\name{createIngenuityFile} \alias{createIngenuityFile} \title{A Wrapper Function to Create Files for Ingenuity Analysis} \description{ A Wrapper Function to Create Files for Ingenuity Analysis } \usage{ createIngenuityFile(..., mydir = getwd(), eSet, filename = "IngenuityFile") } \arguments{ \item{\dots}{a list of regressResult class } \item{mydir}{the directory where you would like to store the file} \item{eSet}{an ExpressionSet} \item{filename}{file name} } \details{ This function enable to create the ingenuity upload file based on a list of regressResult } \value{ create an Ingenuity upload file } \references{\code{http://www.ingenuity.com/}} \author{Xiwei Wu, Arthur Li} \examples{ data(eSetExample) design<- new("designMatrix", target=pData(eSetExample), covariates = "Treatment") contrast<- new("contrastMatrix", design.matrix = design, compare1 = "Treated", compare2 = "Control") result<- regress(eSetExample, contrast) \dontrun{createIngenuityFile(result, eSet = eSetExample)} }