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\name{Non-documented objects}
\alias{Non-documented objects}
\title{Non-documented objects}


% Calibration and normalization functions
\alias{fitIWPCA}
\alias{calibrateMultiscan}
\alias{normalizeAffine}
\alias{normalizeAverage}
\alias{backtransformAffine}
\alias{normalizeQuantile}
\alias{normalizeQuantile.default}
\alias{normalizeQuantileRank}
\alias{normalizeQuantileSpline}
\alias{normalizeCurveFit}
\alias{normalizeLoess}
\alias{normalizeLowess}
\alias{normalizeRobustSpline}
\alias{normalizeSpline}
\alias{averageQuantile}

% Plot functions
\alias{plotMvsA}
\alias{plotMvsAPairs}
\alias{plotMvsMPairs}
\alias{plotDensity}
\alias{plotXYCurve}
\alias{lines.XYCurveFit}

% Matrix operations
\alias{rowAverages}
\alias{rowAverages.matrix}
\alias{sampleCorrelations}
\alias{medianPolish}
\alias{backtransformXYCurve}
\alias{backtransformXYCurve.matrix}

% Simple linear-algebra
\alias{projectUontoV}
\alias{scalarProduct}
\alias{tr}

% Advanced linear-algebra
\alias{iwpca}
\alias{wpca}
\alias{fitPrincipalCurve}
\alias{backtransformPrincipalCurve}
\alias{principal.curve.hb} % Internal patch of princurve::principal.curve().

% Miscellaneous statistical functions
\alias{likelihood}
\alias{predict.lowess}

\description{
  This page contains aliases for all "non-documented" objects that
  \code{R CMD check} detects in this package.

  Almost all of them are \emph{generic} functions that have specific
  document for the corresponding method coupled to a specific class.
  Other functions are re-defined by \code{setMethodS3()} to
  \emph{default} methods. Neither of these two classes are non-documented
  in reality.
  The rest are deprecated methods.
}

\author{Henrik Bengtsson (\url{http://www.braju.com/R/})}


\keyword{documentation}
\keyword{internal}