\name{@ANNOBJPREFIX@PDB} \alias{@ANNOBJPREFIX@PDB} \title{Mappings from a PFAM Accession number to a PDB ID} \description{ This is an R object that always contains mappings from a PFAM accession (AC) to a PDB ID } \details{ The PDB ID along with the start point and end point have been attached to the PFAM accessions in this object. More Details: PDB (\url{http://www.rcsb.org/pdb/index.html}), the single worldwide repository for the processing and distribution of 3-D biological macromolecular structure data. Reference: H.M. Berman, J. Westbrook, Z. Feng, G. Gilliland, T.N. Bhat, H. Weissig, I.N. Shindyalov, P.E. Bourne: The Protein Data Bank. Nucleic Acids Research , 28 pp. 235-242 (2000) } \references{\url{http://www.sanger.ac.uk/Software/Pfam/} and \url{ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/userman.txt}} \examples{ #To map from PFAM to PDB: x <- @ANNOBJPREFIX@PDB # Get the PFAM identifiers that are mapped to a PDB mapped_keys <- mappedkeys(x) # Convert to a list xx <- as.list(x[mapped_keys]) if(length(xx) > 0) { # Get the PDB info for the first five PFAM IDs xx[1:5] # Get the first one xx[[1]] } } \keyword{datasets}