\name{bankSummary} \alias{bankSummary} \title{Computes informations on all a bank file} \description{ This functions computes informations (with function compoSeq, GCcontent, of seqSkew) on a complete bank file. It returns a data frame with one line by sequences in the bank file. Parameter "name" can be use to limit the exploration to only a few sequences. } \usage{ bankSummary(file, name = NULL, type = "F", fun = compoSeq, seqno = 0) } \arguments{ \item{file}{Integer/scalar, File name of the bank (fasta file)} \item{seqno}{Integer/scalar, Sequence number (buffer number)} \item{name}{String/vector, Names of sequences in bank file, NULL: uses all sequences of the bank} \item{type}{String/scalar, Bank format ("F" -> fasta. "E" -> embl, "G" -> GenBank)} \item{fun}{Function, Function to be used (for example seqSkew} } \value{ a data frame with one line by sequence. } \keyword{utilities} \author{Antoine Lucas} \seealso{\code{\link{bankDensityProfile}}} \examples{ for(i in 1:8) { s=randomSeq(n=100) placeString(s,seqno=0) writeFasta("toto_norm.fa",append=TRUE,name=i) } bankSummary(file="toto_norm.fa") bankSummary(file="toto_norm.fa",fun=seqSkew) }