comp_slp                Identify SLPs via compensation
cons_slp                Identify consensus SLPs
corr_slp                Identify SLPs via correlation
est_im                  Estimate the importance threshold for GENIE3
example_compSLP         SLPs predicted by comp_slp
example_comp_mut        Patients mutations to be use in the comp_slp
example_corrSLP         SLPs predicted by corr_slp
example_corr_mut        Patients mutations to be use in the corr_slp
example_expr            Expression data to be used in comp_slp
example_z               Expression data to be used in corr_slp
genie3                  Run GENIE3
getlink                 Get sorted list of regulatory links in GENIE3
                        results
merge_slp               Merge SLPs
pp_tcga                 Process tumour genomic data
scr_slp                 Identify SLPs in screen hits
