metaSeq

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see metaSeq.

Meta-analysis of RNA-Seq count data in multiple studies


Bioconductor version: 3.14

The probabilities by one-sided NOISeq are combined by Fisher's method or Stouffer's method

Author: Koki Tsuyuzaki, Itoshi Nikaido

Maintainer: Koki Tsuyuzaki <k.t.the-answer at hotmail.co.jp>

Citation (from within R, enter citation("metaSeq")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("metaSeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("metaSeq")
metaSeq PDF R Script
Reference Manual PDF

Details

biocViews DifferentialExpression, ImmunoOncology, RNASeq, Sequencing, Software
Version 1.34.0
In Bioconductor since BioC 2.13 (R-3.0) (10.5 years)
License Artistic-2.0
Depends R (>= 2.13.0), NOISeq, snow, Rcpp
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package metaSeq_1.34.0.tar.gz
Windows Binary metaSeq_1.34.0.zip (32- & 64-bit)
macOS 10.13 (High Sierra) metaSeq_1.34.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/metaSeq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/metaSeq
Bioc Package Browser https://code.bioconductor.org/browse/metaSeq/
Package Short Url https://bioconductor.org/packages/metaSeq/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.14 Source Archive