Package: TOP
Title: TOP Constructs Transferable Model Across Gene Expression
        Platforms
Version: 1.9.0
Date: 2022-11-09
Authors@R: 
    c(
        person(
            given="Harry", family="Robertson",
            email = "harry.robertson@sydney.edu.au", role = c("aut", "cre"),
            comment = c(ORCID = "0000-0001-9203-3894")
        ),
        person(
            given="Nicholas", family= "Robertson",
            email = "nicholas.robertson@sydney.edu.au", role = c("aut")
        )
    )
Description: TOP constructs a transferable model across gene expression platforms for prospective experiments. Such a transferable model can be trained to make predictions on independent validation data with an accuracy that is similar to a re-substituted model. The TOP procedure also has the flexibility to be adapted to suit the most common clinical response variables, including linear response, binomial and Cox PH models.
License: GPL-3
URL: https://github.com/Harry25R/TOP
BugReports: https://github.com/Harry25R/TOP/issues
biocViews: Software, Survival, GeneExpression
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Imports: assertthat, caret, ClassifyR, directPA, doParallel, dplyr,
        ggnewscale, ggplot2, ggraph, ggrepel, ggthemes, glmnet, Hmisc,
        igraph, latex2exp, limma, magrittr, methods, plotly, pROC,
        purrr, reshape2, stats, stringr, survival, tibble, tidygraph,
        tidyr, statmod
Suggests: knitr, rmarkdown, BiocStyle, Biobase, curatedOvarianData,
        ggbeeswarm, ggsci, survminer, tidyverse
VignetteBuilder: knitr
LazyData: false
git_url: https://git.bioconductor.org/packages/TOP
git_branch: devel
git_last_commit: 237976c
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.22
Date/Publication: 2025-06-04
NeedsCompilation: no
Packaged: 2025-06-05 02:37:37 UTC; biocbuild
Author: Harry Robertson [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-9203-3894>),
  Nicholas Robertson [aut]
Maintainer: Harry Robertson <harry.robertson@sydney.edu.au>
Depends: R (>= 4.1.0)
Built: R 4.5.0; ; 2025-06-05 14:14:01 UTC; windows
