\name{toDot-methods}
\docType{methods}
\alias{toDot}
\alias{toDot,graphNEL,character,list,list-method}
\alias{toDot,graphNEL,character,missing,missing-method}
\alias{toDot,graphNEL,character,missing,list-method}
\alias{toDot,graphNEL,missing,missing,missing-method}
\alias{toDot,graphNEL,missing,missing,list-method}
\alias{toDot,graphNEL,missing,character,missing-method}
\alias{toDot,graphNEL,missing,list,list-method}
\alias{toDot,graphNEL,missing,list,missing-method}
%\S4method{toDot,graphNEL,character,list,list-method}
%\S4method{toDot,graphNEL,character,missing,missing-method}
%\S4method{toDot,graphNEL,character,missing,list-method}
%\S4method{toDot,graphNEL,missing,missing,missing-method}
%\S4method{toDot,graphNEL,missing,missing,list-method}
%\S4method{toDot,graphNEL,missing,character,missing-method}
%\S4method{toDot,graphNEL,missing,list,list-method}
%\S4method{toDot,graphNEL,missing,list,missing-method}
\title{ Methods for Function toDot in Package `ontoTools' -- should be replaced
by Rgraphviz facilities soon}
\description{These methods write graphviz dot language for
various graph structures encountered with ontologies.  This
activity should be moved to Rgraphviz ASAP, but there are
aspects of representation and portability that need to be
resolved.}
\section{Methods}{\describe{

\item{G = "graphNEL", outDotFile = "character", renderList = "list", optList = "list"}{ create dot language descriptionof graph }

\item{G = "graphNEL", outDotFile = "character", renderList = "missing", optList = "missing"}{ create dot language descriptionof graph }

\item{G = "graphNEL", outDotFile = "character", renderList = "missing", optList = "list"}{ create dot language descriptionof graph }

\item{G = "graphNEL", outDotFile = "missing", renderList = "missing", optList = "missing"}{ create dot language descriptionof graph }

\item{G = "graphNEL", outDotFile = "missing", renderList = "missing", optList = "list"}{ create dot language descriptionof graph }

\item{G = "graphNEL", outDotFile = "missing", renderList = "character", optList = "missing"}{ create dot language descriptionof graph }

\item{G = "graphNEL", outDotFile = "missing", renderList = "list", optList = "list"}{ create dot language descriptionof graph }

\item{G = "graphNEL", outDotFile = "missing", renderList = "list", optList = "missing"}{ create dot language descriptionof graph }

\item{G = "compoundGraph", outDotFile = "character", renderList = "list", optList = "missing"}{ create dot language descriptionof graph }

\item{G = "compoundGraph", outDotFile = "character", renderList = "list", optList = "list"}{ create dot language descriptionof graph }

\item{G = "compoundGraph", outDotFile = "missing", renderList = "list", optList = "missing"}{ create dot language descriptionof graph }
}}
\examples{
example(randomGraph)
tmp <- tempfile()
toDot( g1, tmp )
readLines(tmp)
unlink(tmp)
}
\keyword{methods}