\name{graphDensity} \alias{graphDensity} %- Also NEED an '\alias' for EACH other topic documented here. \title{ Graph density} \description{ The graph density is defined as d = E/(V*(V-1)/2) where E is the number of edges and V of nodes. } \usage{ graphDensity(graph) } \arguments{ \item{graph}{ A graph object} } \details{ The density of a graph lies between [0,1] } \value{ A value between [0,1] } \references{ Aittokallio and Schwikowski (2006), Graph-based methods for analysing networks in cell biology, Briefings in Bioinformatics, 7, 243-255.} \author{ Jitao David Zhang \url{j.zhang@dkfz.de} } \examples{ tnodes <- c("Hamburg","Dortmund","Bremen", "Paris") tedges <- list("Hamburg"=c("Dortmund", "Bremen"), "Dortmund"=c("Hamburg"), "Bremen"=c("Hamburg"), "Paris"=c()) tgraph <- new("graphNEL", nodes = tnodes, edgeL = tedges) graphDensity(tgraph) }