\name{residualsEcdfPlotFromDiagnostics} \Rdversion{1.1} \alias{residualsEcdfPlotFromDiagnostics} \title{ Produce a diagnostic plot to check the fit of a raw variance function. } \description{ This function produces the same plot as \code{\link{residualsEcdfPlot}}. While \code{\link{residualsEcdfPlot}} takes a CountDataSet as argument and the calls \code{\link{varianceFitDiagnostics}}, the present function expects the output of a call to \code{\link{varianceFitDiagnostics}} (or \code{\link{varianceFitDiagnosticsForMatrix}}) as input. } \usage{ residualsEcdfPlotFromDiagnostics(fitdiag, ncuts = 7, plotTitle = "Residuals ECDF plot") } %- maybe also 'usage' for other objects documented here. \arguments{ \item{fitdiag}{ a data frame as returned by \code{\link{varianceFitDiagnostics}} or \code{\link{varianceFitDiagnosticsForMatrix}} } \item{ncuts}{ the number of baseMean strata } \item{plotTitle}{ the main title for the plot } } \details{ See \code{\link{residualsEcdfPlot}}. } \value{ None, but a plot is produced. } \seealso{ \code{\link{residualsEcdfPlot}}, \code{\link{varianceFitDiagnostics}}, \code{\link{varianceFitDiagnosticsForMatrix}} } \examples{ cds <- makeExampleCountDataSet() cds <- estimateSizeFactors( cds ) cds <- estimateVarianceFunctions( cds ) vfd <- varianceFitDiagnostics( cds, "A" ) residualsEcdfPlotFromDiagnostics( vfd ) }