\name{align-class}
\Rdversion{1.1}
\docType{class}
\alias{align}
\alias{align-class}

\title{Class "align" }
\description{This object contains the individual motifs identified but also the location (seqID and position) of the sites in the original sequence data. It also included the spaced dyad from which the motifs is derived, PWM score p-value cuttoff for the run. }
\section{Objects from the Class}{
Objects can be created by calls of the form \code{new("align", ...)}.
}
\section{Slots}{
	 \describe{
    \item{seq}{:Motif identified . }
	\item{chr}{:Chromosome identified. }
	\item{start}{:Sequence start. }
	\item{end}{:Sequence end. }
	\item{strand}{:Strand position. }
	\item{seqID}{:Sequence identification. }
	\item{pos}{:Position identification. }
	\item{pval}{:p-Value for each identification. }
	\item{fastaHeader}{:Fasta accession. }
	
  }
}
\author{Arnaud Droit \email{arnaud.droit@ircm.qc.ca}}

\seealso{
	 \code{\linkS4class{gadem}} , \code{\linkS4class{motif}}, \code{\linkS4class{parameters}}
}
\examples{
showClass("align")
}
\keyword{classes}