DEScan2                 DEScan2
RleListToRleMatrix      RleListToRleMatrix
binnedCoverage          binnedCoverage
computeZ                computeZ
constructBedRanges      constructBedRanges
countFinalRegions       countFinalRegions
createGranges           createGranges
cutGRangesPerChromosome
                        cutGRangesPerChromosome
divideEachSampleByChromosomes
                        divideEachSampleByChromosomes
finalRegions            finalRegions
findOverlapsOverSamples
                        findOverlapsOverSamples
findPeaks               findPeaks
fromSamplesToChrsGRangesList
                        fromSamplesToChrsGRangesList
keepRelevantChrs        keepRelevantChrs
readBamAsBed            readBamAsBed
readBedFile             readBedFile
readFilesAsGRangesList
                        readFilesAsGRangesList
saveGRangesAsBed        saveGRangesAsBed
saveGRangesAsTsv        saveGRangesAsTsv
setGRGenomeInfo         setGRGenomeInfo given a genome code (i.e.
                        "mm9","mm10","hg19","hg38") retrieve the
                        SeqInfo of that genome and assigns it to the
                        input GRanges. Finally filters out those Infos
                        not necessary to the GRanges.
