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###
### Running command:
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###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 quantiseqr
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* checking for file ‘quantiseqr/DESCRIPTION’ ... OK
* preparing ‘quantiseqr’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘using_quantiseqr.Rmd’ using rmarkdown
trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE107nnn/GSE107572/suppl//GSE107572_tpm_PBMC_RNAseq.txt.gz?tool=geoquery'
Content type 'application/x-gzip' length 753545 bytes (735 KB)
==================================================
downloaded 735 KB


Quitting from using_quantiseqr.Rmd:218-243 [ex2-comparison]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `open.connection()`:
! cannot open the connection
---
Backtrace:
     ▆
  1. └─GEOquery::getGEO(GEOid)
  2.   └─GEOquery:::getAndParseGSEMatrices(...)
  3.     └─GEOquery:::getDirListing(sprintf(gdsurl, stub, GEO))
  4.       ├─xml2::read_html(url)
  5.       └─xml2:::read_html.default(url)
  6.         ├─base::suppressWarnings(...)
  7.         │ └─base::withCallingHandlers(...)
  8.         ├─xml2::read_xml(x, encoding = encoding, ..., as_html = TRUE, options = options)
  9.         └─xml2:::read_xml.character(...)
 10.           └─xml2:::read_xml.connection(...)
 11.             ├─base::open(x, "rb")
 12.             └─base::open.connection(x, "rb")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'using_quantiseqr.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘using_quantiseqr.Rmd’

SUMMARY: processing the following file failed:
  ‘using_quantiseqr.Rmd’

Error: Vignette re-building failed.
Execution halted