sscore

This package is for version 3.14 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see sscore.

S-Score Algorithm for Affymetrix Oligonucleotide Microarrays


Bioconductor version: 3.14

This package contains an implementation of the S-Score algorithm as described by Zhang et al (2002).

Author: Richard Kennedy <rkennedy at ms.soph.uab.edu>, based on C++ code from Li Zhang <zhangli at odin.mdacc.tmc.edu> and Borland Delphi code from Robnet Kerns <rtkerns at vcu.edu>.

Maintainer: Richard Kennedy <rkennedy at ms.soph.uab.edu>

Citation (from within R, enter citation("sscore")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("sscore")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("sscore")
SScore primer PDF R Script
Reference Manual PDF

Details

biocViews DifferentialExpression, Software
Version 1.66.0
In Bioconductor since BioC 1.8 (R-2.3) (18 years)
License GPL (>= 2)
Depends R (>= 1.8.0), affy, affyio
Imports
System Requirements
URL http://home.att.net/~richard-kennedy/professional.html
See More
Suggests affydata
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package sscore_1.66.0.tar.gz
Windows Binary sscore_1.66.0.zip
macOS 10.13 (High Sierra) sscore_1.66.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/sscore
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/sscore
Bioc Package Browser https://code.bioconductor.org/browse/sscore/
Package Short Url https://bioconductor.org/packages/sscore/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.14 Source Archive