app2gds                 Append a MethyLumiSet object to a preexisting
                        gds file
backup.gdsn             Copy gds node to a backup folder within gds
                        object
bigPepo                 tea.gds - description and validation for gds
                        objects
bigmelon-accessors      Bigmelon accessors
bigmelon-package        Write large-scale Illumina array datasets to
                        CoreArray Genomic Data Structure (GDS) data
                        files for efficient storage, access, and
                        modification.
bumphunterEngine.gdsn   Bumphunter using bigmelon
cantaloupe              Small MethyLumi 450k data sets for testing
chainsaw                Chainsaw - modify gds file by subsetting all
                        nodes
combo.gds               Combine two different gds objects together
dasen.gds               Bigmelon Quantile Normalization methods.
dasenrank               Dasen Quantile Normalization by storing ranks
dim.gds.class           dim.gds.class S3 method returning dimensions of
                        data represented by a gds file handle.
es2gds                  Coersion method for MethyLumiSet, RGChannelSet
                        or MethylSet to CoreArray Genomic Data
                        Structure (GDS) data file
estimateCellCounts.gds
                        Cell Proportion Estimation using bigmelon
finalreport2gds         Read finalreport files and convert to genomic
                        data structure files
gds2mlumi               Convert Genomic Data Structure file to
                        Methylumiset or Methylset object.
geotogds                Download data from GEO and convert it into a
                        gdsfmt object
getquantilesandranks    Compute the quantiles and ranks for a given
                        gdsn.node
iadd                    Add data from Illumina IDAT files to a gds
                        file.
pfilter.gds             Basic data filtering for Illumina methylation
                        data in gds objects
prcomp.gds.class        Principal Component Analysis for
                        high-dimensional data
pwod.gdsn               Probe-Wise Outlier Detection for DNA
                        methylation data.
redirect.gds            Change the location of the paths for row and
                        column names in a gds file.
wm-port                 Functions imported from wateRmelon
