farms
FARMS - Factor Analysis for Robust Microarray Summarization
Bioconductor version: 2.7
The package provides the summarization algorithm called Factor Analysis for Robust Microarray Summarization (FARMS) and a novel unsupervised feature selection criterion called "I/NI-calls"
Author: Djork-Arne Clevert <okko at clevert.de>
Maintainer: Djork-Arne Clevert <okko at clevert.de>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("farms")
To cite this package in a publication, start R and enter:
citation("farms")
Documentation
| R Script | Using farms | |
| Reference Manual |
Details
| biocViews | GeneExpression, Microarray, Preprocessing, QualityControl |
| Depends | R (>= 2.8), affy(>= 1.20.0), MASS, methods |
| Imports | affy, MASS, Biobase(>= 1.13.41), methods, graphics |
| Suggests | affydata, Biobase, utils |
| System Requirements | |
| License | LGPL (>= 2.1) |
| URL | http://www.bioinf.jku.at/software/farms/farms.html |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Version | 1.2.0 |
| Since | Bioconductor 2.7 (R-2.12) |
Package Downloads
| Package Source | farms_1.2.0.tar.gz |
| Windows Binary | farms_1.2.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | farms_1.2.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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