Package | Maintainer | Title |
---|---|---|
baySeq | Thomas J. Hardcastle | Empirical Bayesian analysis of patterns of differential expression in count data |
DESeq | Simon Anders | Digital gene expresion analysis based on the negative binomial distribution |
edgeR | Mark Robinson , Davis McCarthy , Gordon Smyth | Empirical analysis of digital gene expression data in R |
GEOquery | Sean Davis | Get data from NCBI Gene Expression Omnibus (GEO) |
sagenhaft | Tim Beissbarth | Collection of functions for reading and comparing SAGE libraries |