\name{r10kcodCHRLOC} \alias{r10kcodCHRLOC} \alias{r10kcodCHRLOCEND} \title{Map Manufacturer IDs to Chromosomal Location} \description{ r10kcodCHRLOC is an R object that maps manufacturer identifiers to the starting position of the gene. The position of a gene is measured as the number of base pairs. The CHRLOCEND mapping is the same as the CHRLOC mapping except that it specifies the ending base of a gene instead of the start. } \details{ Each manufacturer identifier maps to a named vector of chromosomal locations, where the name indicates the chromosome. Due to inconsistencies that may exist at the time the object was built, these vectors may contain more than one chromosome and/or location. If the chromosomal location is unknown, the vector will contain an \code{NA}. Chromosomal locations on both the sense and antisense strands are measured as the number of base pairs from the p (5' end of the sense strand) to q (3' end of the sense strand) arms. Chromosomal locations on the antisense strand have a leading "-" sign (e. g. -1234567). Since some genes have multiple start sites, this field can map to multiple locations. Mappings were based on data provided by: UCSC Genome Bioinformatics (Rattus norvegicus) ftp://hgdownload.cse.ucsc.edu/goldenPath/rn4 With a date stamp from the source of: 2009-Jul5 } \examples{ x <- r10kcodCHRLOC # Get the probe identifiers that are mapped to chromosome locations mapped_probes <- mappedkeys(x) # Convert to a list xx <- as.list(x[mapped_probes]) if(length(xx) > 0) { # Get the CHRLOC for the first five probes xx[1:5] # Get the first one xx[[1]] } } \keyword{datasets}