KATNB1, KIFC3, MIR6772, LOC388282, CNGB1, TEPP, ZNF319, USB1, MMP15, CFAP20, CSNK2A2, CCDC113, PRSS54, GINS3, NDRG4, SETD6, CNOT1, SNORA46, SNORA50A, SLC38A7, GOT2	63	IRX3 (612985), CRNDE (615624), IRX5 (606195), IRX6 (606196), MMP2 (120360), LPCAT2 (612040), CAPNS2 (616767), SLC6A2 (163970), CES1 (114835), GNAO1 (139311), AMFR (603243), NUDT21 (604978), OGFOD1 (615857), BBS2 (606151), MT4 (606206), MT3 (139255), MT2A (156360), MT1L (156358), MT1E (156351), MT1M (156357), MT1JP (156356), MT1A (156350), MT1B (156349), MT1F (156352), MT1G (156353), MT1H (156354), MT1IP (156355), MT1X (156359), NUP93 (614351), MIR138-2 (613395), SLC12A3 (600968), HERPUD1 (608070), CETP (118470), NLRC5 (613537), CPNE2 (604206), FAM192A (617766), RSPRY1 (616585), ARL2BP (615407), PLLP (600340), CCL22 (602957), CX3CL1 (601880), CCL17 (601520), CIAPIN1 (608943), COQ9 (612837), POLR2C (180663), DOK4 (608333), ADGRG5 (616965), ADGRG1 (604110), KATNB1 (602703), KIFC3 (604535), CNGB1 (600724), TEPP (610264), USB1 (613276), MMP15 (602261), CFAP20 (617906), CSNK2A2 (115442), CCDC113 (616070), GINS3 (610610), NDRG4 (614463), SETD6 (616424), CNOT1 (604917), SLC38A7 (614236), GOT2 (138150)	CytoRegions Not Set				true	arr[hg19] 16q12.2q21(54,309,184-59,339,947) hmz	chr16:54309184-59339947
LST.OSCHP		LOH	X	q21.1	76768.441	5510	571	ITM2A, TBX22, CHMP1B2P, TENT5D, BRWD3, HMGN5, SH3BGRL, POU3F4, CYLC1, RPS6KA6, MIR548I4, HDX, UBE2DNL, APOOL, SATL1, LOC101928128, ZNF711, POF1B, MIR1321, CHM, MIR361, DACH2, KLHL4, CPXCR1, TGIF2LX, PABPC5-AS1, PABPC5, PCDH11X, MIR4454, NAP1L3, FAM133A, MIR548M, BRDTP1, DIAPH2, RPA4, DIAPH2-AS1, XRCC6P5, PCDH19, TNMD, TSPAN6, SRPX2, SYTL4, CSTF2, NOX1, XKRX, ARL13A, TRMT2B, TMEM35A, CENPI, DRP2, TAF7L, TIMM8A, BTK, RPL36A, RPL36A-HNRNPH2, GLA, HNRNPH2, ARMCX4, ARMCX1, ARMCX6, ARMCX3, ARMCX2, NXF5, ZMAT1, TCEAL2, TCEAL6, BEX5, TCP11X2, NXF2, NXF2B, TMSB15A, NXF4, ARMCX5, ARMCX5-GPRASP2, GPRASP1, GPRASP2, BHLHB9, LINC00630, RAB40AL, BEX1, NXF3, BEX4, TCEAL8, TCEAL5, BEX2, TCEAL7, TCEAL9, BEX3, RAB40A, LINC02589, TCEAL4, TCEAL3, TCEAL1, MORF4L2, MORF4L2-AS1, GLRA4, TMEM31, RAB9B, PLP1, TMSB15B-AS1, TMSB15B, LOC100101478, H2BFXP, H2BFWT, H2BFM, SLC25A53, ZCCHC18, LOC286437, FAM199X, ESX1, IL1RAPL2, TEX13A, NRK, SERPINA7, MUM1L1, CXorf57, MIR548AN, RNF128, TBC1D8B, RIPPLY1, CLDN2, MORC4, RBM41, NUP62CL, PIH1D3, FRMPD3-AS1, FRMPD3, PRPS1, TSC22D3, NCBP2L, MID2, LOC101928335, TEX13B, VSIG1, PSMD10, ATG4A, COL4A6, COL4A5, IRS4, LOC101928358, GUCY2F, NXT2, KCNE5, ACSL4, TMEM164, MIR652, MIR3978, AMMECR1, SNORD96B, RTL9, TDGF1P3, CHRDL1, PAK3, CAPN6, DCX, SERTM2, ALG13, TRPC5, TRPC5OS, RTL4, LHFPL1, AMOT, MIR4329, LOC101928437, XACT, HTR2C, SNORA35, MIR764, MIR1912, MIR1264, MIR1298, MIR1911, MIR448, IL13RA2, LRCH2, SNORA35B, RBMXL3, LUZP4, PLS3-AS1, PLS3, DANT2, DANT1, AGTR2, SLC6A14, CT83, LOC100126447, KLHL13, WDR44, MIR1277, DOCK11, IL13RA1, ZCCHC12, LINC01285, LONRF3, KIAA1210, PGRMC1, LOC101928336, SLC25A43, SLC25A5-AS1, SLC25A5, CXorf56, UBE2A, NKRF, SEPT6, MIR766, SOWAHD, RPL39, SNORA69, UPF3B, RNF113A, NDUFA1, AKAP14, NKAP, RHOXF1P1, RHOXF1-AS1, RHOXF2B, RHOXF2, RHOXF1, LINC01402, NKAPP1, ZBTB33, TMEM255A, ATP1B4, LAMP2, CUL4B, MCTS1, C1GALT1C1, CT47B1, CT47A12, CT47A5, CT47A8, CT47A11, CT47A1, CT47A2, CT47A10, CT47A4, CT47A3, CT47A9, CT47A6, CT47A7, GLUD2, MIR3672, GRIA3, THOC2, XIAP, LOC101928402, STAG2, TEX13D, SH2D1A, TENM1, TEX13C, LOC101928495, DCAF12L2, DCAF12L1, PRR32, ACTRT1, SMARCA1, OCRL, APLN, XPNPEP2, SASH3, ZDHHC9, UTP14A, BCORL1, ELF4, AIFM1, RAB33A, ZNF280C, SLC25A14, GPR119, RBMX2, FAM45BP, ENOX2, LOC105373338, LINC01201, ARHGAP36, IGSF1, OR13H1, FIRRE, STK26, FRMD7, RAP2C, RAP2C-AS1, MBNL3, HS6ST2, HS6ST2-AS1, USP26, TFDP3, GPC4, GPC3, GPC3-AS1, MIR363, MIR92A2, MIR19B2, MIR20B, MIR18B, MIR106A, CCDC160, PHF6, HPRT1, MIR450B, MIR450A1, MIR450A2, MIR542, MIR503HG, MIR503, MIR424, LINC00629, PLAC1, FAM122B, FAM122C, MOSPD1, LINC02243, SMIM10, RTL8B, RTL8C, RTL8A, SMIM10L2B, ETDB, SMIM10L2B-AS1, CT55, ZNF75D, ETDA, ETDC, ZNF449, LOC100506790, SMIM10L2A, INTS6L-AS1, INTS6L, SAGE2P, CT45A1, CT45A7, CT45A6, CT45A2, CT45A8, CT45A5, CT45A9, CT45A3, CT45A10, SAGE1, MMGT1, SLC9A6, FHL1, MAP7D3, ADGRG4, BRS3, HTATSF1, VGLL1, MIR934, LINC00892, CD40LG, ARHGEF6, RBMX, SNORD61, GPR101, ZIC3, LINC00889, FGF13, MIR504, FGF13-AS1, SRD5A1P1, F9, MCF2, ATP11C, MIR505, CXorf66, LOC728660, LOC389895, SOX3, LINC00632, CDR1, MIR320D2, SPANXB1, RNU6-2, LDOC1, SPANXA2-OT1, SPANXA2, SPANXA1, LOC645188, SPANXD, SPANXC, MAGEC3, MAGEC1, MAGEC2, SPANXN4, SPANXN3, SLITRK4, SPANXN2, UBE2NL, SPANXN1, SLITRK2, MIR892C, MIR890, MIR888, MIR892A, MIR892B, MIR891B, MIR891A, CXorf51B, CXorf51A, MIR513C, MIR513B, MIR513A1, MIR513A2, MIR506, MIR507, MIR508, MIR514B, MIR509-1, MIR509-2, MIR509-3, MIR510, MIR514A1, MIR514A2, MIR514A3, FMR1-AS1, FMR1, FMR1NB, AFF2, IDS, LINC00893, CXorf40A, HSFX3, HSFX4, MAGEA9, MAGEA9B, HSFX2, HSFX1, TMEM185A, MAGEA11, LINC00850, MAGEA8-AS1, MAGEA8, CXorf40B, LINC00894, MIR2114, MAMLD1, MTM1, MTMR1, CD99L2, HMGB3, MIR4330, GPR50-AS1, GPR50, VMA21, LOC105377213, PASD1, PRRG3, FATE1, CNGA2, MAGEA4-AS1, MAGEA4, GABRE, MIR224, MIR452, MAGEA5, MAGEA10-MAGEA5, MAGEA10, GABRA3, MIR105-1, MIR767, MIR105-2, GABRQ, MAGEA6, CSAG3, MAGEA2, MAGEA2B, CSAG4, MAGEA12, CSAG1, MAGEA3, CETN2, NSDHL, ZNF185, PNMA5, PNMA3, PNMA6A, MAGEA1, PNMA6F, ZNF275, LOC105373378, PNMA6E, ZFP92, TREX2, HAUS7, BGN, ATP2B3, CCNQ, LOC105373383, DUSP9, PNCK, SLC6A8, BCAP31, ABCD1, PLXNB3, SRPK3, IDH3G, SSR4, PDZD4, L1CAM, LCA10, AVPR2, ARHGAP4, NAA10, RENBP, HCFC1, HCFC1-AS1, TMEM187, MIR3202-1, MIR3202-2, IRAK1, MIR718, MECP2, OPN1LW, OPN1MW2, OPN1MW, OPN1MW3, TEX28, TKTL1, FLNA, EMD, RPL10, SNORA70, DNASE1L1, TAZ, CH17-340M24.3, ATP6AP1, GDI1, FAM50A, MIR6858, PLXNA3, LAGE3, UBL4A, SLC10A3, FAM3A, G6PD, IKBKG, FAM223B, FAM223A, CTAG1B, CTAG1A, CTAG2, GAB3, DKC1, SNORA36A, MIR664B, SNORA56, MPP1, SMIM9, F8, H2AFB2, H2AFB3, H2AFB1, F8A1, F8A3, F8A2, MIR1184-3, MIR1184-1, MIR1184-2, FUNDC2, CMC4, MTCP1, BRCC3, VBP1, RAB39B, CLIC2, TMLHE-AS1, LOC101927830, TMLHE, SPRY3, VAMP7	343	ITM2A (300222), TBX22 (300307), TENT5D (300976), BRWD3 (300553), HMGN5 (300385), SH3BGRL (300190), POU3F4 (300039), CYLC1 (300768), RPS6KA6 (300303), HDX (300994), APOOL (300955), ZNF711 (314990), POF1B (300603), CHM (300390), DACH2 (300608), KLHL4 (300348), TGIF2LX (300411), PABPC5 (300407), PCDH11X (300246), NAP1L3 (300117), DIAPH2 (300108), RPA4 (300767), DIAPH2-AS1 (300347), PCDH19 (300460), TNMD (300459), TSPAN6 (300191), SRPX2 (300642), SYTL4 (300723), CSTF2 (300907), NOX1 (300225), XKRX (300684), CENPI (300065), DRP2 (300052), TAF7L (300314), TIMM8A (300356), BTK (300300), RPL36A (300902), GLA (300644), HNRNPH2 (300610), ARMCX1 (300362), ARMCX3 (300364), ARMCX2 (300363), NXF5 (300319), ZMAT1 (301007), BEX5 (300693), NXF2 (300315), TMSB15A (300939), NXF4 (300318), GPRASP1 (300417), GPRASP2 (300969), BHLHB9 (300921), RAB40AL (300405), BEX1 (300690), NXF3 (300316), BEX4 (300692), BEX2 (300691), TCEAL7 (300771), BEX3 (300361), TCEAL1 (300237), MORF4L2 (300409), RAB9B (300285), PLP1 (300401), TMSB15B (301011), H2BFWT (300507), SLC25A53 (300941), ESX1 (300154), IL1RAPL2 (300277), TEX13A (300312), NRK (300791), SERPINA7 (314200), RNF128 (300439), RIPPLY1 (300575), CLDN2 (300520), MORC4 (300970), PIH1D3 (300933), FRMPD3 (301005), PRPS1 (311850), TSC22D3 (300506), MID2 (300204), TEX13B (300313), VSIG1 (300620), PSMD10 (300880), ATG4A (300663), COL4A6 (303631), COL4A5 (303630), IRS4 (300904), GUCY2F (300041), NXT2 (300320), KCNE5 (300328), ACSL4 (300157), AMMECR1 (300195), RTL9 (300965), CHRDL1 (300350), PAK3 (300142), CAPN6 (300146), DCX (300121), ALG13 (300776), TRPC5 (300334), LHFPL1 (300566), AMOT (300410), XACT (300901), HTR2C (312861), MIR448 (300686), IL13RA2 (300130), LUZP4 (300616), PLS3 (300131), DANT2 (301004), DANT1 (301001), AGTR2 (300034), SLC6A14 (300444), CT83 (300625), KLHL13 (300655), DOCK11 (300681), IL13RA1 (300119), ZCCHC12 (300701), KIAA1210 (300995), PGRMC1 (300435), SLC25A43 (300641), SLC25A5 (300150), CXorf56 (301012), UBE2A (312180), NKRF (300440), SEPT6 (300683), RPL39 (300899), UPF3B (300298), RNF113A (300951), NDUFA1 (300078), AKAP14 (300462), NKAP (300766), RHOXF1P1 (300973), RHOXF2 (300447), RHOXF1 (300446), ZBTB33 (300329), LAMP2 (309060), CUL4B (300304), MCTS1 (300587), C1GALT1C1 (300611), CT47B1 (300790), CT47A1 (300780), CT47A8 (300787), CT47A4 (300783), CT47A2 (300781), CT47A3 (300782), CT47A11 (300592), CT47A5 (300784), CT47A9 (300788), CT47A10 (300789), CT47A6 (300785), CT47A7 (300786), GLUD2 (300144), GRIA3 (305915), THOC2 (300395), XIAP (300079), STAG2 (300826), SH2D1A (300490), TENM1 (300588), ACTRT1 (300487), SMARCA1 (300012), OCRL (300535), APLN (300297), XPNPEP2 (300145), SASH3 (300441), ZDHHC9 (300646), UTP14A (300508), BCORL1 (300688), ELF4 (300775), AIFM1 (300169), RAB33A (300333), SLC25A14 (300242), GPR119 (300513), ENOX2 (300282), ARHGAP36 (300937), IGSF1 (300137), FIRRE (300999), STK26 (300547), FRMD7 (300628), MBNL3 (300413), HS6ST2 (300545), USP26 (300309), TFDP3 (300772), GPC4 (300168), GPC3 (300037), MIR19B2 (300722), MIR20B (300950), MIR106A (300792), PHF6 (300414), HPRT1 (308000), MIR503 (300865), MIR424 (300682), PLAC1 (300296), MOSPD1 (300674), RTL8C (300213), ZNF75D (314997), ZNF449 (300627), CT45A1 (300648), CT45A6 (300797), CT45A2 (300793), CT45A5 (300796), CT45A3 (300794), SAGE1 (300359), SLC9A6 (300231), FHL1 (300163), MAP7D3 (300930), BRS3 (300107), HTATSF1 (300346), VGLL1 (300583), CD40LG (300386), ARHGEF6 (300267), RBMX (300199), GPR101 (300393), ZIC3 (300265), FGF13 (300070), F9 (300746), MCF2 (311030), ATP11C (300516), SOX3 (313430), CDR1 (302650), SPANXB1 (300669), LDOC1 (300402), SPANXA2 (300493), SPANXA1 (300305), SPANXD (300671), SPANXD (300670), SPANXC (300330), MAGEC3 (300469), MAGEC1 (300223), MAGEC2 (300468), SPANXN4 (300667), SPANXN3 (300666), SLITRK4 (300562), SPANXN2 (300665), SPANXN1 (300664), SLITRK2 (300561), MIR506 (300877), MIR508 (300874), MIR509-3 (300876), MIR509-1 (300875), MIR510 (300866), FMR1-AS1 (300805), FMR1 (309550), AFF2 (300806), IDS (300823), CXorf40A (300954), MAGEA9 (300342), MAGEA9B (300764), TMEM185A (300031), MAGEA11 (300344), LINC00850 (300892), MAGEA8 (300341), MAMLD1 (300120), MTM1 (300415), MTMR1 (300171), CD99L2 (300846), HMGB3 (300193), GPR50 (300207), VMA21 (300913), PASD1 (300993), PRRG3 (300685), FATE1 (300450), CNGA2 (300338), MAGEA4 (300175), GABRE (300093), MIR224 (300769), MAGEA5 (300340), MAGEA10 (300343), GABRA3 (305660), MIR105-1 (300811), MIR105-2 (300812), GABRQ (300349), MAGEA6 (300176), MAGEA2B (300549), MAGEA2 (300173), MAGEA12 (300177), CSAG1 (300944), MAGEA3 (300174), CETN2 (300006), NSDHL (300275), ZNF185 (300381), PNMA5 (300916), PNMA3 (300675), PNMA6A (300917), MAGEA1 (300016), TREX2 (300370), HAUS7 (300540), BGN (301870), ATP2B3 (300014), CCNQ (300708), DUSP9 (300134), PNCK (300680), SLC6A8 (300036), BCAP31 (300398), ABCD1 (300371), PLXNB3 (300214), SRPK3 (301002), IDH3G (300089), SSR4 (300090), PDZD4 (300634), L1CAM (308840), AVPR2 (300538), ARHGAP4 (300023), NAA10 (300013), RENBP (312420), HCFC1 (300019), TMEM187 (300059), IRAK1 (300283), MIR718 (300929), MECP2 (300005), OPN1LW (300822), OPN1MW (300821), TEX28 (300092), TKTL1 (300044), FLNA (300017), EMD (300384), RPL10 (312173), DNASE1L1 (300081), TAZ (300394), ATP6AP1 (300197), GDI1 (300104), FAM50A (300453), PLXNA3 (300022), LAGE3 (300060), UBL4A (312070), SLC10A3 (312090), FAM3A (300492), G6PD (305900), IKBKG (300248), CTAG1A (300657), CTAG1B (300156), CTAG2 (300396), GAB3 (300482), DKC1 (300126), MPP1 (305360), F8 (300841), H2AFB3 (300445), F8A1 (305423), MTCP1 (300116), BRCC3 (300617), VBP1 (300133), RAB39B (300774), CLIC2 (300138), TMLHE (300777), SPRY3 (300531), VAMP7 (300053)	CytoRegions Not Set				true	arr[hg19] Xq21.1q28(78,450,923-155,219,364) hmz	chrX:78450923-155219364
LST.OSCHP		LOH	4	q34.3	2956.367	198	6	LINC00290, LINC02500, TEMN3-AS1, LOC90768, MIR1305, TENM3	1	TENM3 (610083)	CytoRegions Not Set				false	arr[hg19] 4q34.3q35.1(180,257,369-183,213,736) hmz	chr4:180257369-183213736
LST.OSCHP		LOH	13	q11	43107.518	3488	343	LINC00417, ANKRD20A9P, LINC00408, LINC00442, LOC107984132, TUBA3C, LOC101928697, ANKRD26P3, LINC00421, TPTE2, LINC00350, MPHOSPH8, PSPC1, ZMYM5, ZMYM2, LINC01072, GJA3, GJB2, GJB6, CRYL1, MIR4499, IFT88, IL17D, EEF1AKMT1, XPO4, LINC00367, LATS2, SAP18, SKA3, MRPL57, LINC01046, MIPEPP3, LINC00539, GRK6P1, ZDHHC20, MICU2, FGF9, LINC00424, LINC00540, LINC00621, BASP1P1, SGCG, SACS, SACS-AS1, LINC00327, TNFRSF19, MIPEP, PCOTH, C1QTNF9B, ANKRD20A19P, SPATA13, MIR2276, SPATA13-AS1, C1QTNF9, LINC00566, PARP4, TPTE2P6, ATP12A, RNF17, CENPJ, TPTE2P1, PABPC3, AMER2, LINC00463, LINC01053, MTMR6, NUP58, ATP8A2, SHISA2, LINC00415, RNF6, CDK8, WASF3, GPR12, USP12, USP12-AS1, USP12-AS2, LINC00412, RPL21, RPL21P28, SNORD102, SNORA27, RASL11A, GTF3A, MTIF3, LNX2, POLR1D, GSX1, PLUT, PDX1, LINC00543, CDX2, URAD, FLT3, PAN3-AS1, PAN3, FLT1, POMP, SLC46A3, MTUS2, MTUS2-AS1, SLC7A1, LOC102723345, UBL3, LINC00297, LINC00572, LINC00544, LINC00365, LINC00384, KATNAL1, LINC00426, LINC01058, UBE2L5, HMGB1, USPL1, ALOX5AP, LINC00398, LINC00545, TEX26-AS1, MEDAG, TEX26, HSPH1, B3GLCT, RXFP2, EEF1DP3, FRY-AS1, FRY, ZAR1L, BRCA2, N4BP2L1, N4BP2L2, MINOS1P1, N4BP2L2-IT2, PDS5B, LINC00423, KL, STARD13, STARD13-AS, LINC02344, RFC3, LINC02343, LINC00457, NBEA, MAB21L1, LINC00445, DCLK1, SOHLH2, CCDC169-SOHLH2, CCDC169, SPART, SPART-AS1, CCNA1, SERTM1, RFXAP, SMAD9, ALG5, EXOSC8, SUPT20H, CSNK1A1L, LINC01048, LINC00547, POSTN, TRPC4, LINC00571, UFM1, LINC00437, LINC00366, FREM2, FREM2-AS1, STOML3, PROSER1, NHLRC3, LHFPL6, COG6, MIR4305, LINC00332, LINC00548, LINC00598, FOXO1, MIR320D1, MRPS31, SLC25A15, TPTE2P5, MIR621, SUGT1P3, ELF1, WBP4, MIR3168, KBTBD6, LOC101929140, KBTBD7, MTRF1, NAA16, OR7E37P, RGCC, VWA8, MIR5006, VWA8-AS1, DGKH, AKAP11, LINC02341, TNFSF11, FAM216B, LINC01050, LINC00428, EPSTI1, DNAJC15, LINC00400, ENOX1, ENOX1-AS2, CCDC122, LACC1, LINC00284, LINC00390, SMIM2-AS1, SMIM2, SMIM2-IT1, MIR8079, SERP2, TUSC8, TSC22D1, TSC22D1-AS1, LINC00407, LINC00330, NUFIP1, GPALPP1, LOC101929259, GTF2F2, KCTD4, TPT1, SNORA31B, SNORA31, TPT1-AS1, SLC25A30, SLC25A30-AS1, COG3, ERICH6B, LINC01055, SPERT, SIAH3, ZC3H13, CPB2-AS1, CPB2, LCP1, LRRC63, LINC00563, RUBCNL, LINC01198, LRCH1, ESD, HTR2A, HTR2A-AS1, LINC00562, SUCLA2, NUDT15, MED4, MED4-AS1, ITM2B, RB1-DT, RB1, LPAR6, RCBTB2, LINC00462, CYSLTR2, FNDC3A, MLNR, LOC105370203, CDADC1, CAB39L, SETDB2, SETDB2-PHF11, PHF11, RCBTB1, ARL11, EBPL, KPNA3, CTAGE10P, SPRYD7, DLEU2, MIR3613, TRIM13, KCNRG, MIR16-1, MIR15A, DLEU1, ST13P4, DLEU1-AS1, DLEU7, DLEU7-AS1, RNASEH2B-AS1, RNASEH2B, GUCY1B2, C13orf42, FAM124A, SERPINE3, MIR5693, INTS6, INTS6-AS1, MIR4703, WDFY2, DHRS12, TMEM272, CCDC70, ATP7B, ALG11, UTP14C, NEK5, LOC101929657, NEK3, MRPS31P5, LINC02333, THSD1, VPS36, CKAP2, TPTE2P3, HNRNPA1L2, SUGT1, CNMD, MIR759, PCDH8, OLFM4, LINC01065, LINC00558, LINC00458, MIR1297, MIR5007, PRR20D, PRR20C, PRR20B, PRR20A, PRR20E, PCDH17, LINC02338, LINC00374, DIAPH3, DIAPH3-AS1, DIAPH3-AS2, LINC00434, TDRD3, LINC00378, MIR3169, PCDH20, LINC02339	167	TUBA3C (602528), TPTE2 (606791), MPHOSPH8 (611626), PSPC1 (612408), ZMYM5 (616443), ZMYM2 (602221), GJA3 (121015), GJB2 (121011), GJB6 (604418), CRYL1 (609877), IFT88 (600595), IL17D (607587), EEF1AKMT1 (617793), XPO4 (611449), LATS2 (604861), SAP18 (602949), MRPL57 (611997), ZDHHC20 (617972), MICU2 (610632), FGF9 (600921), SGCG (608896), SACS (604490), TNFRSF19 (606122), MIPEP (602241), PCOTH (617122), C1QTNF9B (614148), SPATA13 (613324), C1QTNF9 (614285), PARP4 (607519), ATP12A (182360), RNF17 (605793), CENPJ (609279), PABPC3 (604680), AMER2 (614659), MTMR6 (603561), NUP58 (607615), ATP8A2 (605870), SHISA2 (617324), RNF6 (604242), CDK8 (603184), WASF3 (605068), GPR12 (600752), USP12 (603091), RPL21 (603636), RASL11A (612403), GTF3A (600860), LNX2 (609733), POLR1D (613715), GSX1 (616542), PDX1 (600733), CDX2 (600297), URAD (615804), FLT3 (136351), PAN3 (617448), FLT1 (165070), POMP (613386), SLC46A3 (616764), SLC7A1 (104615), UBL3 (604711), KATNAL1 (614764), HMGB1 (163905), USPL1 (617470), ALOX5AP (603700), HSPH1 (610703), B3GLCT (610308), RXFP2 (606655), FRY (614818), BRCA2 (600185), N4BP2L2 (615788), PDS5B (605333), KL (604824), STARD13 (609866), RFC3 (600405), NBEA (604889), MAB21L1 (601280), DCLK1 (604742), SOHLH2 (616066), SPART (607111), CCNA1 (604036), RFXAP (601861), SMAD9 (603295), ALG5 (604565), EXOSC8 (606019), SUPT20H (613417), POSTN (608777), TRPC4 (603651), UFM1 (610553), FREM2 (608945), STOML3 (608327), LHFPL6 (606710), COG6 (606977), FOXO1 (136533), MRPS31 (611992), SLC25A15 (603861), ELF1 (189973), WBP4 (604981), KBTBD6 (617738), KBTBD7 (617739), MTRF1 (604601), RGCC (610077), VWA8 (617509), DGKH (604071), AKAP11 (604696), TNFSF11 (602642), EPSTI1 (607441), DNAJC15 (615339), ENOX1 (610914), CCDC122 (613408), LACC1 (613409), TSC22D1 (607715), NUFIP1 (604354), GTF2F2 (189969), TPT1 (600763), SLC25A30 (610793), COG3 (606975), SIAH3 (615609), ZC3H13 (616453), CPB2 (603101), LCP1 (153430), LRCH1 (610368), ESD (133280), HTR2A (182135), SUCLA2 (603921), NUDT15 (615792), MED4 (605718), ITM2B (603904), RB1 (614041), LPAR6 (609239), RCBTB2 (603524), CYSLTR2 (605666), FNDC3A (615794), MLNR (602885), CAB39L (612175), SETDB2 (607865), PHF11 (607796), RCBTB1 (607867), ARL11 (609351), EBPL (617335), KPNA3 (601892), SPRYD7 (607866), DLEU2 (605766), TRIM13 (605661), KCNRG (607947), MIR16-1 (609704), MIR15A (609703), DLEU1 (605765), RNASEH2B (610326), GUCY1B2 (603695), INTS6 (604331), WDFY2 (610418), DHRS12 (616163), ATP7B (606882), ALG11 (613666), UTP14C (608969), NEK5 (616731), NEK3 (604044), THSD1 (616821), VPS36 (610903), CKAP2 (611569), SUGT1 (604098), CNMD (605147), PCDH8 (603580), OLFM4 (614061), PCDH17 (611760), DIAPH3 (614567), TDRD3 (614392), PCDH20 (614449)	CytoRegions Not Set				true	arr[hg19] 13q11q21.2(19,084,822-62,192,340) hmz	chr13:19084822-62192340
LST.OSCHP		LOH	19	q11	31338.667	2665	1053	LINC00662, LOC101927151, LOC100420587, LOC102724908, LINC00906, LOC102724958, LINC01532, UQCRFS1, LOC284395, VSTM2B, POP4, PLEKHF1, C19orf12, CCNE1, URI1, ZNF536, TSHZ3, LINC01791, THEG5, LINC01533, LINC01782, ZNF507, LOC400684, DPY19L3, PDCD5, ANKRD27, SNORA68B, RGS9BP, NUDT19, TDRD12, SLC7A9, CEP89, FAAP24, RHPN2, GPATCH1, WDR88, LRP3, SLC7A10, CEBPA, CEBPA-DT, CEBPG, PEPD, CHST8, KCTD15, LSM14A, KIAA0355, GPI, PDCD2L, UBA2, WTIP, ZNF807, SCGB1B2P, SCGB2B2, SCGB2B3P, ZNF302, ZNF181, ZNF599, LINC01801, LINC00904, LINC01838, ZNF30-AS1, ZNF30, ZNF792, GRAMD1A, SCN1B, HPN, HPN-AS1, FXYD3, MIR6887, LGI4, FXYD1, FXYD7, FXYD5, FAM187B, LSR, USF2, HAMP, MAG, CD22, MIR5196, FFAR1, FFAR3, GPR42, LINC01531, FFAR2, KRTDAP, DMKN, SBSN, GAPDHS, TMEM147-AS1, TMEM147, ATP4A, LINC01766, HAUS5, RBM42, ETV2, COX6B1, UPK1A, UPK1A-AS1, ZBTB32, KMT2B, IGFLR1, U2AF1L4, PSENEN, LIN37, HSPB6, PROSER3, ARHGAP33, LINC01529, PRODH2, NPHS1, KIRREL2, APLP1, NFKBID, HCST, TYROBP, LRFN3, LOC105372383, SDHAF1, SYNE4, ALKBH6, LOC101927572, CLIP3, THAP8, WDR62, OVOL3, POLR2I, TBCB, CAPNS1, COX7A1, ZNF565, ZNF146, LOC100134317, LINC00665, ZFP14, ZFP82, LOC644189, ZNF566, LOC728752, ZNF260, ZNF529, ZNF529-AS1, ZNF382, ZNF461, LINC01534, ZNF567, ZNF850, LOC728485, ZNF790-AS1, ZNF790, ZNF345, ZNF829, ZNF568, ZNF420, ZNF585A, ZNF585B, ZNF383, LINC01535, LOC284412, HKR1, ZNF527, ZNF569, ZNF570, ZNF793-AS1, ZNF793, ZNF571-AS1, ZNF540, ZNF571, ZFP30, ZNF781, ZNF607, ZNF573, LOC644554, LOC100631378, WDR87, SIPA1L3, SNORD152, DPF1, PPP1R14A, SPINT2, YIF1B, C19orf33, KCNK6, CATSPERG, PSMD8, GGN, SPRED3, FAM98C, RASGRP4, RYR1, MAP4K1, LOC105372397, EIF3K, ACTN4, CAPN12, LGALS7, LGALS7B, LGALS4, ECH1, HNRNPL, RINL, SIRT2, NFKBIB, CCER2, SARS2, MRPS12, FBXO17, FBXO27, ACP7, PAK4, NCCRP1, SYCN, IFNL3, IFNL4, IFNL2, IFNL1, LRFN1, GMFG, SAMD4B, PAF1, MED29, ZFP36, MIR4530, PLEKHG2, RPS16, SUPT5H, SNORD175, TIMM50, DLL3, SELENOV, EID2B, EID2, LGALS13, LOC100129935, LGALS16, LGALS17A, LGALS14, CLC, LEUTX, DYRK1B, MIR6719, FBL, FCGBP, PSMC4, ZNF546, ZNF780B, ZNF780A, MAP3K10, TTC9B, CNTD2, AKT2, MIR641, C19orf47, PLD3, MIR6796, HIPK4, PRX, SERTAD1, SERTAD3, BLVRB, SPTBN4, SHKBP1, LTBP4, NUMBL, COQ8B, ITPKC, C19orf54, SNRPA, MIA, MIA-RAB4B, RAB4B, RAB4B-EGLN2, EGLN2, CYP2T1P, CYP2A6, CYP2A7, CYP2G1P, CYP2B7P, CYP2B6, CYP2A13, CYP2F1, CYP2S1, AXL, HNRNPUL1, CCDC97, TGFB1, B9D2, TMEM91, EXOSC5, BCKDHA, B3GNT8, DMAC2, ERICH4, PCAT19, LINC01480, CEACAM21, CEACAM4, CEACAM7, CEACAM5, CEACAM6, CEACAM3, LYPD4, DMRTC2, RPS19, MIR6797, CD79A, ARHGEF1, LOC100505585, RABAC1, ATP1A3, GRIK5, ZNF574, POU2F2, LOC100505622, MIR4323, DEDD2, ZNF526, GSK3A, ERF, CIC, PAFAH1B3, PRR19, TMEM145, MEGF8, MIR8077, CNFN, LOC101930071, LIPE-AS1, LIPE, CXCL17, CEACAM1, CEACAM8, PSG3, PSG8, PSG8-AS1, PSG10P, PSG1, PSG6, PSG7, PSG11, PSG2, PSG5, PSG4, LOC284344, PSG9, PRG1, CD177, TEX101, LYPD3, PHLDB3, ETHE1, ZNF575, XRCC1, PINLYP, IRGQ, ZNF576, ZNF428, SRRM5, CADM4, PLAUR, IRGC, SMG9, KCNN4, LYPD5, ZNF283, ZNF404, LOC100505715, ZNF45, ZNF221, ZNF155, LOC101928063, ZNF230, ZNF222, ZNF223, ZNF284, ZNF224, LOC100379224, ZNF225, ZNF234, ZNF226, ZNF227, ZNF233, ZNF235, ZNF112, ZNF285, ZNF229, ZNF180, CEACAM20, CEACAM22P, IGSF23, PVR, MIR4531, CEACAM19, CEACAM16, BCL3, MIR8085, CBLC, BCAM, NECTIN2, TOMM40, APOE, APOC1, APOC1P1, APOC4, APOC4-APOC2, APOC2, CLPTM1, RELB, CLASRP, ZNF296, GEMIN7, GEMIN7-AS1, PPP1R37, NKPD1, TRAPPC6A, BLOC1S3, EXOC3L2, MARK4, CKM, KLC3, ERCC2, PPP1R13L, CD3EAP, ERCC1, MIR6088, FOSB, RTN2, PPM1N, VASP, OPA3, GPR4, EML2, MIR330, EML2-AS1, GIPR, MIR642A, MIR642B, SNRPD2, QPCTL, FBXO46, BHMG1, SIX5, DM1-AS, DMPK, DMWD, RSPH6A, SYMPK, FOXA3, IRF2BP1, MYPOP, NANOS2, NOVA2, CCDC61, MIR769, PGLYRP1, IGFL4, LOC400706, IGFL3, IGFL2, IGFL2-AS1, LOC93429, IGFL1, HIF3A, PPP5C, CCDC8, PNMA8A, PPP5D1, PNMA8B, CALM3, PTGIR, GNG8, DACT3, DACT3-AS1, PRKD2, MIR320E, STRN4, FKRP, SLC1A5, SNAR-E, AP2S1, ARHGAP35, NPAS1, TMEM160, ZC3H4, SAE1, BBC3, MIR3190, MIR3191, CCDC9, INAFM1, C5AR1, C5AR2, DHX34, MEIS3, SLC8A2, KPTN, NAPA-AS1, NAPA, ZNF541, BICRA, EHD2, NOP53, SNORD23, NOP53-AS1, SELENOW, TPRX1, CRX, SULT2A1, SNAR-A12, SNAR-A13, SNAR-C5, SNAR-C1, SNAR-C2, SNAR-A1, SNAR-A2, SNAR-A6, SNAR-A3, SNAR-A10, SNAR-A4, SNAR-A8, SNAR-A11, SNAR-A5, SNAR-A14, SNAR-A9, SNAR-A7, SNAR-C4, SNAR-C3, BSPH1, ELSPBP1, CABP5, PLA2G4C, PLA2G4C-AS1, LIG1, ZSWIM9, CARD8, CARD8-AS1, ZNF114, CCDC114, EMP3, TMEM143, SYNGR4, KDELR1, GRIN2D, GRWD1, KCNJ14, CYTH2, LMTK3, SULT2B1, FAM83E, SPACA4, RPL18, SPHK2, DBP, CA11, SEC1P, NTN5, FUT2, LOC105447645, MAMSTR, RASIP1, IZUMO1, FUT1, FGF21, BCAT2, HSD17B14, PLEKHA4, PPP1R15A, TULP2, NUCB1, NUCB1-AS1, DHDH, BAX, FTL, GYS1, RUVBL2, MIR6798, LHB, LOC101059948, CGB3, SNAR-G2, CGB2, CGB1, SNAR-G1, CGB5, CGB8, CGB7, NTF4, KCNA7, SNRNP70, LIN7B, C19orf73, PPFIA3, HRC, TRPM4, SLC6A16, MIR4324, CD37, TEAD2, DKKL1, LOC101928295, CCDC155, PTH2, GFY, SLC17A7, PIH1D1, ALDH16A1, FLT3LG, RPL13A, RPL13AP5, SNORD32A, SNORD33, SNORD34, SNORD35A, RPS11, SNORD35B, MIR150, FCGRT, RCN3, NOSIP, PRRG2, PRR12, RRAS, SCAF1, IRF3, BCL2L12, PRMT1, MIR5088, ADM5, CPT1C, TSKS, AP2A1, MIR6799, FUZ, MED25, MIR6800, PTOV1-AS1, PTOV1, MIR4749, PTOV1-AS2, PNKP, AKT1S1, TBC1D17, MIR4750, IL4I1, NUP62, ATF5, MIR4751, SIGLEC11, SIGLEC16, VRK3, ZNF473, LOC400710, SNAR-B2, SNAR-B1, SNAR-D, IZUMO2, MYH14, KCNC3, NAPSB, NAPSA, NR1H2, POLD1, SPIB, MYBPC2, FAM71E1, EMC10, JOSD2, ASPDH, LRRC4B, SNAR-F, SYT3, C19orf81, SHANK1, CLEC11A, GPR32, LOC105372440, ACP4, C19orf48, SNORD88B, SNORD88A, SNORD88C, LINC01869, KLK1, KLK15, LOC105372441, KLK3, KLK2, KLKP1, KLK4, KLK5, KLK6, KLK7, KLK8, KLK9, KLK10, KLK11, KLK12, KLK13, KLK14, CTU1, SIGLEC9, SIGLEC7, LOC101928517, SIGLEC17P, MIR8074, CD33, SIGLECL1, LINC01872, IGLON5, VSIG10L, ETFB, CLDND2, NKG7, LIM2, C19orf84, SIGLEC10, LOC100129083, SIGLEC8, CEACAM18, SIGLEC12, SIGLEC6, ZNF175, LINC01530, SIGLEC5, SIGLEC14, SPACA6P-AS, SPACA6, MIR99B, MIRLET7E, MIR125A, HAS1, FPR1, FPR2, FPR3, ZNF577, ZNF649-AS1, ZNF649, ZNF613, ZNF350-AS1, ZNF350, ZNF615, ZNF614, ZNF432, ZNF841, ZNF616, ZNF836, PPP2R1A, MIR6801, ZNF766, MIR643, ZNF480, ZNF610, ZNF880, ZNF528-AS1, ZNF528, ZNF534, ZNF578, ZNF808, ZNF701, ZNF137P, ZNF83, ZNF611, ZNF600, ZNF28, ZNF468, ZNF320, ZNF888, ZNF321P, ZNF816-ZNF321P, ZNF816, ZNF702P, ERVV-1, ERVV-2, ZNF160, ZNF415, ZNF347, ZNF665, ZNF818P, ZNF677, VN1R2, VN1R4, FAM90A27P, BIRC8, ZNF845, ZNF525, ZNF765, ZNF765-ZNF761, TPM3P9, ZNF761, ZNF813, ZNF331, LOC284379, DPRX, MIR512-2, MIR512-1, MIR1323, MIR498, MIR520E, MIR515-1, MIR515-2, MIR519E, MIR520F, MIR519C, MIR1283-1, MIR520A, MIR526B, MIR519B, MIR525, MIR523, MIR518F, MIR520B, MIR518B, MIR526A1, MIR520C, MIR518C, MIR524, MIR517A, MIR519D, MIR521-2, MIR520D, MIR517B, MIR520G, MIR516B2, MIR526A2, MIR518E, MIR518A1, MIR518D, MIR516B1, MIR518A2, MIR517C, MIR520H, MIR521-1, MIR522, MIR519A1, MIR527, MIR516A1, MIR1283-2, MIR516A2, MIR519A2, MIR371A, MIR371B, MIR372, MIR373, NLRP12, MYADM, PRKCG, CACNG7, CACNG8, MIR935, CACNG6, VSTM1, TARM1, OSCAR, NDUFA3, TFPT, PRPF31, CNOT3, LENG1, TMC4, MBOAT7, TSEN34, RPS9, LILRB3, LILRA6, LILRB5, LILRB2, MIR4752, LILRA3, LILRA5, LILRA4, LAIR1, TTYH1, LENG8-AS1, LENG8, LENG9, CDC42EP5, LAIR2, KIR3DX1, LILRA2, LILRA1, LILRB1, MIR8061, LILRB4, LILRP2, KIR3DL3, KIR2DL3, LOC101928804, KIR2DL1, KIR2DL4, KIR3DL1, KIR2DS4, KIR3DL2, FCAR, NCR1, NLRP7, NLRP2, GP6, RDH13, EPS8L1, PPP1R12C, MIR7975, TNNT1, TNNI3, DNAAF3, SYT5, PTPRH, TMEM86B, PPP6R1, MIR6804, MIR6802, MIR6803, HSPBP1, BRSK1, TMEM150B, KMT5C, COX6B2, FAM71E2, IL11, TMEM190, TMEM238, RPL28, MIR6805, UBE2S, SNORD157, SHISA7, ISOC2, ZNF628, NAT14, SSC5D, SBK2, SBK3, ZNF579, FIZ1, ZNF524, ZNF865, ZNF784, ZNF580, ZNF581, CCDC106, U2AF2, EPN1, NLRP9, RFPL4A, RFPL4AL1, NLRP11, NLRP4, NLRP13, NLRP8, NLRP5, LINC01864, ZNF787, ZNF444, GALP, ZSCAN5B, ZSCAN5C, ZSCAN5A, EDDM13, ZNF542P, ZNF582, ZNF582-AS1, ZNF583, ZNF667, ZNF667-AS1, ZNF471, ZFP28, ZNF470, ZNF71, SMIM17, ZNF835, ZIM2-AS1, ZIM2, PEG3, PEG3-AS1, MIMT1, USP29, ZIM3, DUXA, ZNF264, AURKC, ZNF805, ZNF460-AS1, ZNF460, ZNF543, ZNF304, TRAPPC2B, ZNF547, ZNF548, ZNF17, ZNF749, VN1R1, ZNF772, ZNF419, ZNF773, ZNF549, ZNF550, ZNF416, ZIK1, ZNF530, ZNF134, ZNF211, ZSCAN4, ZNF551, ZNF154, ZNF671, ZNF776, ZNF586, ZNF552, FKBP1AP1, ZNF587B, ZNF587, UBE2CP5, ZNF814, ZNF417, ZNF418, ZNF256, C19orf18, ZNF606, LOC100128398, ZSCAN1, ZNF135, ZSCAN18, ZNF329, ZNF274, ZNF544, ZNF8, ZNF8-ERVK3-1, ERVK3-1, LOC105372480, ZSCAN22, MIR6806, A1BG, A1BG-AS1, ZNF497, LOC105372483, ZNF837, MIR4754, RPS5, RNF225, LINC02560, ZNF584, ZNF132, ZNF324B, ZNF324, ZNF446, SLC27A5, ZBTB45, TRIM28, MIR6807, CHMP2A, UBE2M, MZF1-AS1, MZF1, CENPBD1P1	572	UQCRFS1 (191327), POP4 (606114), PLEKHF1 (615200), C19orf12 (614297), CCNE1 (123837), URI1 (603494), TSHZ3 (614119), DPY19L3 (613894), PDCD5 (604583), RGS9BP (607814), SLC7A9 (604144), CEP89 (615470), FAAP24 (610884), RHPN2 (617932), LRP3 (603159), SLC7A10 (607959), CEBPA (116897), CEBPG (138972), PEPD (613230), CHST8 (610190), KCTD15 (615240), LSM14A (610677), GPI (172400), PDCD2L (615661), UBA2 (613295), WTIP (614790), SCGB2B2 (615063), ZNF181 (606741), SCN1B (600235), HPN (142440), FXYD3 (604996), LGI4 (608303), FXYD1 (602359), FXYD7 (606684), FXYD5 (606669), LSR (616582), USF2 (600390), HAMP (606464), MAG (159460), CD22 (107266), FFAR1 (603820), FFAR3 (603821), GPR42 (603822), FFAR2 (603823), KRTDAP (617212), DMKN (617211), SBSN (609969), GAPDHS (609169), TMEM147 (613585), ATP4A (137216), HAUS5 (613432), RBM42 (613232), ETV2 (609358), COX6B1 (124089), UPK1A (611557), ZBTB32 (605859), KMT2B (606834), IGFLR1 (614143), U2AF1L4 (601080), PSENEN (607632), HSPB6 (610695), ARHGAP33 (614902), PRODH2 (616377), NPHS1 (602716), KIRREL2 (607762), APLP1 (104775), HCST (604089), TYROBP (604142), LRFN3 (612809), SDHAF1 (612848), SYNE4 (615535), ALKBH6 (613304), CLIP3 (607382), THAP8 (612536), WDR62 (613583), OVOL3 (616442), POLR2I (180662), TBCB (601303), CAPNS1 (114170), COX7A1 (123995), ZNF565 (614275), ZNF146 (601505), ZNF260 (613749), ZNF382 (609516), ZNF461 (608640), ZNF568 (617566), ZNF420 (617216), HKR1 (165250), ZNF569 (613904), ZNF540 (613903), ZFP30 (617317), SIPA1L3 (616655), DPF1 (601670), PPP1R14A (608153), SPINT2 (605124), KCNK6 (603939), CATSPERG (613452), PSMD8 (617844), GGN (609966), SPRED3 (609293), RASGRP4 (607320), RYR1 (180901), MAP4K1 (601983), EIF3K (609596), ACTN4 (604638), CAPN12 (608839), LGALS7 (600615), LGALS7B (617139), LGALS4 (602518), ECH1 (600696), HNRNPL (603083), SIRT2 (604480), NFKBIB (604495), CCER2 (617634), SARS2 (612804), MRPS12 (603021), FBXO17 (609094), FBXO27 (609099), ACP7 (610490), PAK4 (605451), NCCRP1 (615901), IFNL3 (607402), IFNL4 (615090), IFNL2 (607401), IFNL1 (607403), LRFN1 (612807), GMFG (604104), PAF1 (610506), MED29 (612914), ZFP36 (190700), PLEKHG2 (611893), RPS16 (603675), SUPT5H (602102), TIMM50 (607381), DLL3 (602768), SELENOV (607919), EID2 (609773), LGALS13 (608717), LGALS14 (607260), CLC (153310), DYRK1B (604556), FBL (134795), FCGBP (617553), PSMC4 (602707), MAP3K10 (600137), AKT2 (164731), PLD3 (615698), HIPK4 (611712), PRX (605725), SERTAD1 (617850), SERTAD3 (612125), BLVRB (600941), SPTBN4 (606214), SHKBP1 (617322), LTBP4 (604710), NUMBL (604018), COQ8B (615567), ITPKC (606476), SNRPA (182285), MIA (601340), RAB4B (612945), EGLN2 (606424), CYP2A6 (122720), CYP2A7 (608054), CYP2G1P (601133), CYP2B6 (123930), CYP2A13 (608055), CYP2F1 (124070), CYP2S1 (611529), AXL (109135), HNRNPUL1 (605800), TGFB1 (190180), B9D2 (611951), EXOSC5 (606492), BCKDHA (608348), B3GNT8 (615357), DMAC2 (617262), CEACAM5 (114890), CEACAM6 (163980), CEACAM3 (609142), DMRTC2 (614806), RPS19 (603474), CD79A (112205), ARHGEF1 (601855), RABAC1 (604925), ATP1A3 (182350), GRIK5 (600283), POU2F2 (164176), DEDD2 (617078), ZNF526 (614387), GSK3A (606784), ERF (611888), CIC (612082), PAFAH1B3 (603074), MEGF8 (604267), CNFN (611764), LIPE (151750), CXCL17 (611387), CEACAM1 (109770), CEACAM8 (615747), PSG3 (176392), PSG8 (176397), PSG10P (176399), PSG1 (176390), PSG6 (176395), PSG7 (176396), PSG11 (176401), PSG2 (176391), PSG5 (176394), PSG4 (176393), PSG9 (176398),  (605157), CD177 (162860), TEX101 (612665), LYPD3 (609484), ETHE1 (608451), XRCC1 (194360), CADM4 (609744), PLAUR (173391), SMG9 (613176), KCNN4 (602754), ZNF45 (194554), ZNF155 (604086), ZNF222 (617357), ZNF224 (194555), ZNF234 (604750), ZNF235 (604749), ZNF112 (603994), ZNF180 (606740), PVR (173850), CEACAM19 (606691), CEACAM16 (614591), BCL3 (109560), CBLC (608453), BCAM (612773), NECTIN2 (600798), TOMM40 (608061), APOE (107741), APOC1 (107710), APOC4 (600745), APOC2 (608083), CLPTM1 (604783), RELB (604758), ZNF296 (613226), GEMIN7 (607419), TRAPPC6A (610396), BLOC1S3 (609762), EXOC3L2 (616927), MARK4 (606495), CKM (123310), KLC3 (601334), ERCC2 (126340), PPP1R13L (607463), CD3EAP (107325), ERCC1 (126380), FOSB (164772), RTN2 (603183), VASP (601703), OPA3 (606580), GPR4 (600551), EML2 (617494), GIPR (137241), SNRPD2 (601061), FBXO46 (609117), SIX5 (600963), DMPK (605377), DMWD (609857), RSPH6A (607548), SYMPK (602388), FOXA3 (602295), IRF2BP1 (615331), MYPOP (617861), NANOS2 (608228), NOVA2 (601991), PGLYRP1 (604963), IGFL4 (610547), IGFL3 (610546), IGFL2 (610545), IGFL1 (610544), HIF3A (609976), PPP5C (600658), CCDC8 (614145), CALM3 (114183), PTGIR (600022), DACT3 (611112), PRKD2 (607074), STRN4 (614767), FKRP (606596), SLC1A5 (109190), AP2S1 (602242), ARHGAP35 (605277), NPAS1 (603346), SAE1 (613294), BBC3 (605854), C5AR1 (113995), C5AR2 (609949), DHX34 (615475), SLC8A2 (601901), KPTN (615620), NAPA (603215), BICRA (605690), EHD2 (605890), NOP53 (605691), SELENOW (603235), TPRX1 (611166), CRX (602225), SULT2A1 (125263), BSPH1 (612213), ELSPBP1 (607443), CABP5 (607315), PLA2G4C (603602), LIG1 (126391), CARD8 (609051), ZNF114 (603996), CCDC114 (615038), EMP3 (602335), SYNGR4 (608373), KDELR1 (131235), GRIN2D (602717), GRWD1 (610597), KCNJ14 (603953), CYTH2 (602488), SULT2B1 (604125), SPACA4 (609932), RPL18 (604179), SPHK2 (607092), DBP (124097), CA11 (604644), FUT2 (182100), MAMSTR (610349), RASIP1 (609623), IZUMO1 (609278), FUT1 (211100), FGF21 (609436), BCAT2 (113530), HSD17B14 (612832), PLEKHA4 (607769), PPP1R15A (611048), TULP2 (602309), NUCB1 (601323), DHDH (606377), BAX (600040), FTL (134790), GYS1 (138570), RUVBL2 (604788), LHB (152780), CGB3 (118860), CGB2 (608824), CGB1 (608823), CGB5 (608825), CGB8 (608827), CGB7 (608826), NTF4 (162662), KCNA7 (176268), SNRNP70 (180740), LIN7B (612331), PPFIA3 (603144), HRC (142705), TRPM4 (606936), SLC6A16 (607972), CD37 (151523), TEAD2 (601729), DKKL1 (605418), PTH2 (608386), SLC17A7 (605208), PIH1D1 (611480), ALDH16A1 (613358), FLT3LG (600007), RPS11 (180471), MIR150 (611114), FCGRT (601437), NOSIP (616759), PRRG2 (604429), PRR12 (616633), RRAS (165090), SCAF1 (617264), IRF3 (603734), BCL2L12 (610837), PRMT1 (602950), CPT1C (608846), TSKS (608253), AP2A1 (601026), FUZ (610622), MED25 (610197), PTOV1 (610195), PNKP (605610), AKT1S1 (610221), TBC1D17 (616659), IL4I1 (609742), NUP62 (605815), ATF5 (606398), SIGLEC11 (607157), ZNF473 (617908), MYH14 (608568), KCNC3 (176264), NAPSA (605631), NR1H2 (600380), POLD1 (174761), SPIB (606802), MYBPC2 (160793), EMC10 (614545), JOSD2 (615324), SYT3 (600327), SHANK1 (604999), CLEC11A (604713), GPR32 (603195), ACP4 (606362), KLK1 (147910), KLK15 (610601), KLK3 (176820), KLK2 (147960), KLK4 (603767), KLK5 (605643), KLK6 (602652), KLK7 (604438), KLK8 (605644), KLK9 (605504), KLK10 (602673), KLK11 (604434), KLK12 (605539), KLK13 (605505), KLK14 (606135), CTU1 (612694), SIGLEC9 (605640), SIGLEC7 (604410), CD33 (159590), VSIG10L (617740), ETFB (130410), NKG7 (606008), LIM2 (154045), SIGLEC10 (606091), SIGLEC8 (605639), SIGLEC12 (606094), SIGLEC6 (604405), ZNF175 (601139), SIGLEC5 (604200), MIR99B (614510), MIRLET7E (611250), MIR125A (611191), HAS1 (601463), FPR1 (136537), FPR2 (136538), FPR3 (136539), ZNF649 (611903), ZNF350 (605422), PPP2R1A (605983), ZNF480 (613910), ZNF528 (615580), ZNF137P (604079), ZNF83 (194558), ZNF468 (616841), ZNF320 (606427), ZNF160 (600398), ZNF331 (606043), DPRX (611165), MIR520C (615908), MIR519D (614247), MIR520G (616272), MIR520H (614755), MIR371A (612043), MIR372 (612044), MIR373 (611954), NLRP12 (609648), MYADM (609959), PRKCG (176980), CACNG7 (606899), CACNG8 (606900), CACNG6 (606898), VSTM1 (616804), TARM1 (616802), OSCAR (606862), NDUFA3 (603832), TFPT (609519), PRPF31 (606419), CNOT3 (604910), TMC4 (617181), MBOAT7 (606048), TSEN34 (608754), RPS9 (603631), LILRB3 (604820), LILRB5 (604814), LILRB2 (604815), LILRA3 (604818), LILRA5 (606047), LILRA4 (607517), LAIR1 (602992), TTYH1 (605784), LENG8 (616575), CDC42EP5 (609171), LAIR2 (602993), LILRA2 (604812), LILRA1 (604810), LILRB1 (604811), LILRB4 (604821), KIR3DL3 (610095), KIR2DL3 (604938), KIR2DL1 (604936), KIR2DL4 (604945), KIR3DL1 (604946), KIR2DS4 (604955), KIR3DL2 (604947), FCAR (147045), NCR1 (604530), NLRP7 (609661), NLRP2 (609364), GP6 (605546), EPS8L1 (614987), PPP1R12C (613245), TNNT1 (191041), TNNI3 (191044), DNAAF3 (614566), SYT5 (600782), PTPRH (602510), TMEM86B (617806), PPP6R1 (610875), HSPBP1 (612939), BRSK1 (609235), TMEM150B (617291), KMT5C (613198), IL11 (147681), RPL28 (603638), UBE2S (610309), SHISA7 (617328), ISOC2 (612928), ZNF628 (610671), FIZ1 (609133), ZNF580 (617888), CCDC106 (613478), U2AF2 (191318), EPN1 (607262), NLRP9 (609663), RFPL4A (612601), NLRP11 (609664), NLRP4 (609645), NLRP13 (609660), NLRP8 (609659), NLRP5 (609658), ZNF444 (607874), GALP (611178), ZNF582 (615600), ZNF667 (611024), ZFP28 (616798), ZNF71 (194545), PEG3 (601483), USP29 (609546), DUXA (611168), ZNF264 (604668), AURKC (603495), ZNF460 (604755), ZNF543 (616847), ZNF304 (613840), VN1R1 (605234), ZNF419 (617410), ZNF134 (604076), ZNF211 (601856), ZSCAN4 (613419), ZNF154 (604085), ZNF256 (606956), ZNF606 (613905), ZNF135 (604077), ZNF274 (605467), ZNF8 (194532), ZSCAN22 (165260), A1BG (138670), RPS5 (603630), ZNF132 (604074), ZNF324 (617477), SLC27A5 (603314), TRIM28 (601742), CHMP2A (610893), UBE2M (603173), MZF1 (194550)	CytoRegions Not Set				false	arr[hg19] 19q11q13.43(27,754,572-59,093,239) hmz	chr19:27754572-59093239
LST.OSCHP		LOH	3	p26.3	60130.49	4769	604	LINC01986, CHL1-AS2, CHL1, CHL1-AS1, LINC01266, CNTN6, CNTN4, CNTN4-AS2, CNTN4-AS1, IL5RA, TRNT1, CRBN, LOC100130207, LRRN1, SETMAR, SUMF1, ITPR1-DT, ITPR1, EGOT, BHLHE40-AS1, BHLHE40, ARL8B, EDEM1, MIR4790, GRM7-AS3, GRM7, GRM7-AS2, GRM7-AS1, LOC101927394, LMCD1-AS1, LMCD1, LINC00312, SSUH2, CAV3, OXTR, RAD18, SRGAP3, SRGAP3-AS2, SRGAP3-AS3, SRGAP3-AS4, THUMPD3, THUMPD3-AS1, SETD5, LHFPL4, MTMR14, CPNE9, BRPF1, OGG1, CAMK1, TADA3, ARPC4, ARPC4-TTLL3, TTLL3, RPUSD3, CIDEC, JAGN1, IL17RE, IL17RC, CRELD1, PRRT3, PRRT3-AS1, EMC3, EMC3-AS1, CIDECP, FANCD2, FANCD2OS, BRK1, VHL, IRAK2, TATDN2, GHRLOS, LINC00852, GHRL, SEC13, ATP2B2, MIR378B, MIR885, ATP2B2-IT2, LINC00606, SLC6A11, SLC6A1, SLC6A1-AS1, HRH1, ATG7, VGLL4, TAMM41, SYN2, TIMP4, PPARG, TSEN2, MKRN2OS, MKRN2, RAF1, TMEM40, CAND2, RPL32, SNORA7A, LINC02022, IQSEC1, NUP210, HDAC11-AS1, HDAC11, FBLN2, SNORA93, LINC00620, WNT7A, FGD5P1, TPRXL, CHCHD4, TMEM43, XPC, LSM3, LINC01267, SLC6A6, GRIP2, CCDC174, C3orf20, LINC02011, FGD5, FGD5-AS1, NR2C2, MRPS25, RBSN, COL6A4P1, CAPN7, SH3BP5-AS1, SH3BP5, METTL6, EAF1, COLQ, MIR4270, HACL1, BTD, ANKRD28, MIR3134, MIR563, GALNT15, DPH3, OXNAD1, RFTN1, LINC00690, DAZL, PLCL2, MIR3714, TBC1D5, LOC105376975, LOC339862, SATB1, SATB1-AS1, KCNH8, MIR4791, EFHB, RAB5A, PP2D1, KAT2B, MIR3135A, SGO1, SGO1-AS1, LOC101927829, VENTXP7, ZNF385D, ZNF385D-AS1, ZNF385D-AS2, UBE2E2-AS1, UBE2E2, MIR548AC, UBE2E1-AS1, UBE2E1, NKIRAS1, RPL15, NR1D2, LINC00691, THRB, LOC101927854, THRB-AS1, RARB, LOC105376997, TOP2B, MIR4442, NGLY1, OXSM, LINC00692, LRRC3B, NEK10, SLC4A7, EOMES, LINC01980, LINC01981, CMC1, AZI2, ZCWPW2, LINC00693, RBMS3-AS3, RBMS3, RBMS3-AS1, LINC01985, TGFBR2, GADL1, MIR466, STT3B, OSBPL10, OSBPL10-AS1, ZNF860, GPD1L, CMTM8, CMTM7, CMTM6, MIR548AY, DYNC1LI1, CNOT10, TRIM71, CCR4, GLB1, TMPPE, CRTAP, SUSD5, FBXL2, UBP1, CLASP2, PDCD6IP, LOC101928135, ARPP21, MIR128-2, STAC, DCLK3, LINC02033, TRANK1, EPM2AIP1, MLH1, LRRFIP2, LOC152048, GOLGA4, C3orf35, ITGA9, ITGA9-AS1, CTDSPL, MIR26A1, VILL, PLCD1, DLEC1, ACAA1, MYD88, OXSR1, SLC22A13, SLC22A14, XYLB, ACVR2B-AS1, ACVR2B, EXOG, SCN5A, SCN10A, SCN11A, WDR48, GORASP1, TTC21A, MIR6822, CSRNP1, XIRP1, CX3CR1, CCR8, SLC25A38, RPSA, SNORA6, SNORA62, MOBP, MYRIP, EIF1B-AS1, EIF1B, ENTPD3, ENTPD3-AS1, RPL14, ZNF619, ZNF620, ZNF621, CTNNB1, ULK4, TRAK1, CCK, LYZL4, VIPR1, VIPR1-AS1, SEC22C, SS18L2, NKTR, LOC101928323, ZBTB47, KLHL40, HHATL, HHATL-AS1, CCDC13, CCDC13-AS1, LINC02158, HIGD1A, ACKR2, CYP8B1, ZNF662, KRBOX1-AS1, KRBOX1, FAM198A, POMGNT2, SNRK, SNRK-AS1, ANO10, ABHD5, MIR138-1, TOPAZ1, TCAIM, C3orf86, LINC01988, ZNF445, ZNF852, ZKSCAN7, ZNF660, ZNF660-ZNF197, ZNF197-AS1, ZNF197, ZNF35, ZNF502, ZNF501, KIAA1143, KIF15, MIR564, TMEM42, TGM4, ZDHHC3, EXOSC7, CLEC3B, CDCP1, TMEM158, LARS2, LARS2-AS1, LIMD1, LIMD1-AS1, SACM1L, SLC6A20, LZTFL1, CCR9, FYCO1, CXCR6, XCR1, CCR1, CCR3, CCR2, LOC102724297, CCR5, CCRL2, LINC02009, LTF, RTP3, LRRC2, LRRC2-AS1, TDGF1, FAM240A, ALS2CL, TMIE, PRSS50, PRSS46P, PRSS45, PRSS42, MYL3, PTH1R, CCDC12, NBEAL2, NRADDP, SETD2, KIF9-AS1, KIF9, SNORD13J, KLHL18, PTPN23, SCAP, ELP6, CSPG5, SMARCC1, SNORD146, DHX30, MIR1226, MAP4, CDC25A, MIR4443, CAMP, ZNF589, FCF1P2, NME6, SPINK8, MIR2115, FBXW12, PLXNB1, CCDC51, TMA7, ATRIP, ATRIP-TREX1, TREX1, SHISA5, PFKFB4, MIR6823, UCN2, COL7A1, MIR711, UQCRC1, SNORA94, TMEM89, SLC26A6, MIR6824, CELSR3, MIR4793, LINC02585, NCKIPSD, IP6K2, PRKAR2A, PRKAR2A-AS1, SLC25A20, ARIH2OS, ARIH2, P4HTM, WDR6, DALRD3, MIR425, NDUFAF3, MIR191, IMPDH2, QRICH1, QARS, MIR6890, USP19, LAMB2, LAMB2P1, CCDC71, KLHDC8B, C3orf84, CCDC36, C3orf62, MIR4271, USP4, GPX1, RHOA, TCTA, AMT, NICN1, DAG1, BSN-DT, BSN, APEH, MST1, RNF123, AMIGO3, GMPPB, IP6K1, CDHR4, INKA1, UBA7, MIR5193, TRAIP, CAMKV, MST1R, MON1A, RBM6, RBM5, RBM5-AS1, SEMA3F-AS1, SEMA3F, GNAT1, SLC38A3, GNAI2, MIR5787, SEMA3B-AS1, SEMA3B, MIR6872, LSMEM2, IFRD2, HYAL3, NAA80, HYAL1, HYAL2, TUSC2, RASSF1, RASSF1-AS1, ZMYND10, NPRL2, CYB561D2, TMEM115, CACNA2D2, C3orf18, HEMK1, CISH, MAPKAPK3, MIR4787, DOCK3, MANF, RBM15B, DCAF1, RAD54L2, TEX264, GRM2, IQCF6, IQCF4, IQCF3, IQCF2, IQCF5-AS1, IQCF5, IQCF1, RRP9, PARP3, GPR62, PCBP4, ABHD14B, ABHD14A, ABHD14A-ACY1, ACY1, RPL29, DUSP7, LINC00696, POC1A, ALAS1, TLR9, TWF2, LOC101929054, PPM1M, WDR82, MIRLET7G, GLYCTK, GLYCTK-AS1, MIR135A1, DNAH1, BAP1, PHF7, SEMA3G, TNNC1, NISCH, STAB1, NT5DC2, SMIM4, PBRM1, GNL3, SNORD136, SNORD19, SNORD19B, SNORD19C, SNORD69, GLT8D1, SPCS1, NEK4, ITIH1, ITIH3, ITIH4, ITIH4-AS1, MUSTN1, TMEM110-MUSTN1, STIMATE, MIR8064, SFMBT1, RFT1, PRKCD, TKT, DCP1A, SNORD38C, CACNA1D, CHDH, IL17RB, ACTR8, SELENOK, CACNA2D3, ESRG, CACNA2D3-AS1, LRTM1, LINC02017, WNT5A, ERC2, ERC2-IT1, MIR3938, CCDC66, FAM208A, ARHGEF3, ARHGEF3-AS1, SPATA12, IL17RD, HESX1, APPL1, ASB14, LOC105377102, DNAH12, PDE12, ARF4, ARF4-AS1, DENND6A, DENND6A-DT, SLMAP, FLNB, FLNB-AS1, DNASE1L3, ABHD6, HTD2, RPP14, PXK, PDHB, KCTD6, ACOX2, FAM107A, FAM3D-AS1, FAM3D, C3orf67, C3orf67-AS1, LOC339902, FHIT	354	CHL1 (607416), CNTN6 (607220), CNTN4 (607280), IL5RA (147851), TRNT1 (612907), CRBN (609262), SETMAR (609834), SUMF1 (607939), ITPR1 (147265), EGOT (611662), BHLHE40 (604256), ARL8B (616596), EDEM1 (607673), GRM7 (604101), LMCD1 (604859), LINC00312 (610485), SSUH2 (617479), CAV3 (601253), OXTR (167055), RAD18 (605256), SRGAP3 (606525), SETD5 (615743), LHFPL4 (610240), MTMR14 (611089), BRPF1 (602410), OGG1 (601982), CAMK1 (604998), TADA3 (602945), ARPC4 (604226), RPUSD3 (617759), CIDEC (612120), JAGN1 (616012), IL17RE (614995), IL17RC (610925), CRELD1 (607170), FANCD2 (613984), BRK1 (611183), VHL (608537), IRAK2 (603304), GHRL (605353), SEC13 (600152), ATP2B2 (108733), SLC6A11 (607952), SLC6A1 (137165), HRH1 (600167), ATG7 (608760), TAMM41 (614948), SYN2 (600755), TIMP4 (601915), PPARG (601487), TSEN2 (608753), MKRN2 (608426), RAF1 (164760), CAND2 (610403), IQSEC1 (610166), NUP210 (607703), HDAC11 (607226), FBLN2 (135821), WNT7A (601570), TPRXL (611167), CHCHD4 (611077), TMEM43 (612048), XPC (613208), LSM3 (607283), SLC6A6 (186854), CCDC174 (616735), FGD5 (614788), NR2C2 (601426), MRPS25 (611987), RBSN (609511), COL6A4P1 (612397), CAPN7 (606400), SH3BP5 (605612), EAF1 (608315), COLQ (603033), HACL1 (604300), BTD (609019), ANKRD28 (611122), GALNT15 (615131), DPH3 (608959), DAZL (601486), PLCL2 (614276), TBC1D5 (615740), SATB1 (602075), KCNH8 (608260), RAB5A (179512), KAT2B (602303), SGO1 (609168), UBE2E2 (602163), UBE2E1 (602916), NKIRAS1 (604496), RPL15 (604174), NR1D2 (602304), THRB (190160), RARB (180220), TOP2B (126431), NGLY1 (610661), OXSM (610324), SLC4A7 (603353), EOMES (604615), CMC1 (615166), AZI2 (609916), RBMS3 (605786), TGFBR2 (190182), GADL1 (615601), STT3B (608605), OSBPL10 (606738), GPD1L (611778), CMTM8 (607891), CMTM7 (607890), CMTM6 (607889), DYNC1LI1 (615890), CCR4 (604836), GLB1 (611458), CRTAP (605497), FBXL2 (605652), UBP1 (609784), CLASP2 (605853), PDCD6IP (608074), ARPP21 (605488), MIR128-2 (611769), STAC (602317), DCLK3 (613167), EPM2AIP1 (607911), MLH1 (120436), LRRFIP2 (614043), GOLGA4 (602509), C3orf35 (611429), ITGA9 (603963), CTDSPL (608592), MIR26A1 (612151), PLCD1 (602142), DLEC1 (604050), ACAA1 (604054), MYD88 (602170), OXSR1 (604046), SLC22A13 (604047), SLC22A14 (604048), XYLB (604049), ACVR2B (602730), EXOG (604051), SCN5A (600163), SCN10A (604427), SCN11A (604385), WDR48 (612167), GORASP1 (606867), TTC21A (611430), CSRNP1 (606458), XIRP1 (609777), CX3CR1 (601470), CCR8 (601834), SLC25A38 (610819), RPSA (150370), SNORA62 (180646), MOBP (600948), MYRIP (611790), ENTPD3 (603161), RPL14 (617414), CTNNB1 (116806), ULK4 (617010), TRAK1 (608112), CCK (118440), LYZL4 (612750), VIPR1 (192321), SEC22C (604028), SS18L2 (606473), NKTR (161565), KLHL40 (615340), HHATL (608116), ACKR2 (602648), CYP8B1 (602172), POMGNT2 (614828), SNRK (612760), ANO10 (613726), ABHD5 (604780), MIR138-1 (613394), TOPAZ1 (614412), ZNF35 (194533), KIF15 (617569), TGM4 (600585), ZDHHC3 (617150), EXOSC7 (606488), CLEC3B (187520), CDCP1 (611735), LARS2 (604544), LIMD1 (604543), SACM1L (606569), SLC6A20 (605616), LZTFL1 (606568), CCR9 (604738), FYCO1 (607182), CXCR6 (605163), XCR1 (600552), CCR1 (601159), CCR3 (601268), CCR2 (601267), CCR5 (601373), CCRL2 (608379), LTF (150210), RTP3 (607181), LRRC2 (607180), TDGF1 (187395), ALS2CL (612402), TMIE (607237), PRSS50 (607950), MYL3 (160790), PTH1R (168468), NBEAL2 (614169), SETD2 (612778), KIF9 (607910), PTPN23 (606584), SCAP (601510), ELP6 (615020), CSPG5 (606775), SMARCC1 (601732), DHX30 (616423), MAP4 (157132), CDC25A (116947), CAMP (600474), ZNF589 (616702), NME6 (608294), FBXW12 (609075), PLXNB1 (601053), TMA7 (615808), ATRIP (606605), TREX1 (606609), SHISA5 (607290), PFKFB4 (605320), UCN2 (605902), COL7A1 (120120), UQCRC1 (191328), SLC26A6 (610068), CELSR3 (604264), NCKIPSD (606671), IP6K2 (606992), PRKAR2A (176910), SLC25A20 (613698), ARIH2 (605615), P4HTM (614584), WDR6 (606031), NDUFAF3 (612911), MIR191 (615150), IMPDH2 (146691), QRICH1 (617387), QARS (603727), USP19 (614471), LAMB2 (150325), KLHDC8B (613169), MIR4271 (617176), USP4 (603486), GPX1 (138320), RHOA (165390), TCTA (600690), AMT (238310), NICN1 (611516), DAG1 (128239), BSN (604020), APEH (102645), MST1 (142408), RNF123 (614472), AMIGO3 (615691), GMPPB (615320), IP6K1 (606991), UBA7 (191325), TRAIP (605958), CAMKV (614993), MST1R (600168), MON1A (611464), RBM6 (606886), RBM5 (606884), SEMA3F (601124), GNAT1 (139330), SLC38A3 (604437), GNAI2 (139360), SEMA3B (601281), IFRD2 (602725), HYAL3 (604038), NAA80 (607073), HYAL1 (607071), HYAL2 (603551), TUSC2 (607052), RASSF1 (605082), ZMYND10 (607070), NPRL2 (607072), CYB561D2 (607068), TMEM115 (607069), CACNA2D2 (607082), CISH (602441), MAPKAPK3 (602130), DOCK3 (603123), MANF (601916), RBM15B (612602), DCAF1 (617259), GRM2 (604099), PARP3 (607726), GPR62 (606917), PCBP4 (608503), ACY1 (104620), RPL29 (601832), DUSP7 (602749), POC1A (614783), ALAS1 (125290), TLR9 (605474), TWF2 (607433), PPM1M (608979), WDR82 (611059), MIRLET7G (612102), GLYCTK (610516), DNAH1 (603332), BAP1 (603089), TNNC1 (191040), NISCH (615507), STAB1 (608560), PBRM1 (606083), GNL3 (608011), SPCS1 (610358), NEK4 (601959), ITIH1 (147270), ITIH3 (146650), ITIH4 (600564), MUSTN1 (617195), STIMATE (617189), SFMBT1 (607319), RFT1 (611908), PRKCD (176977), TKT (606781), DCP1A (607010), CACNA1D (114206), IL17RB (605458), SELENOK (607916), CACNA2D3 (606399), ESRG (611473), WNT5A (164975), ERC2 (617250), FAM208A (616493), ARHGEF3 (612115), SPATA12 (609869), IL17RD (606807), HESX1 (601802), APPL1 (604299), DNAH12 (603340), PDE12 (616519), ARF4 (601177), SLMAP (602701), FLNB (603381), DNASE1L3 (602244), ABHD6 (616966), RPP14 (606112), PXK (611450), PDHB (179060), ACOX2 (601641), FAM107A (608295), FAM3D (608619), FHIT (601153)	CytoRegions Not Set				true	arr[hg19] 3p26.3p14.2(63,410-60,193,900) hmz	chr3:63410-60193900
LST.OSCHP		LOH	3	p12.2	48460.177	3269	317	LINC02050, LINC02027, GBE1, LINC02008, LINC00971, LINC02025, CADM2, SNORA95, MIR5688, CADM2-AS2, LINC02070, VGLL3, LINC00506, MIR4795, CHMP2B, POU1F1, HTR1F, CGGBP1, ZNF654, C3orf38, EPHA3, PROS1, ARL13B, STX19, DHFR2, NSUN3, MIR6730, LINC00879, MTHFD2P1, MIR8060, EPHA6, ARL6, CRYBG3, RIOX2, GABRR3, OR5AC2, OR5H1, OR5H14, OR5H15, OR5H6, OR5H2, OR5K4, OR5K3, OR5K1, OR5K2, CLDND1, GPR15, CPOX, ST3GAL6-AS1, ST3GAL6, DCBLD2, MIR548G, COL8A1, HP09053, CMSS1, FILIP1L, MIR3921, TMEM30CP, TBC1D23, NIT2, TOMM70, LNP1, TMEM45A, ADGRG7, TFG, ABI3BP, IMPG2, SENP7, FAM172BP, TRMT10C, PCNP, ZBTB11, ZBTB11-AS1, RPL24, PDCL3P4, CEP97, NXPE3, NFKBIZ, LINC02085, LOC101929411, ZPLD1, MIR548AB, MIR548A3, ALCAM, CBLB, LINC00882, DUBR, CCDC54, LOC101929579, LINC01990, BBX, LINC00635, LINC00636, CD47, LINC01215, IFT57, HHLA2, MYH15, CIP2A, DZIP3, RETNLB, TRAT1, GUCA1C, MORC1, MORC1-AS1, C3orf85, LINC00488, DPPA2, DPPA4, LINC01205, MIR4445, NECTIN3-AS1, NECTIN3, CD96, ZBED2, PLCXD2, PLCXD2-AS1, PHLDB2, ABHD10, TAGLN3, TMPRSS7, C3orf52, MIR567, GCSAM, SLC9C1, LOC105374042, CD200, BTLA, ATG3, SLC35A5, LINC01279, CCDC80, LINC02042, LOC100129297, CD200R1L, CD200R1, GTPBP8, NEPRO, LINC02044, BOC, CFAP44, CFAP44-AS1, MIR8076, SPICE1, SIDT1, MIR4446, USF3, NAA50, ATP6V1A, GRAMD1C, ZDHHC23, CCDC191, QTRT2, DRD3, ZNF80, TIGIT, ZBTB20, MIR568, ZBTB20-AS1, ZBTB20-AS5, MIR4796, ZBTB20-AS3, ZBTB20-AS4, GAP43, LSAMP, SNORD155, LSAMP-AS1, LINC00903, TUSC7, MIR4447, LINC00901, LINC02024, LOC105374060, LOC101926968, IGSF11, IGSF11-AS1, C3orf30, UPK1B, B4GALT4, B4GALT4-AS1, ARHGAP31, ARHGAP31-AS1, TMEM39A, POGLUT1, TIMMDC1, CD80, ADPRH, PLA1A, POPDC2, COX17, MAATS1, NR1I2, GSK3B, GPR156, LRRC58, FSTL1, MIR198, NDUFB4, HGD, RABL3, GTF2E1, LINC02049, STXBP5L, MIR5682, POLQ, ARGFX, FBXO40, HCLS1, GOLGB1, IQCB1, EAF2, SLC15A2, ILDR1, CD86, CASR, CSTA, CCDC58, FAM162A, WDR5B, LOC102723582, KPNA1, PARP9, DTX3L, PARP15, PARP14, HSPBAP1, DIRC2, LINC02035, SEMA5B, PDIA5, MIR7110, SEC22A, ADCY5, HACD2, MYLK-AS1, MYLK, MYLK-AS2, CCDC14, ROPN1, KALRN, MIR5002, MIR6083, UMPS, MIR544B, ITGB5, MUC13, HEG1, SLC12A8, MIR5092, ZNF148, SNX4, OSBPL11, LOC105374312, MIR548I1, LOC101927056, FAM86JP, ALG1L, ROPN1B, SLC41A3, ALDH1L1, ALDH1L1-AS1, ALDH1L1-AS2, KLF15, CCDC37-DT, CFAP100, ZXDC, UROC1, CHST13, C3orf22, TXNRD3NB, TXNRD3, NUP210P1, CHCHD6, PLXNA1, C3orf56, PRR20G, LINC02016, LINC01471, TPRA1, MIR6825, MIR7976, MCM2, PODXL2, ABTB1, MGLL, KBTBD12, SEC61A1, RUVBL1, RUVBL1-AS1, EEFSEC, DNAJB8, DNAJB8-AS1, GATA2, GATA2-AS1, LOC90246, LINC01565, RPN1, RAB7A, LOC653712, ACAD9, KIAA1257, EFCC1, GP9, RAB43, ISY1-RAB43, ISY1, CNBP, COPG1, MIR6826, HMCES, H1FX, H1FX-AS1, RPL32P3, SNORA7B, EFCAB12, MBD4, IFT122	168	GBE1 (607839), CADM2 (609938), VGLL3 (609980), CHMP2B (609512), POU1F1 (173110), HTR1F (182134), CGGBP1 (603363), EPHA3 (179611), PROS1 (176880), ARL13B (608922), DHFR2 (616588), NSUN3 (617491), EPHA6 (600066), ARL6 (608845), RIOX2 (612049), GPR15 (601166), CPOX (612732), ST3GAL6 (607156), DCBLD2 (608698), COL8A1 (120251), FILIP1L (612993), TMEM30CP (611030), TBC1D23 (617687), NIT2 (616769), TOMM70 (606081), TMEM45A (616928), ADGRG7 (612307), TFG (602498), ABI3BP (606279), IMPG2 (607056), SENP7 (612846), TRMT10C (615423), PCNP (615210), RPL24 (604180), CEP97 (615864), NFKBIZ (608004), ZPLD1 (615915), ALCAM (601662), CBLB (604491), DUBR (616619), CD47 (601028), IFT57 (606621), HHLA2 (604371), MYH15 (609929), CIP2A (610643), DZIP3 (608672), RETNLB (605645), TRAT1 (604962), GUCA1C (605128), MORC1 (603205), DPPA2 (614445), DPPA4 (614125), NECTIN3 (607147), CD96 (606037), ZBED2 (615246), PLCXD2 (617015), PHLDB2 (610298), TAGLN3 (607953), C3orf52 (611956), GCSAM (607792), SLC9C1 (612738), CD200 (155970), BTLA (607925), ATG3 (609606), CCDC80 (608298), CD200R1 (607546), NEPRO (617089), BOC (608708), CFAP44 (617559), SPICE1 (613447), SIDT1 (606816), USF3 (617568), NAA50 (610834), ATP6V1A (607027), ZDHHC23 (617334), DRD3 (126451), ZNF80 (194553), TIGIT (612859), ZBTB20 (606025), GAP43 (162060), LSAMP (603241), TUSC7 (616057), IGSF11 (608351), UPK1B (602380), B4GALT4 (604015), ARHGAP31 (610911), POGLUT1 (615618), TIMMDC1 (615534), CD80 (112203), ADPRH (603081), PLA1A (607460), POPDC2 (605823), COX17 (604813), MAATS1 (609910), NR1I2 (603065), GSK3B (605004), GPR156 (610464), FSTL1 (605547), NDUFB4 (603840), HGD (607474), GTF2E1 (189962), STXBP5L (609381), POLQ (604419), ARGFX (611164), FBXO40 (609107), HCLS1 (601306), GOLGB1 (602500), IQCB1 (609237), EAF2 (607659), SLC15A2 (602339), ILDR1 (609739), CD86 (601020), CASR (601199), CSTA (184600), FAM162A (608017), KPNA1 (600686), PARP9 (612065), DTX3L (613143), PARP15 (612066), PARP14 (610028), HSPBAP1 (608263), DIRC2 (602773), SEMA5B (609298), PDIA5 (616942), SEC22A (612442), ADCY5 (600293), HACD2 (615939), MYLK (600922), CCDC14 (617147), ROPN1 (611757), KALRN (604605), UMPS (613891), ITGB5 (147561), MUC13 (612181), HEG1 (614182), SLC12A8 (611316), ZNF148 (601897), SNX4 (605931), OSBPL11 (606739), SLC41A3 (610803), ALDH1L1 (600249), KLF15 (606465), ZXDC (615746), UROC1 (613012), CHST13 (610124), TXNRD3 (606235), CHCHD6 (615634), PLXNA1 (601055), TPRA1 (608336), MCM2 (116945), PODXL2 (616627), ABTB1 (608308), MGLL (609699), SEC61A1 (609213), RUVBL1 (603449), EEFSEC (607695), DNAJB8 (611337), GATA2 (137295), RPN1 (180470), RAB7A (602298), ACAD9 (611103), GP9 (173515), ISY1 (612764), CNBP (116955), COPG1 (615525), H1FX (602785), MBD4 (603574), IFT122 (606045)	CytoRegions Not Set				true	arr[hg19] 3p12.2q21.3(80,735,486-129,195,663) hmz	chr3:80735486-129195663
LST.OSCHP		LOH	17	q11.1	1609.668	121	31	LOC105371703, MIR4522, WSB1, TBC1D3P5, KSR1, LGALS9, NOS2, LYRM9, LINC01992, NLK, PYY2, PPY2P, KRT18P55, TMEM97, IFT20, TNFAIP1, POLDIP2, TMEM199, MIR4723, SEBOX, VTN, SARM1, SLC46A1, SLC13A2, FOXN1, UNC119, PIGS, ALDOC, SPAG5, SPAG5-AS1, SGK494	22	WSB1 (610091), KSR1 (601132), LGALS9 (601879), NOS2 (163730), NLK (609476), PYY2 (606637), PPY2P (606638), TMEM97 (612912), IFT20 (614394), TNFAIP1 (191161), POLDIP2 (611519), TMEM199 (616815), SEBOX (610975), VTN (193190), SARM1 (607732), SLC46A1 (611672), SLC13A2 (604148), FOXN1 (600838), UNC119 (604011), PIGS (610271), ALDOC (103870), SPAG5 (615562)	CytoRegions Not Set				true	arr[hg19] 17q11.1q11.2(25,326,940-26,936,608) hmz	chr17:25326940-26936608
LST.OSCHP		LOH	2	q31.1	65734.271	4859	557	MIR1246, LINC01116, LINC01117, HNRNPA3, MIR4444-2, MIR4444-1, NFE2L2, MIR3128, LOC100130691, MIR6512, AGPS, TTC30B, TTC30A, PDE11A, LOC105373764, RBM45, OSBPL6, MIR548N, LOC101927027, PRKRA, PJVK, FKBP7, PLEKHA3, TTN-AS1, TTN, LOC101927055, CCDC141, SESTD1, ZNF385B, MIR1258, CWC22, SCHLAP1, UBE2E3, LINC01934, MIR4437, ITGA4, CERKL, NEUROD1, ITPRID2, PPP1R1C, PDE1A, DNAJC10, FRZB, NCKAP1, DUSP19, NUP35, MIR548AE1, ZNF804A, LOC105373782, LOC101927196, FSIP2, FSIP2-AS1, LINC01473, ZC3H15, ITGAV, FAM171B, ZSWIM2, CALCRL, TFPI, LINC01090, GULP1, MIR561, DIRC1, COL3A1, MIR1245A, MIR1245B, MIR3606, COL5A2, MIR3129, WDR75, SLC40A1, ASDURF, ASNSD1, ANKAR, OSGEPL1, OSGEPL1-AS1, ORMDL1, PMS1, MSTN, C2orf88, HIBCH, INPP1, MFSD6, NEMP2, NAB1, GLS, STAT1, LOC105373805, STAT4, MYO1B, NABP1, LOC105747689, CAVIN2, TMEFF2, PCGEM1, LINC01821, LINC01790, SLC39A10, DNAH7, STK17B, HECW2, LOC101927482, CCDC150, LOC100130452, GTF3C3, C2orf66, PGAP1, ANKRD44, LOC101927596, ANKRD44-IT1, SF3B1, COQ10B, HSPD1, SNORA105B, SNORA105A, HSPE1, HSPE1-MOB4, MOB4, RFTN2, MARS2, BOLL, PLCL1, LINC01923, SATB2, SATB2-AS1, LINC01877, FTCDNL1, C2orf69, TYW5, MAIP1, SPATS2L, KCTD18, SGO2, AOX1, AOX3P-AOX2P, LINC01792, LOC101927795, BZW1, CLK1, PPIL3, NIF3L1, ORC2, FAM126B, NDUFB3, CFLAR, CFLAR-AS1, CASP10, CASP8, ALS2CR12, TRAK2, STRADB, C2CD6, TMEM237, MPP4, ALS2, CDK15, FZD7, KIAA2012, LOC729224, SUMO1, NOP58, SNORD70, SNORD70B, SNORD11B, SNORD11, BMPR2, FAM117B, ICA1L, WDR12, CARF, NBEAL1, CYP20A1, ABI2, RAPH1, CD28, CTLA4, ICOS, PARD3B, NRP2, INO80D, GCSHP3, NDUFS1, EEF1B2, SNORD51, SNORA41, GPR1, GPR1-AS, ZDBF2, ADAM23, FAM237A, DYTN, MDH1B, FASTKD2, MIR3130-1, MIR3130-2, CPO, KLF7, MIR2355, MIR7845, LOC101927865, MYOSLID, LINC01802, MIR1302-4, CREB1, METTL21A, LINC01857, CCNYL1, MIR4775, FZD5, PLEKHM3, LOC100507443, CRYGD, CRYGC, CRYGB, CRYGA, C2orf80, IDH1, IDH1-AS1, PIKFYVE, PTH2R, LOC101927960, MAP2, UNC80, RPE, KANSL1L, LOC101928020, ACADL, MYL1, LANCL1-AS1, LANCL1, CPS1, CPS1-IT1, ERBB4, MIR548F2, LINC01878, MIR4776-1, MIR4776-2, IKZF2, LINC01953, LOC100130451, SPAG16, MIR4438, VWC2L, VWC2L-IT1, BARD1, LOC101928103, SNORA70I, ABCA12, ATIC, FN1, LOC102724849, LINC00607, LINC01614, MREG, PECR, TMEM169, XRCC5, LINC01963, MARCH4, SMARCAL1, RPL37A, LINC01280, IGFBP2, IGFBP5, TNP1, LOC105373876, LINC01921, DIRC3-AS1, DIRC3, TNS1, SNORA115, MIR6809, LOC105373878, RUFY4, CXCR2P1, CXCR2, CXCR1, ARPC2, GPBAR1, AAMP, PNKD, TMBIM1, MIR6513, CATIP-AS2, MIR6810, CATIP, CATIP-AS1, SLC11A1, CTDSP1, MIR26B, VIL1, USP37, CNOT9, PLCD4, ZNF142, BCS1L, RNF25, STK36, TTLL4, CYP27A1, PRKAG3, MIR9500, WNT6, WNT10A, LINC01494, CDK5R2, LINC00608, FEV, CRYBA2, MIR375, LOC100129175, CFAP65, IHH, MIR3131, NHEJ1, SLC23A3, CNPPD1, RETREG2, ZFAND2B, ABCB6, ATG9A, ANKZF1, GLB1L, STK16, TUBA4A, TUBA4B, DNAJB2, PTPRN, MIR153-1, RESP18, DNPEP, DES, SPEG, LOC100996693, GMPPA, ASIC4, CHPF, TMEM198, MIR3132, OBSL1, INHA, STK11IP, SLC4A3, LINC01803, MIR4268, EPHA4, PAX3, CCDC140, LOC440934, SGPP2, FARSB, MOGAT1, ACSL3, KCNE4, SCG2, AP1S3, WDFY1, MRPL44, SERPINE2, FAM124B, CUL3, DOCK10, MIR4439, NYAP2, LOC646736, MIR5702, IRS1, RHBDD1, COL4A4, COL4A3, LOC654841, MFF, TM4SF20, MIR5703, AGFG1, C2orf83, LOC729968, SLC19A3, CCL20, DAW1, SPHKAP, LINC01807, PID1, DNER, TRIP12, FBXO36, SLC16A14, SP110, SP140, SP140L, SP100, LINC01907, CAB39, ITM2C, LOC151484, GPR55, SPATA3-AS1, SPATA3, C2orf72, PSMD1, HTR2B, ARMC9, MIR4777, B3GNT7, NCL, SNORA75, SNORD20, SNORD82, LINC00471, NMUR1, TEX44, PTMA, MIR1244-1, MIR1244-3, MIR1244-2, MIR1244-4, PDE6D, COPS7B, MIR1471, NPPC, DIS3L2, ALPP, ECEL1P2, ALPG, ALPI, ECEL1, PRSS56, CHRND, CHRNG, TIGD1, MIR5001, EIF4E2, EFHD1, GIGYF2, KCNJ13, SNORC, NGEF, LOC101928881, NEU2, INPP5D, ATG16L1, SCARNA5, SCARNA6, SAG, DGKD, USP40, UGT1A8, UGT1A10, UGT1A9, UGT1A7, UGT1A6, UGT1A5, UGT1A4, UGT1A3, DNAJB3, LOC100286922, UGT1A1, MROH2A, HJURP, MSL3P1, TRPM8, SPP2, LINC01891, ARL4C, LINC01173, SH3BP4, AGAP1, AGAP1-IT1, TNRC17, GBX2, ASB18, IQCA1, ACKR3, LOC93463, COPS8, COL6A3, MLPH, MIR6811, PRLH, RAB17, LRRFIP1, RBM44, RAMP1, UBE2F, UBE2F-SCLY, SCLY, ESPNL, KLHL30, ERFE, ILKAP, LOC151174, LOC643387, HES6, PER2, TRAF3IP1, ASB1, LINC01107, TWIST2, LINC01940, HDAC4, MIR4440, MIR4441, MGC16025, MIR4269, MIR2467, LOC101928111, LOC150935, NDUFA10, MIR4786, OR6B2, OR6B3, COPS9, OTOS, GPC1, LOC100130449, MIR149, ANKMY1, DUSP28, RNPEPL1, CAPN10-DT, CAPN10, GPR35, AQP12B, LOC285191, AQP12A, KIF1A, AGXT, C2orf54, CROCC2, LOC200772, SNED1, MTERF4, PASK, PPP1R7, ANO7, HDLBP, SEPT2, FARP2, MIR3133, STK25, BOK-AS1, BOK, THAP4, ATG4B, DTYMK, ING5, D2HGDH, GAL3ST2, NEU4, PDCD1, RTP5, LINC01237, LOC285095, LINC01238, LOC285097, LINC01880, LINC01881	325	HNRNPA3 (605372), NFE2L2 (600492), AGPS (603051), PDE11A (604961), RBM45 (608888), OSBPL6 (606734), PRKRA (603424), PJVK (610219), FKBP7 (607062), PLEKHA3 (607774), TTN (188840), CCDC141 (616031), ZNF385B (612344), MIR1258 (614488), CWC22 (615186), SCHLAP1 (615568), UBE2E3 (604151), ITGA4 (192975), CERKL (608381), NEUROD1 (601724), ITPRID2 (118990), PPP1R1C (613240), PDE1A (171890), DNAJC10 (607987), FRZB (605083), NCKAP1 (604891), DUSP19 (611437), NUP35 (608140), ZNF804A (612282), FSIP2 (615796), ITGAV (193210), CALCRL (114190), TFPI (152310), GULP1 (608165), DIRC1 (606423), COL3A1 (120180), COL5A2 (120190), SLC40A1 (604653), ANKAR (609803), ORMDL1 (610073), PMS1 (600258), MSTN (601788), C2orf88 (615117), HIBCH (610690), INPP1 (147263), MFSD6 (613476), NEMP2 (616497), NAB1 (600800), GLS (138280), STAT1 (600555), STAT4 (600558), MYO1B (606537), NABP1 (612103), CAVIN2 (606728), TMEFF2 (605734), PCGEM1 (605443), SLC39A10 (608733), DNAH7 (610061), STK17B (604727), HECW2 (617245), GTF3C3 (604888), PGAP1 (611655), SF3B1 (605590), HSPD1 (118190), HSPE1 (600141), MOB4 (609361), MARS2 (609728), BOLL (606165), PLCL1 (600597), SATB2 (608148), FTCDNL1 (614308), MAIP1 (617267), SPATS2L (613817), SGO2 (612425), AOX1 (602841), CLK1 (601951), PPIL3 (615811), NIF3L1 (605778), ORC2 (601182), NDUFB3 (603839), CFLAR (603599), CASP10 (601762), CASP8 (601763), TRAK2 (607334), STRADB (607333), TMEM237 (614423), MPP4 (606575), ALS2 (606352), CDK15 (616147), FZD7 (603410), SUMO1 (601912), NOP58 (616742), BMPR2 (600799), WDR12 (616620), CARF (607586), NBEAL1 (609816), ABI2 (606442), RAPH1 (609035), CD28 (186760), CTLA4 (123890), ICOS (604558), NRP2 (602070), NDUFS1 (157655), EEF1B2 (600655), GPR1 (600239), GPR1-AS (617636), ZDBF2 (617059), ADAM23 (603710), FASTKD2 (612322), CPO (609563), KLF7 (604865), CREB1 (123810), METTL21A (615257), FZD5 (601723), CRYGD (123690), CRYGC (123680), CRYGB (123670), CRYGA (123660), C2orf80 (615536), IDH1 (147700), PIKFYVE (609414), PTH2R (601469), MAP2 (157130), UNC80 (612636), RPE (180480), KANSL1L (613833), ACADL (609576), MYL1 (160780), LANCL1 (604155), CPS1 (608307), ERBB4 (600543), IKZF2 (606234), SPAG16 (612173), BARD1 (601593), ABCA12 (607800), ATIC (601731), FN1 (135600), MREG (609207), PECR (605843), XRCC5 (194364), MARCH4 (608208), SMARCAL1 (606622), RPL37A (613314), IGFBP2 (146731), IGFBP5 (146734), TNP1 (190231), DIRC3 (608262), TNS1 (600076), CXCR2 (146928), CXCR1 (146929), ARPC2 (604224), GPBAR1 (610147), AAMP (603488), PNKD (609023), TMBIM1 (610364), SLC11A1 (600266), CTDSP1 (605323), MIR26B (612152), VIL1 (193040), CNOT9 (612054), PLCD4 (605939), ZNF142 (604083), BCS1L (603647), RNF25 (616014), STK36 (607652), CYP27A1 (606530), PRKAG3 (604976), WNT6 (604663), WNT10A (606268), CDK5R2 (603764), FEV (607150), CRYBA2 (600836), MIR375 (611173), CFAP65 (614270), IHH (600726), NHEJ1 (611290), ZFAND2B (613474), ABCB6 (605452), ATG9A (612204), ANKZF1 (617541), STK16 (604719), TUBA4A (191110), DNAJB2 (604139), PTPRN (601773), RESP18 (612721), DNPEP (611367), DES (125660), SPEG (615950), GMPPA (615495), ASIC4 (606715), CHPF (610405), OBSL1 (610991), INHA (147380), STK11IP (607172), SLC4A3 (106195), EPHA4 (602188), PAX3 (606597), SGPP2 (612827), FARSB (609690), MOGAT1 (610268), ACSL3 (602371), KCNE4 (607775), SCG2 (118930), AP1S3 (615781), MRPL44 (611849), SERPINE2 (177010), CUL3 (603136), DOCK10 (611518), NYAP2 (615478), IRS1 (147545), RHBDD1 (617515), COL4A4 (120131), COL4A3 (120070), MFF (614785), TM4SF20 (615404), AGFG1 (600862), SLC19A3 (606152), CCL20 (601960), SPHKAP (611646), PID1 (612930), DNER (607299), TRIP12 (604506), FBXO36 (609105), SP110 (604457), SP140 (608602), SP140L (617747), SP100 (604585), CAB39 (612174), ITM2C (609554), GPR55 (604107), PSMD1 (617842), HTR2B (601122), ARMC9 (617612), B3GNT7 (615313), NCL (164035), SNORD20 (604012), SNORD82 (611133), NMUR1 (604153), PTMA (188390), PDE6D (602676), COPS7B (616010), NPPC (600296), DIS3L2 (614184), ALPP (171800), ALPG (171810), ALPI (171740), ECEL1 (605896), PRSS56 (613858), CHRND (100720), CHRNG (100730), TIGD1 (612972), EIF4E2 (605895), EFHD1 (611617), GIGYF2 (612003), KCNJ13 (603208), NGEF (605991), NEU2 (605528), INPP5D (601582), ATG16L1 (610767), SCARNA5 (615640), SCARNA6 (615641), SAG (181031), DGKD (601826), USP40 (610570), UGT1A8 (606433), UGT1A10 (606435), UGT1A9 (606434), UGT1A7 (606432), UGT1A6 (606431), UGT1A5 (606430), UGT1A4 (606429), UGT1A3 (606428), UGT1A1 (191740), HJURP (612667), TRPM8 (606678), SPP2 (602637), ARL4C (604787), SH3BP4 (605611), AGAP1 (608651), GBX2 (601135), ACKR3 (610376), COPS8 (616011), COL6A3 (120250), MLPH (606526), PRLH (602663), RAB17 (602206), LRRFIP1 (603256), RAMP1 (605153), UBE2F (617700), SCLY (611056), ERFE (615099), HES6 (610331), PER2 (603426), TRAF3IP1 (607380), ASB1 (605758), TWIST2 (607556), HDAC4 (605314), NDUFA10 (603835), OTOS (607877), GPC1 (600395), MIR149 (615209), RNPEPL1 (605287), CAPN10 (605286), GPR35 (602646), AQP12A (609789), KIF1A (601255), AGXT (604285), SNED1 (616634), MTERF4 (615393), PASK (607505), PPP1R7 (602877), ANO7 (605096), HDLBP (142695), SEPT2 (601506), FARP2 (617586), STK25 (602255), BOK (605404), THAP4 (612533), ATG4B (611338), DTYMK (188345), ING5 (608525), D2HGDH (609186), GAL3ST2 (608237), NEU4 (608527), PDCD1 (600244)	CytoRegions Not Set				true	arr[hg19] 2q31.1q37.3(177,318,060-243,052,331) hmz	chr2:177318060-243052331
LST.OSCHP		LOH	6	p22.3	2565.723	207	9	MIR548A1HG, MIR548A1, LOC101928519, LOC105374960, LOC100506885, ID4, MBOAT1, E2F3, CDKAL1	4	ID4 (600581), MBOAT1 (611732), E2F3 (600427), CDKAL1 (611259)	CytoRegions Not Set				false	arr[hg19] 6p22.3(18,505,439-21,071,162) hmz	chr6:18505439-21071162
LST.OSCHP		LOH	3	q26.31	22407.724	1856	248	NAALADL2, NAALADL2-AS1, MIR7977, LINC01208, LINC01209, TBL1XR1, LINC00501, LINC00578, LINC02015, LINC01014, KCNMB2-AS1, KCNMB2, ZMAT3, LOC101928739, PIK3CA, KCNMB3, ZNF639, MFN1, GNB4, ACTL6A, MRPL47, NDUFB5, USP13, PEX5L, PEX5L-AS2, LINC02053, TTC14, CCDC39, LOC101928882, FXR1, DNAJC19, SOX2-OT, RNU6-2, LOC102724604, SOX2, LINC01206, LINC01994, LINC01995, ATP11B, DCUN1D1, MCCC1, LAMP3, MCF2L2, B3GNT5, LINC00888, SNORA63D, SNORA63E, KLHL6, KLHL6-AS1, KLHL24, YEATS2, YEATS2-AS1, MAP6D1, PARL, ABCC5, ABCC5-AS1, HTR3D, HTR3C, HTR3E-AS1, HTR3E, EIF2B5, DVL3, AP2M1, ABCF3, VWA5B2, MIR1224, ALG3, EEF1AKMT4, EEF1AKMT4-ECE2, CAMK2N2, ECE2, PSMD2, EIF4G1, SNORD66, FAM131A, CLCN2, POLR2H, THPO, CHRD, LINC02054, LINC01840, EPHB3, MAGEF1, LINC02069, VPS8, C3orf70, EHHADH-AS1, EHHADH, MIR5588, MAP3K13, TMEM41A, LIPH, SENP2, IGF2BP2, IGF2BP2-AS1, MIR548AQ, TRA2B, NMRAL2P, ETV5, DGKG, LINC02020, LINC02052, CRYGS, TBCCD1, DNAJB11, AHSG, FETUB, HRG, KNG1, EIF4A2, SNORD2, SNORA63B, MIR1248, SNORA81, SNORA63, SNORA4, RFC4, LINC02043, ADIPOQ, ADIPOQ-AS1, ST6GAL1, RPL39L, LOC101929106, RTP1, MASP1, LOC101929130, RTP4, LINC02041, SST, RTP2, LOC100131635, BCL6, LINC01991, LPP-AS2, LPP, FLJ42393, LPP-AS1, MIR28, TPRG1-AS1, TPRG1, TPRG1-AS2, TP63, MIR944, P3H2, P3H2-AS1, CLDN1, CLDN16, TMEM207, IL1RAP, GMNC, SNAR-I, OSTN, OSTN-AS1, UTS2B, CCDC50, LINCR-0002, PYDC2, FGF12, FGF12-AS1, FGF12-AS2, MB21D2, HRASLS, MGC2889, ATP13A5, ATP13A5-AS1, ATP13A4, ATP13A4-AS1, OPA1, OPA1-AS1, LINC02038, LINC02026, DPPA2P3, LINC02028, HES1, LINC02036, LINC02037, LINC00887, CPN2, LRRC15, GP5, ATP13A3, LINC00884, TMEM44-AS1, TMEM44, LSG1, FAM43A, LINC01968, LINC01972, XXYLT1, XXYLT1-AS1, MIR3137, XXYLT1-AS2, ACAP2, PPP1R2, APOD, LOC105374297, SDHAP2, MIR570HG, MIR570, MUC20, MUC4, LINC01983, TNK2, MIR6829, TNK2-AS1, SDHAP1, TFRC, LINC00885, ZDHHC19, SLC51A, PCYT1A, TCTEX1D2, TM4SF19-TCTEX1D2, TM4SF19-AS1, TM4SF19, UBXN7, UBXN7-AS1, RNF168, SMCO1, WDR53, FBXO45, LINC01063, NRROS, CEP19, PIGX, PAK2, SENP5, NCBP2, NCBP2-AS1, NCBP2-AS2, PIGZ, MELTF, MELTF-AS1, DLG1, MIR4797, DLG1-AS1, LINC02012, BDH1, LOC220729, RUBCN, MIR922, FYTTD1, LRCH3, IQCG, RPL35A, LMLN, LMLN-AS1, ANKRD18DP	126	NAALADL2 (608806), TBL1XR1 (608628), KCNMB2 (605214), ZMAT3 (606452), PIK3CA (171834), KCNMB3 (605222), MFN1 (608506), GNB4 (610863), ACTL6A (604958), MRPL47 (611852), NDUFB5 (603841), USP13 (603591), PEX5L (611058), CCDC39 (613798), FXR1 (600819), DNAJC19 (608977), SOX2-OT (616338), SOX2 (184429), ATP11B (605869), DCUN1D1 (605905), MCCC1 (609010), LAMP3 (605883), B3GNT5 (615333), KLHL6 (614214), KLHL24 (611295), YEATS2 (613373), MAP6D1 (610593), PARL (607858), ABCC5 (605251), HTR3D (610122), HTR3C (610121), HTR3E (610123), EIF2B5 (603945), DVL3 (601368), AP2M1 (601024), MIR1224 (611620), ALG3 (608750), CAMK2N2 (608721), ECE2 (610145), PSMD2 (606223), EIF4G1 (600495), CLCN2 (600570), POLR2H (606023), THPO (600044), CHRD (603475), EPHB3 (601839), MAGEF1 (609267), EHHADH (607037), MAP3K13 (604915), LIPH (607365), SENP2 (608261), IGF2BP2 (608289), TRA2B (602719), ETV5 (601600), DGKG (601854), CRYGS (123730), DNAJB11 (611341), AHSG (138680), FETUB (605954), HRG (142640), KNG1 (612358), EIF4A2 (601102), SNORA81 (611334), SNORA63 (180647), RFC4 (102577), ADIPOQ (605441), ST6GAL1 (109675), RPL39L (607547), RTP1 (609137), MASP1 (600521), RTP4 (609350), SST (182450), RTP2 (609138), BCL6 (109565), LPP (600700), MIR28 (612154), TP63 (603273), P3H2 (610341), CLDN1 (603718), CLDN16 (603959), TMEM207 (614786), IL1RAP (602626), GMNC (614448), OSTN (610280), CCDC50 (611051), PYDC2 (615701), FGF12 (601513), HRASLS (606487), ATP13A4 (609556), OPA1 (605290), HES1 (139605), CPN2 (603104), GP5 (173511), ATP13A3 (610232), LSG1 (610780), XXYLT1 (614552), ACAP2 (607766), PPP1R2 (601792), APOD (107740), MIR570 (614538), MUC20 (610360), MUC4 (158372), TNK2 (606994), TFRC (190010), SLC51A (612084), PCYT1A (123695), TCTEX1D2 (617353), UBXN7 (616379), RNF168 (612688), WDR53 (615110), FBXO45 (609112), NRROS (615322), CEP19 (615586), PIGX (610276), PAK2 (605022), SENP5 (612845), NCBP2 (605133), PIGZ (611671), MELTF (155750), DLG1 (601014), BDH1 (603063), RUBCN (613516), FYTTD1 (616933), IQCG (612477), RPL35A (180468), LMLN (609380)	CytoRegions Not Set			CLEMENTS:Sophie	true	arr[hg19] 3q26.31q29(175,444,840-197,852,564) hmz	chr3:175444840-197852564
LST.OSCHP		LOH	10	q23.1	9262.285	997	72	NRG3, NRG3-AS1, LOC105378397, GHITM, CERNA2, C10orf99, CDHR1, LRIT2, LRIT1, RGR, LINC00858, CCSER2, LINC01519, LOC101929646, LOC101929662, LINC01520, GRID1-AS1, GRID1, MIR346, WAPL, OPN4, LDB3, BMPR1A, MMRN2, SNCG, ADIRF, AGAP11, FAM25A, GLUD1, SHLD2, NUTM2A, NUTM2A-AS1, LINC00863, NUTM2D, LINC00864, MIR4678, MINPP1, PAPSS2, ATAD1, CFL1P1, KLLN, PTEN, RNLS, LIPJ, LIPF, LIPK, LIPN, LIPM, ANKRD22, STAMBPL1, ACTA2-AS1, ACTA2, FAS, FAS-AS1, MIR4679-2, MIR4679-1, CH25H, LIPA, IFIT2, IFIT3, IFIT1B, IFIT1, IFIT5, SLC16A12, SLC16A12-AS1, PANK1, MIR107, FLJ37201, KIF20B, LINC00865, LINC01374, LINC01375	39	NRG3 (605533), CERNA2 (617434), C10orf99 (617775), CDHR1 (609502), LRIT1 (616103), RGR (600342), GRID1 (610659), MIR346 (611190), WAPL (610754), OPN4 (606665), LDB3 (605906), BMPR1A (601299), MMRN2 (608925), SNCG (602998), GLUD1 (138130), MINPP1 (605391), PAPSS2 (603005), ATAD1 (614452), KLLN (612105), PTEN (601728), RNLS (609360), LIPJ (613921), LIPF (601980), LIPK (613922), LIPN (613924), LIPM (613923), STAMBPL1 (612352), ACTA2 (102620), FAS (134637), CH25H (604551), LIPA (613497), IFIT2 (147040), IFIT3 (604650), IFIT1 (147690), IFIT5 (616135), SLC16A12 (611910), PANK1 (606160), MIR107 (613189), KIF20B (605498)	CytoRegions Not Set				false	arr[hg19] 10q23.1q23.31(82,843,903-92,106,188) hmz	chr10:82843903-92106188
LST.OSCHP		LOH	X	p22.2	14728.252	1060	87	PIR-FIGF, PIR, BMX, ACE2, GS1-594A7.3, CLTRN, CA5BP1, CA5B, INE2, ZRSR2, AP1S2, GRPR, MAGEB17, CTPS2, MIR548AM, S100G, SYAP1, TXLNG, RBBP7, REPS2, NHS, MIR4768, LOC101928389, NHS-AS1, SCML1, RAI2, LINC01456, BEND2, SCML2, CDKL5, RS1, PPEF1-AS1, PPEF1, PHKA2-AS1, PHKA2, ADGRG2, PDHA1, MAP3K15, SH3KBP1, BCLAF3, LOC729609, MAP7D2, MIR23C, EIF1AX, SCARNA9L, EIF1AX-AS1, RPS6KA3, CNKSR2, KLHL34, SMPX, MBTPS2, YY2, SMS, PHEX, PHEX-AS1, PTCHD1-AS, CBLL2, DDX53, PTCHD1, PRDX4, ACOT9, SAT1, APOO, CXorf58, KLHL15, EIF2S3, ZFX-AS1, ZFX, SUPT20HL2, SUPT20HL1, PDK3, PCYT1B, PCYT1B-AS1, POLA1, SCARNA23, ARX, MAGEB18, MAGEB6, MAGEB5, VENTXP1, PPP4R3C, DCAF8L2, MAGEB10, DCAF8L1, MIR6134, IL1RAPL1, MIR4666B	51	PIR (300931), BMX (300101), ACE2 (300335), CLTRN (300631), CA5B (300230), INE2 (300165), ZRSR2 (300028), AP1S2 (300629), GRPR (305670), MAGEB17 (300763), CTPS2 (300380), S100G (302020), TXLNG (300677), RBBP7 (300825), REPS2 (300317), NHS (300457), SCML1 (300227), RAI2 (300217), SCML2 (300208), CDKL5 (300203), RS1 (300839), PPEF1 (300109), PHKA2 (300798), ADGRG2 (300572), PDHA1 (300502), MAP3K15 (300820), SH3KBP1 (300374), EIF1AX (300186), RPS6KA3 (300075), CNKSR2 (300724), SMPX (300226), MBTPS2 (300294), YY2 (300570), SMS (300105), PHEX (300550), PTCHD1 (300828), PRDX4 (300927), ACOT9 (300862), SAT1 (313020), APOO (300753), KLHL15 (300980), EIF2S3 (300161), ZFX (314980), PDK3 (300906), PCYT1B (300948), POLA1 (312040), ARX (300382), MAGEB6 (300467), MAGEB5 (300466), MAGEB10 (300761), IL1RAPL1 (300206)	CytoRegions Not Set				true	arr[hg19] Xp22.2p21.2(15,427,175-30,155,427) hmz	chrX:15427175-30155427
LST.OSCHP		LOH	19	p13.3	24297.089	2106	710	PLPP2, MIER2, THEG, C2CD4C, SHC2, ODF3L2, MADCAM1, TPGS1, CDC34, GZMM, BSG, HCN2, POLRMT, FGF22, RNF126, FSTL3, PRSS57, PALM, MISP, PTBP1, MIR4745, PLPPR3, MIR3187, AZU1, PRTN3, ELANE, CFD, MED16, RNU6-2, R3HDM4, KISS1R, ARID3A, WDR18, GRIN3B, TMEM259, CNN2, ABCA7, ARHGAP45, POLR2E, GPX4, SBNO2, STK11, CBARP, ATP5F1D, MIDN, CIRBP-AS1, CIRBP, C19orf24, EFNA2, MUM1, NDUFS7, GAMT, DAZAP1, RPS15, APC2, C19orf25, PCSK4, REEP6, ADAMTSL5, PLK5, MEX3D, MBD3, UQCR11, TCF3, ONECUT3, ATP8B3, REXO1, MIR1909, LOC100288123, KLF16, ABHD17A, ADAT3, SCAMP4, CSNK1G2, CSNK1G2-AS1, BTBD2, MKNK2, MOB3A, IZUMO4, AP3D1, DOT1L, PLEKHJ1, MIR1227, MIR6789, SF3A2, AMH, MIR4321, JSRP1, OAZ1, PEAK3, LINGO3, LSM7, SPPL2B, TMPRSS9, TIMM13, LMNB2, MIR7108, LINC01775, GADD45B, GNG7, MIR7850, DIRAS1, SLC39A3, SGTA, THOP1, ZNF554, ZNF555, ZNF556, ZNF57, ZNF77, TLE6, TLE2, AES, GNA11, GNA15, LOC100996351, S1PR4, NCLN, CELF5, NFIC, SMIM24, DOHH, FZR1, C19orf71, MFSD12, HMG20B, GIPC3, TBXA2R, CACTIN-AS1, CACTIN, PIP5K1C, TJP3, MIR1268A, APBA3, MRPL54, RAX2, MATK, ZFR2, ATCAY, NMRK2, DAPK3, MIR637, EEF2, SNORD37, PIAS4, ZBTB7A, MAP2K2, CREB3L3, SIRT6, ANKRD24, EBI3, YJU2, SHD, TMIGD2, FSD1, STAP2, MPND, SH3GL1, CHAF1A, UBXN6, MIR4746, HDGFL2, PLIN4, PLIN5, LRG1, SEMA6B, TNFAIP8L1, MYDGF, DPP9, DPP9-AS1, MIR7-3HG, MIR7-3, FEM1A, TICAM1, PLIN3, ARRDC5, UHRF1, MIR4747, KDM4B, PTPRS, ZNRF4, TINCR, SAFB2, SAFB, C19orf70, HSD11B1L, RPL36, LONP1, CATSPERD, PRR22, DUS3L, NRTN, FUT6, FUT3, LOC101928844, FUT5, NDUFA11, VMAC, CAPS, RANBP3, LOC100128568, RFX2, ACSBG2, MLLT1, ACER1, CLPP, ALKBH7, PSPN, GTF2F1, MIR6885, MIR6790, LOC390877, KHSRP, MIR3940, SLC25A41, SLC25A23, CRB3, DENND1C, TUBB4A, TNFSF9, CD70, TNFSF14, C3, GPR108, MIR6791, TRIP10, SH2D3A, VAV1, ADGRE1, ADGRE4P, FLJ25758, MBD3L5, MBD3L4, MBD3L2, MBD3L3, ZNF557, INSR, ARHGEF18, LOC100128573, PEX11G, TEX45, ZNF358, MCOLN1, PNPLA6, CAMSAP3, MIR6792, XAB2, PET100, PCP2, STXBP2, RETN, MCEMP1, TRAPPC5, FCER2, CLEC4G, CD209, CLEC4M, CLEC4GP1, EVI5L, PRR36, LYPLA2P2, LRRC8E, MAP2K7, TGFBR3L, SNAPC2, CTXN1, TIMM44, ELAVL1, CCL25, FBN3, CERS4, CD320, NDUFA7, RPS28, KANK3, ANGPTL4, RAB11B-AS1, MIR4999, RAB11B, MARCH2, HNRNPM, PRAM1, ZNF414, MYO1F, ADAMTS10, ACTL9, OR2Z1, ZNF558, MBD3L1, MUC16, OR1M1, OR7G2, OR7G1, OR7G3, ZNF317, OR7D2, OR7D4, OR7E24, ZNF699, ZNF559, ZNF559-ZNF177, ZNF177, ZNF266, ZNF560, ZNF426, ZNF426-DT, ZNF121, ZNF561, ZNF561-AS1, ZNF562, ZNF812P, ZNF846, LOC100505555, FBXL12, UBL5, PIN1, OLFM2, COL5A3, RDH8, MIR5589, C3P1, C19orf66, ANGPTL6, PPAN, PPAN-P2RY11, SNORD105, SNORD105B, P2RY11, EIF3G, DNMT1, S1PR2, MIR4322, MRPL4, ICAM1, ICAM4, ICAM5, ZGLP1, FDX2, RAVER1, ICAM3, TYK2, CDC37, MIR1181, PDE4A, KEAP1, S1PR5, ATG4D, MIR1238, KRI1, CDKN2D, AP1M2, SLC44A2, ILF3-DT, ILF3, QTRT1, DNM2, MIR638, MIR4748, MIR199A1, MIR6793, TMED1, C19orf38, CARM1, YIPF2, TIMM29, SMARCA4, LDLR, MIR6886, SPC24, KANK2, DOCK6, LOC105372273, ANGPTL8, TSPAN16, RAB3D, TMEM205, CCDC159, PLPPR2, SWSAP1, EPOR, RGL3, CCDC151, PRKCSH, ELAVL3, ZNF653, MIR7974, ECSIT, CNN1, ELOF1, ACP5, ZNF627, ZNF833P, ZNF823, ZNF441, ZNF491, ZNF440, ZNF439, ZNF69, ZNF700, ZNF763, ZNF433-AS1, ZNF433, ZNF878, ZNF844, ZNF788P, ZNF20, ZNF625-ZNF20, ZNF625, ZNF136, LOC100289333, ZNF44, ZNF563, ZNF442, ZNF799, ZNF443, ZNF709, ZNF564, ZNF490, ZNF791, MAN2B1, WDR83, WDR83OS, DHPS, GNG14, FBXW9, TNPO2, SNORD135, SNORD41, TRIR, ASNA1, BEST2, HOOK2, MIR5684, JUNB, PRDX2, RNASEH2A, RTBDN, MAST1, MIR6794, DNASE2, KLF1, GCDH, SYCE2, FARSA, FARSA-AS1, CALR, MIR6515, RAD23A, GADD45GIP1, DAND5, NFIX, LYL1, TRMT1, NACC1, STX10, IER2, CACNA1A, CCDC130, MRI1, C19orf53, ZSWIM4, LOC284454, MIR24-2, MIR27A, MIR23A, NANOS3, MIR181C, MIR181D, C19orf57, CC2D1A, PODNL1, DCAF15, RFX1, RLN3, IL27RA, PALM3, MISP3, MIR1199, C19orf67, SAMD1, PRKACA, ASF1B, LOC100507373, ADGRL1, LINC01841, LINC01842, ADGRE5, DDX39A, PKN1, PTGER1, GIPC1, DNAJB1, MIR639, TECR, NDUFB7, CLEC17A, ADGRE3, SNORA104, ZNF333, ADGRE2, OR7C1, OR7A5, OR7A10, OR7A17, OR7C2, SLC1A6, CCDC105, CASP14, OR1I1, SYDE1, ILVBL, NOTCH3, MIR6795, EPHX3, BRD4, AKAP8, AKAP8L, WIZ, MIR1470, RASAL3, PGLYRP2, CYP4F22, CYP4F8, CYP4F3, CYP4F12, OR10H2, OR10H3, CYP4F24P, OR10H5, OR10H1, UCA1, LINC01835, CYP4F2, CYP4F11, OR10H4, LINC00661, LINC00905, LINC01855, TPM4, RAB8A, HSH2D, CIB3, FAM32A, AP1M1, KLF2, EPS15L1, CALR3, C19orf44, CHERP, SLC35E1, MED26, SMIM7, TMEM38A, NWD1, SIN3B, F2RL3, CPAMD8, HAUS8, MYO9B, SNORA118, USE1, OCEL1, NR2F6, USHBP1, BABAM1, ANKLE1, ABHD8, MRPL34, DDA1, ANO8, GTPBP3, PLVAP, BST2, BISPR, MVB12A, TMEM221, NXNL1, SLC27A1, LOC100507551, PGLS, FAM129C, COLGALT1, UNC13A, MAP1S, FCHO1, B3GNT3, INSL3, JAK3, RPL18A, SNORA68, SLC5A5, CCDC124, KCNN1, ARRDC2, IL12RB1, MAST3, PIK3R2, IFI30, MPV17L2, RAB3A, LOC102725254, PDE4C, LOC729966, IQCN, JUND, MIR3188, LSM4, PGPEP1, GDF15, MIR3189, LRRC25, SSBP4, ISYNA1, ELL, FKBP8, KXD1, UBA52, REX1BD, CRLF1, TMEM59L, KLHL26, CRTC1, COMP, UPF1, CERS1, GDF1, COPE, DDX49, HOMER3, HOMER3-AS1, SUGP2, ARMC6, SLC25A42, TMEM161A, MEF2B, BORCS8-MEF2B, BORCS8, RFXANK, NR2C2AP, NCAN, HAPLN4, TM6SF2, SUGP1, MAU2, GATAD2A, MIR640, TSSK6, NDUFA13, YJEFN3, CILP2, PBX4, LPAR2, GMIP, ATP13A1, ZNF101, ZNF14, LINC00663, ZNF56, ZNF506, ZNF253, ZNF93, ZNF682, ZNF90, ZNF486, MIR1270, ZNF826P, ZNF737, ZNF626, ZNF66, ZNF85, ZNF430, ZNF714, ZNF431, ZNF708, ZNF738, ZNF493, LINC00664, ZNF429, LOC400682, ZNF100, LOC641367, ZNF43, ZNF208, ZNF257, ZNF676, ZNF729, ZNF98, LOC101929124, LINC01233, GOLGA2P9, LOC100996349, LINC01785, ZNF492, ZNF99, ZNF723, ZNF728, LINC01859, LINC01858, ZNF730, ZNF724, IPO5P1, ZNF91, LINC01224, ZNF675, ZNF681, RPSAP58, ZNF726, LOC100505851, ZNF254, HAVCR1P1	447	PLPP2 (607126), THEG (609503), C2CD4C (610336), SHC2 (605217), MADCAM1 (102670), CDC34 (116948), GZMM (600311), BSG (109480), HCN2 (602781), POLRMT (601778), FGF22 (605831), RNF126 (615177), FSTL3 (605343), PALM (608134), MISP (615289), PTBP1 (600693), PLPPR3 (610391), AZU1 (162815), PRTN3 (177020), ELANE (130130), CFD (134350), MED16 (604062), KISS1R (604161), ARID3A (603265), GRIN3B (606651), TMEM259 (611011), CNN2 (602373), ABCA7 (605414), ARHGAP45 (601155), POLR2E (180664), GPX4 (138322), SBNO2 (615729), STK11 (602216), ATP5F1D (603150), MIDN (606700), CIRBP (602649), EFNA2 (602756), NDUFS7 (601825), GAMT (601240), DAZAP1 (607430), RPS15 (180535), APC2 (612034), PCSK4 (600487), REEP6 (609346), MEX3D (611009), MBD3 (603573), UQCR11 (609711), TCF3 (147141), ONECUT3 (611294), ATP8B3 (605866), REXO1 (609614), MIR1909 (615201), KLF16 (606139), ABHD17A (617942), ADAT3 (615302), SCAMP4 (613764), CSNK1G2 (602214), BTBD2 (608531), MKNK2 (605069), AP3D1 (607246), DOT1L (607375), PLEKHJ1 (617834), SF3A2 (600796), AMH (600957), JSRP1 (608743), OAZ1 (601579), LINGO3 (609792), LSM7 (607287), SPPL2B (608239), TMPRSS9 (610477), TIMM13 (607383), LMNB2 (150341), GADD45B (604948), GNG7 (604430), DIRAS1 (607862), SLC39A3 (612168), SGTA (603419), THOP1 (601117), ZNF77 (194551), TLE6 (612399), TLE2 (601041), AES (600188), GNA11 (139313), GNA15 (139314), S1PR4 (603751), NCLN (609156), CELF5 (612680), NFIC (600729), DOHH (611262), FZR1 (603619), MFSD12 (617745), HMG20B (605535), GIPC3 (608792), TBXA2R (188070), PIP5K1C (606102), TJP3 (612689), APBA3 (604262), MRPL54 (611858), RAX2 (610362), MATK (600038), ATCAY (608179), NMRK2 (608705), DAPK3 (603289), EEF2 (130610), PIAS4 (605989), ZBTB7A (605878), MAP2K2 (601263), CREB3L3 (611998), SIRT6 (606211), EBI3 (605816), SHD (610481), TMIGD2 (614715), FSD1 (609828), STAP2 (607881), SH3GL1 (601768), CHAF1A (601246), UBXN6 (611946), HDGFL2 (617884), PLIN4 (613247), PLIN5 (613248), LRG1 (611289), SEMA6B (608873), TNFAIP8L1 (615869), MYDGF (606746), DPP9 (608258), FEM1A (613538), TICAM1 (607601), PLIN3 (602702), UHRF1 (607990), KDM4B (609765), PTPRS (601576), ZNRF4 (612063), TINCR (615241), SAFB2 (608066), SAFB (602895), C19orf70 (616658), RPL36 (617893), LONP1 (605490), CATSPERD (617490), NRTN (602018), FUT6 (136836), FUT3 (111100), FUT5 (136835), NDUFA11 (612638), VMAC (617204), CAPS (114212), RANBP3 (603327), RFX2 (142765), ACSBG2 (614363), MLLT1 (159556), ACER1 (613491), CLPP (601119), ALKBH7 (613305), PSPN (602921), GTF2F1 (189968), KHSRP (603445), SLC25A41 (610822), SLC25A23 (608746), CRB3 (609737), DENND1C (613634), TUBB4A (602662), TNFSF9 (606182), CD70 (602840), TNFSF14 (604520), C3 (120700), TRIP10 (604504), SH2D3A (604721), VAV1 (164875), ADGRE1 (600493), ADGRE4P (612305), MBD3L2 (607964), INSR (147670), ARHGEF18 (616432), PEX11G (607583), MCOLN1 (605248), PNPLA6 (603197), CAMSAP3 (612685), XAB2 (610850), PET100 (614770), STXBP2 (601717), RETN (605565), MCEMP1 (609565), FCER2 (151445), CLEC4G (616256), CD209 (604672), CLEC4M (605872), LRRC8E (612891), MAP2K7 (603014), SNAPC2 (605076), CTXN1 (600135), TIMM44 (605058), ELAVL1 (603466), CCL25 (602565), FBN3 (608529), CERS4 (615334), CD320 (606475), NDUFA7 (602139), RPS28 (603685), KANK3 (614611), ANGPTL4 (605910), RAB11B (604198), MARCH2 (613332), HNRNPM (160994), PRAM1 (606466), MYO1F (601480), ADAMTS10 (608990), MBD3L1 (607963), MUC16 (606154), ZNF317 (613864), OR7D4 (611538), ZNF699 (609571), ZNF177 (601276), ZNF266 (604751), ZNF121 (194628), FBXL12 (609079), UBL5 (606849), PIN1 (601052), OLFM2 (617492), COL5A3 (120216), RDH8 (608575), C19orf66 (616808), ANGPTL6 (609336), PPAN (607793), P2RY11 (602697), EIF3G (603913), DNMT1 (126375), S1PR2 (605111), MRPL4 (611823), ICAM1 (147840), ICAM4 (614088), ICAM5 (601852), ZGLP1 (611639), FDX2 (614585), RAVER1 (609950), ICAM3 (146631), TYK2 (176941), CDC37 (605065), PDE4A (600126), KEAP1 (606016), S1PR5 (605146), ATG4D (611340), CDKN2D (600927), AP1M2 (607309), SLC44A2 (606106), ILF3 (603182), QTRT1 (609615), DNM2 (602378), MIR199A1 (610719), TMED1 (605395), CARM1 (603934), YIPF2 (617522), TIMM29 (617380), SMARCA4 (603254), LDLR (606945), SPC24 (609394), KANK2 (614610), DOCK6 (614194), ANGPTL8 (616223), TSPAN16 (617580), RAB3D (604350), TMEM205 (613771), SWSAP1 (614536), EPOR (133171), RGL3 (616743), CCDC151 (615956), PRKCSH (177060), ELAVL3 (603458), ZNF653 (611371), ECSIT (608388), CNN1 (600806), ACP5 (171640), ZNF627 (612248), ZNF69 (194543), ZNF20 (194557), ZNF136 (604078), ZNF44 (194542), ZNF443 (606697), MAN2B1 (609458), WDR83 (616850), DHPS (600944), FBXW9 (609074), TNPO2 (603002), ASNA1 (601913), BEST2 (607335), HOOK2 (607824), JUNB (165161), PRDX2 (600538), RNASEH2A (606034), RTBDN (609553), MAST1 (612256), DNASE2 (126350), KLF1 (600599), GCDH (608801), SYCE2 (611487), FARSA (602918), CALR (109091), RAD23A (600061), GADD45GIP1 (605162), DAND5 (609068), NFIX (164005), LYL1 (151440), TRMT1 (611669), NACC1 (610672), STX10 (603765), CACNA1A (601011), MRI1 (615105), MIR24-2 (610724), MIR27A (612153), MIR23A (607962), NANOS3 (608229), MIR181C (612746), CC2D1A (610055), RFX1 (600006), RLN3 (606855), IL27RA (605350), PRKACA (601639), ASF1B (609190), ADGRL1 (616416), ADGRE5 (601211), PKN1 (601032), PTGER1 (176802), GIPC1 (605072), DNAJB1 (604572), TECR (610057), NDUFB7 (603842), CLEC17A (616838), ADGRE3 (606101), ZNF333 (611811), ADGRE2 (606100), SLC1A6 (600637), CASP14 (605848), SYDE1 (617377), ILVBL (605770), NOTCH3 (600276), EPHX3 (617400), BRD4 (608749), AKAP8 (604692), AKAP8L (609475), RASAL3 (616561), PGLYRP2 (608199), CYP4F22 (611495), CYP4F8 (611545), CYP4F3 (601270), CYP4F12 (611485), UCA1 (617500), CYP4F2 (604426), CYP4F11 (611517), TPM4 (600317), RAB8A (165040), HSH2D (608349), CIB3 (610645), FAM32A (614554), AP1M1 (603535), KLF2 (602016), EPS15L1 (616826), CALR3 (611414), MED26 (605043), TMEM38A (611235), NWD1 (616250), SIN3B (607777), F2RL3 (602779), CPAMD8 (608841), HAUS8 (613434), MYO9B (602129), USE1 (610675), NR2F6 (132880), USHBP1 (611810), BABAM1 (612766), MRPL34 (611840), ANO8 (610216), GTPBP3 (608536), PLVAP (607647), BST2 (600534), NXNL1 (608791), SLC27A1 (600691), PGLS (604951), FAM129C (609967), COLGALT1 (617531), UNC13A (609894), MAP1S (607573), FCHO1 (613437), B3GNT3 (605863), INSL3 (146738), JAK3 (600173), RPL18A (604178), SLC5A5 (601843), KCNN1 (602982), IL12RB1 (601604), MAST3 (612258), PIK3R2 (603157), IFI30 (604664), MPV17L2 (616133), RAB3A (179490), PDE4C (600128), JUND (165162), LSM4 (607284), PGPEP1 (610694), GDF15 (605312), LRRC25 (607518), SSBP4 (607391), ISYNA1 (611670), ELL (600284), FKBP8 (604840), KXD1 (615178), UBA52 (191321), CRLF1 (604237), TMEM59L (617096), CRTC1 (607536), COMP (600310), UPF1 (601430), CERS1 (606919), GDF1 (602880), COPE (606942), HOMER3 (604800), SUGP2 (607993), SLC25A42 (610823), MEF2B (600661), BORCS8 (616601), RFXANK (603200), NR2C2AP (608719), NCAN (600826), TM6SF2 (606563), SUGP1 (607992), MAU2 (614560), GATAD2A (614997), TSSK6 (610712), NDUFA13 (609435), CILP2 (612419), PBX4 (608127), LPAR2 (605110), GMIP (609694), ZNF101 (603983), ZNF14 (194556), LINC00663 (617117), ZNF253 (606954), ZNF93 (603975), ZNF90 (603973), ZNF737 (603984), ZNF85 (603899), ZNF100 (603982), ZNF43 (603972), ZNF208 (603977), ZNF257 (606957), ZNF98 (603980), ZNF99 (603981), ZNF91 (603971), ZNF254 (604768)	CytoRegions Not Set				false	arr[hg19] 19p13.3p11(247,231-24,544,320) hmz	chr19:247231-24544320
LST.OSCHP		LOH	14	q31.3	21666.085	1747	325	SNORD3P3, LINC02329, LINC00911, FLRT2, LINC02328, LINC01148, LINC02330, GALC, GPR65, LOC101928791, LINC01146, KCNK10, SPATA7, PTPN21, ZC3H14, EML5, TTC8, FOXN3, FOXN3-AS1, FOXN3-AS2, EFCAB11, TDP1, KCNK13, PSMC1, NRDE2, CALM1, LINC02317, LINC00642, LOC105370619, TTC7B, LOC101928909, LOC105370622, RPS6KA5, DGLUCY, SNORA11B, GPR68, CCDC88C, PPP4R3A, CATSPERB, TC2N, FBLN5, TRIP11, ATXN3, NDUFB1, CPSF2, SLC24A4, RIN3, LGMN, GOLGA5, LINC02287, CHGA, ITPK1, ITPK1-AS1, MOAP1, TMEM251, GON7, UBR7, BTBD7, UNC79, COX8C, PRIMA1, FAM181A-AS1, FAM181A, ASB2, MIR4506, CCDC197, OTUB2, DDX24, IFI27L1, IFI27, IFI27L2, PPP4R4, SERPINA10, SERPINA6, SERPINA2, SERPINA1, SERPINA11, SERPINA9, SERPINA12, SERPINA4, SERPINA5, SERPINA3, SERPINA13P, GSC, DIGIT, DICER1, MIR3173, DICER1-AS1, CLMN, LINC02292, SYNE3, SNHG10, SCARNA13, GLRX5, LINC02318, TCL6, TCL1B, TCL1A, LOC107984703, TUNAR, C14orf132, BDKRB2, BDKRB1, ATG2B, GSKIP, AK7, LOC730202, PAPOLA, LINC02299, VRK1, LINC00618, LINC02304, LINC02325, LINC02291, LINC02312, LINC01550, C14orf177, BCL11B, SETD3, CCNK, CCDC85C, HHIPL1, CYP46A1, EML1, EVL, MIR151B, MIR342, DEGS2, YY1, MIR6764, SLC25A29, MIR345, SLC25A47, WARS, WDR25, BEGAIN, LINC00523, DLK1, MIR2392, MEG3, MIR770, MIR493, MIR337, MIR665, RTL1, MIR431, MIR433, MIR127, MIR432, MIR136, MEG8, MIR370, SNORD113-1, SNORD113-2, SNORD113-4, SNORD113-5, SNORD113-6, SNORD113-7, SNORD113-9, SNORD114-1, SNORD114-2, SNORD114-3, SNORD114-4, SNORD114-5, SNORD114-6, SNORD114-7, SNORD114-8, SNORD114-9, SNORD114-10, SNORD114-11, SNORD114-12, SNORD114-13, SNORD114-14, SNORD114-15, SNORD114-16, SNORD114-17, SNORD114-18, SNORD114-19, SNORD114-20, SNORD114-21, SNORD114-22, SNORD114-23, SNORD114-24, SNORD114-25, SNORD114-26, SNORD114-27, SNORD114-28, SNORD114-29, SNORD114-30, SNORD114-31, MIR379, MIR411, MIR299, MIR380, MIR1197, MIR323A, MIR758, MIR329-1, MIR329-2, MIR494, MIR1193, MIR543, MIR495, MIR376C, MIR376A2, MIR654, MIR376B, MIR376A1, MIR300, MIR1185-1, MIR1185-2, MIR381HG, MIR381, MIR487B, MIR539, MIR889, MIR544A, MIR655, MIR487A, MIR382, MIR134, MIR668, MIR485, MIR323B, MIR154, MIR496, MIR377, MIR541, MIR409, MIR412, MIR369, MIR410, MIR656, MEG9, LINC02285, LINC00524, LINC02314, DIO3OS, MIR1247, DIO3, LINC00239, PPP2R5C, DYNC1H1, HSP90AA1, WDR20, MOK, ZNF839, CINP, TECPR2, ANKRD9, MIR4309, LINC02323, RCOR1, TRAF3, AMN, CDC42BPB, LBHD2, EXOC3L4, LINC00677, TNFAIP2, LINC00605, LOC105378183, EIF5, SNORA28, MARK3, CKB, TRMT61A, BAG5, APOPT1, KLC1, XRCC3, ZFYVE21, PPP1R13B, LINC00637, ATP5MPL, TDRD9, RD3L, ASPG, MIR203A, MIR203B, KIF26A, C14orf144, C14orf180, TMEM179, LINC02280, MIR4710, INF2, ADSSL1, SIVA1, AKT1, ZBTB42, LINC00638, CEP170B, PLD4, AHNAK2, CLBA1, CDCA4, GPR132, LINC02298, JAG2, MIR6765, NUDT14, BRF1, BTBD6, PACS2, TEX22, LOC100507437, MTA1, CRIP2, CRIP1, TEDC1, TMEM121, LOC105370697, MIR8071-1, MIR8071-2, ELK2AP, MIR4507, MIR4538, MIR4537, MIR4539, FAM30A, ADAM6, LINC00226, LINC00221, MIR5195	147	FLRT2 (604807), GALC (606890), GPR65 (604620), KCNK10 (605873), SPATA7 (609868), PTPN21 (603271), ZC3H14 (613279), TTC8 (608132), FOXN3 (602628), TDP1 (607198), KCNK13 (607367), PSMC1 (602706), CALM1 (114180), RPS6KA5 (603607), GPR68 (601404), CCDC88C (611204), PPP4R3A (610351), CATSPERB (611169), FBLN5 (604580), TRIP11 (604505), ATXN3 (607047), NDUFB1 (603837), CPSF2 (606028), SLC24A4 (609840), RIN3 (610223), LGMN (602620), GOLGA5 (606918), CHGA (118910), ITPK1 (601838), MOAP1 (609485), GON7 (617436), UBR7 (613816), BTBD7 (610386), UNC79 (616884), COX8C (616855), PRIMA1 (613851), ASB2 (605759), OTUB2 (608338), DDX24 (606181), IFI27L1 (611320), IFI27 (600009), IFI27L2 (611319), PPP4R4 (616790), SERPINA10 (605271), SERPINA6 (122500), SERPINA1 (107400), SERPINA9 (615677), SERPINA12 (617471), SERPINA4 (147935), SERPINA5 (601841), SERPINA3 (107280), GSC (138890), DICER1 (606241), CLMN (611121), SYNE3 (610861), GLRX5 (609588), TCL6 (604412), TCL1B (603769), TCL1A (186960), TUNAR (615719), BDKRB2 (113503), BDKRB1 (600337), ATG2B (616226), GSKIP (616605), AK7 (615364), PAPOLA (605553), VRK1 (602168), BCL11B (606558), SETD3 (615671), CCNK (603544), CYP46A1 (604087), EML1 (602033), EVL (616912), DEGS2 (610862), YY1 (600013), SLC25A29 (615064), SLC25A47 (609911), WARS (191050), DLK1 (176290), MEG3 (605636), RTL1 (611896), MIR431 (611708), MIR433 (611711), MIR127 (611709), MIR136 (611710), MEG8 (613648), MIR370 (612553), SNORD113-1 (613650), SNORD114-1 (613651), MIR379 (616358), MIR380 (613654), MIR494 (616036), MIR495 (615149), MIR376C (610983), MIR376A2 (610960), MIR376B (610961), MIR376A1 (610959), MIR487B (615037), MIR134 (610164), MIR485 (615385), MIR409 (614057), MIR369 (611794), MIR410 (615036), MIR656 (616376), DIO3OS (608523), DIO3 (601038), PPP2R5C (601645), DYNC1H1 (600112), HSP90AA1 (140571), WDR20 (617741), MOK (605762), CINP (613362), TECPR2 (615000), RCOR1 (607675), TRAF3 (601896), AMN (605799), CDC42BPB (614062), TNFAIP2 (603300), EIF5 (601710), MARK3 (602678), CKB (123280), BAG5 (603885), APOPT1 (616003), KLC1 (600025), XRCC3 (600675), ZFYVE21 (613504), PPP1R13B (606455), ATP5MPL (604573), TDRD9 (617963), MIR203A (611899), KIF26A (613231), INF2 (610982), ADSSL1 (612498), SIVA1 (605567), AKT1 (164730), ZBTB42 (613915), AHNAK2 (608570), CDCA4 (612270), GPR132 (606167), JAG2 (602570), NUDT14 (609219), BRF1 (604902), PACS2 (610423), MTA1 (603526), CRIP2 (601183), CRIP1 (123875), FAM30A (616623)	CytoRegions Not Set				false	arr[hg19] 14q31.3q32.33(85,615,939-107,282,024) hmz	chr14:85615939-107282024
LST.OSCHP		LOH	X	q11.1	5476.542	628	18	SPIN4, LINC01278, ARHGEF9, ARHGEF9-IT1, MIR1468, AMER1, ASB12, MTMR8, ZC4H2, ZC3H12B, LAS1L, FRMD8P1, MSN, MIR223, VSIG4, HEPH, EDA2R, AR	12	ARHGEF9 (300429), AMER1 (300647), ASB12 (300891), ZC4H2 (300897), ZC3H12B (300889), LAS1L (300964), MSN (309845), MIR223 (300694), VSIG4 (300353), HEPH (300167), EDA2R (300276), AR (313700)	CytoRegions Not Set			CLEMENTS:Sophie	true	arr[hg19] Xq11.1q12(61,732,393-67,208,935) hmz	chrX:61732393-67208935
LST.OSCHP		LOH	17	p13.3	4898.992	412	135	VPS53, FAM57A, GEMIN4, DBIL5P, GLOD4, MRM3, NXN, LOC101927727, TIMM22, ABR, MIR3183, BHLHA9, TRARG1, YWHAE, CRK, MYO1C, INPP5K, PITPNA-AS1, PITPNA, SLC43A2, SCARF1, RILP, PRPF8, TLCD2, MIR22HG, MIR22, WDR81, SERPINF2, SERPINF1, SMYD4, RPA1, RTN4RL1, LOC105371485, DPH1, OVCA2, MIR132, MIR212, HIC1, SMG6, LOC101927839, SRR, TSR1, SNORD91B, SNORD91A, SGSM2, MNT, LOC284009, METTL16, PAFAH1B1, CLUH, MIR6776, LOC105371592, CCDC92B, MIR1253, RAP1GAP2, LOC101927911, OR1D5, OR1D2, OR1E3, OR1G1, LOC100288728, OR1A2, OR1A1, OR1D4, OR3A2, OR3A1, OR3A4P, OR1E1, OR3A3, OR1E2, SPATA22, ASPA, TRPV3, TRPV1, SHPK, CTNS, TAX1BP3, P2RX5-TAX1BP3, EMC6, P2RX5, ITGAE, HASPIN, NCBP3, CAMKK1, P2RX1, ATP2A3, LINC01975, ZZEF1, CYB5D2, ANKFY1, UBE2G1, LOC103021295, SPNS3, SPNS2, MYBBP1A, GGT6, SMTNL2, LINC01996, ALOX15, PELP1, LOC101559451, ARRB2, MED11, CXCL16, ZMYND15, TM4SF5, VMO1, GLTPD2, PSMB6, PLD2, MINK1, CHRNE, C17orf107, GP1BA, SLC25A11, RNF167, PFN1, ENO3, SPAG7, CAMTA2, MIR6864, MIR6865, INCA1, KIF1C, LOC102724009, SLC52A1, ZFP3, ZNF232, LOC101928000, USP6, ZNF594, LOC100130950, SCIMP, RABEP1, NUP88	84	VPS53 (615850), FAM57A (611627), GEMIN4 (606969), MRM3 (612600), NXN (612895), TIMM22 (607251), ABR (600365), BHLHA9 (615416), TRARG1 (612211), YWHAE (605066), CRK (164762), MYO1C (606538), INPP5K (607875), PITPNA (600174), SLC43A2 (610791), SCARF1 (607873), RILP (607848), PRPF8 (607300), MIR22 (612077), WDR81 (614218), SERPINF2 (613168), SERPINF1 (172860), RPA1 (179835), RTN4RL1 (610461), DPH1 (603527), OVCA2 (607896), MIR132 (610016), MIR212 (613487), HIC1 (603825), SMG6 (610963), SRR (606477), TSR1 (611214), SGSM2 (611418), MNT (603039), PAFAH1B1 (601545), CLUH (616184), OR1D2 (164342), SPATA22 (617673), ASPA (608034), TRPV3 (607066), TRPV1 (602076), SHPK (605060), CTNS (606272), TAX1BP3 (616484), P2RX5 (602836), ITGAE (604682), HASPIN (609240), NCBP3 (616624), CAMKK1 (611411), P2RX1 (600845), ATP2A3 (601929), ANKFY1 (607927), UBE2G1 (601569), SPNS3 (611701), SPNS2 (612584), MYBBP1A (604885), GGT6 (612341), ALOX15 (152392), PELP1 (609455), ARRB2 (107941), MED11 (612383), CXCL16 (605398), ZMYND15 (614312), TM4SF5 (604657), PSMB6 (600307), PLD2 (602384), MINK1 (609426), CHRNE (100725), GP1BA (606672), SLC25A11 (604165), RNF167 (610431), PFN1 (176610), ENO3 (131370), SPAG7 (610056), CAMTA2 (611508), INCA1 (617374), KIF1C (603060), SLC52A1 (607883), ZFP3 (194480), ZNF232 (616463), USP6 (604334), SCIMP (614406), RABEP1 (603616), NUP88 (602552)	CytoRegions Not Set				true	arr[hg19] 17p13.3p13.2(400,958-5,299,950) hmz	chr17:400958-5299950
