GSRI
Gene Set Regulation Index
Bioconductor version: 2.7
Estimates the number of differentially expressed genes in a gene set with the Gene Set Regulation Index (GSRI).
Author: Kilian Bartholome, Julian Gehring, Clemens Kreutz, Jens Timmer
Maintainer: Julian Gehring <julian.gehring at fdm.uni-freiburg.de>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("GSRI")
To cite this package in a publication, start R and enter:
citation("GSRI")
Documentation
| R Script | Introduction on how to use the Gene Set Regulation Index (GSRI) package to estimate the number of regulated genes in a gene set | |
| Reference Manual |
Details
| biocViews | Microarray, Transcription, DifferentialExpression, Genetics |
| Depends | R (>= 2.10.0), fdrtool |
| Imports | boot, graphics, stats, utils, genefilter |
| Suggests | |
| System Requirements | |
| License | GPL-3 |
| URL | http://www.fdmold.uni-freiburg.de/~jgehring/ |
| Depends On Me | |
| Imports Me | les |
| Suggests Me | |
| Version | 1.2.0 |
| Since | Bioconductor 2.6 (R-2.11) |
Package Downloads
| Package Source | GSRI_1.2.0.tar.gz |
| Windows Binary | GSRI_1.2.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | GSRI_1.2.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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