clippda

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see clippda.

A package for the clinical proteomic profiling data analysis


Bioconductor version: 3.14

Methods for the nalysis of data from clinical proteomic profiling studies. The focus is on the studies of human subjects, which are often observational case-control by design and have technical replicates. A method for sample size determination for planning these studies is proposed. It incorporates routines for adjusting for the expected heterogeneities and imbalances in the data and the within-sample replicate correlations.

Author: Stephen Nyangoma

Maintainer: Stephen Nyangoma <s.o.nyangoma at bham.ac.uk>

Citation (from within R, enter citation("clippda")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("clippda")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("clippda")
Sample Size Calculation PDF R Script
Reference Manual PDF

Details

biocViews DifferentialExpression, MultipleComparison, OneChannel, Preprocessing, Proteomics, Software
Version 1.44.0
In Bioconductor since BioC 2.5 (R-2.10) (14.5 years)
License GPL (>=2)
Depends R (>= 2.13.1), limma, statmod, rgl, lattice, scatterplot3d, graphics, grDevices, stats, utils, Biobase, tools, methods
Imports
System Requirements
URL http://www.cancerstudies.bham.ac.uk/crctu/CLIPPDA.shtml
See More
Suggests
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package clippda_1.44.0.tar.gz
Windows Binary clippda_1.44.0.zip
macOS 10.13 (High Sierra) clippda_1.44.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/clippda
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/clippda
Bioc Package Browser https://code.bioconductor.org/browse/clippda/
Package Short Url https://bioconductor.org/packages/clippda/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.14 Source Archive