\name{makeTranscript} \alias{makeTranscript} %- Also NEED an '\alias' for EACH other topic documented here. \title{Creates an object of class Transcript} \description{ Creates an object of class Transcript. This represents all known transcript structures in Ensembl. } \usage{ makeTranscript(id, type, biomart, dp = NULL) } %- maybe also 'usage' for other objects documented here. \arguments{ \item{id}{An identifier used to specify of which gene/transcript the transcript structures should be retrieved} \item{type}{The type of identifiers used, examples are ensembl\_gene\_id, hgnc\_symbol,entrezgene. See listAttributes function of thebiomaRt package for more info} \item{biomart}{Mart object, created by the useMart function of biomaRt} \item{dp}{object of class DisplayPars, determines the display of features on the plot} } \value{ An object of class Transcript } \references{ ~put references to the literature/web site here ~ } \author{Steffen Durinck and Jim Bullard} \seealso{\code{\link{gdPlot}}} \examples{ ##---- Should be DIRECTLY executable !! ---- ##-- ==> Define data, use random, ##-- or do help(data=index) for the standard data sets. ## The function is currently defined as function (id, type, biomart, dp = NULL) { if (missing(id)) stop("Need to specify a gene identifier for creating a Transcript") pt <- getClass("Transcript")@prototype if (is.null(dp)) dp <- pt@dp if (missing(type)) type = pt@type new("Transcript", id = id, type = type, biomart = biomart, dp = dp) } } % Add one or more standard keywords, see file 'KEYWORDS' in the % R documentation directory. \keyword{hplot}