phastCons100way.UCSC.hg19

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see phastCons100way.UCSC.hg19.

UCSC phastCons conservation scores for hg19


Bioconductor version: 3.9

Store UCSC phastCons conservation scores for the human genome (hg19) calculated from multiple alignments with other 99 vertebrate species.

Author: Robert Castelo [aut, cre]

Maintainer: Robert Castelo <robert.castelo at upf.edu>

Citation (from within R, enter citation("phastCons100way.UCSC.hg19")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("phastCons100way.UCSC.hg19")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF
NEWS Text

Details

biocViews AnnotationData, Genetics, GenomicScores, Homo_sapiens
Version 3.7.2
License Artistic-2.0
Depends R (>= 3.0.0), GenomicScores(>= 1.3.19)
Imports utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb, BSgenome
System Requirements
URL
See More
Suggests
Linking To
Enhances
Depends On Me
Imports Me RareVariantVis
Suggests Me ATACseqQC, GenomicScores, VariantFiltering
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package phastCons100way.UCSC.hg19_3.7.2.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Package Short Url https://bioconductor.org/packages/phastCons100way.UCSC.hg19/
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