.DollarNames.FactorisedExperiment	dollar_names
.DollarNames.ModularExperiment	dollar_names
.DollarNames.ReducedExperiment	dollar_names
.FactorisedExperiment	factorised_experiment
.ModularExperiment	modular_experiment
.ReducedExperiment	reduced_experiment
assessSoftThreshold	assessSoftThreshold
assignments	module_assignments
assignments,ModularExperiment-method	module_assignments
assignments<-	module_assignments
assignments<-,ModularExperiment-method	module_assignments
associateComponents	associateComponents
calcEigengenes	calcEigengenes
calcEigengenes,ModularExperiment,data.frame-method	calcEigengenes
calcEigengenes,ModularExperiment,matrix-method	calcEigengenes
calcEigengenes,ModularExperiment,SummarizedExperiment-method	calcEigengenes
cbind,FactorisedExperiment-method	cbind_rbind
cbind,ModularExperiment-method	cbind_rbind
cbind,ReducedExperiment-method	cbind_rbind
cbind_rbind	cbind_rbind
colnames<-,ReducedExperiment-method	sample_names
componentNames	component_names
componentNames,ReducedExperiment-method	component_names
componentNames<-	component_names
componentNames<-,FactorisedExperiment-method	component_names
componentNames<-,ModularExperiment-method	component_names
componentNames<-,ReducedExperiment-method	component_names
dendrogram	module_dendrogram
dendrogram,ModularExperiment-method	module_dendrogram
dendrogram<-	module_dendrogram
dendrogram<-,ModularExperiment-method	module_dendrogram
dim,ReducedExperiment-method	dim-ReducedExperiment-method
dollar_names	dollar_names
estimateFactors	estimateFactors
estimateStability	estimateStability
FactorisedExperiment	factorised_experiment
FactorisedExperiment-class	factorised_experiment
featureNames	feature_names
featureNames,ReducedExperiment-method	feature_names
featureNames<-	feature_names
featureNames<-,FactorisedExperiment-method	feature_names
featureNames<-,ModularExperiment-method	feature_names
featureNames<-,ReducedExperiment-method	feature_names
getAlignedFeatures	getAlignedFeatures
getAlignedFeatures,FactorisedExperiment-method	getAlignedFeatures
getCentrality	getCentrality
getCentrality,ModularExperiment-method	getCentrality
getCommonFeatures	getCommonFeatures
getGeneIDs	get_gene_ids
getGeneIDs,ReducedExperiment-method	get_gene_ids
getMsigdbT2G	getMsigdbT2G
identifyModules	identifyModules
individual_dim	individual_dims
loadings	loadings
loadings,FactorisedExperiment-method	loadings
loadings,ModularExperiment-method	loadings
loadings<-	loadings
loadings<-,FactorisedExperiment-method	loadings
loadings<-,ModularExperiment-method	loadings
ModularExperiment	modular_experiment
ModularExperiment-class	modular_experiment
moduleNames	component_names
moduleNames,ModularExperiment-method	component_names
moduleNames<-	component_names
moduleNames<-,ModularExperiment-method	component_names
modulePreservation	modulePreservation
names<-,FactorisedExperiment-method	feature_names
names<-,ModularExperiment-method	feature_names
names<-,ReducedExperiment-method	feature_names
nComponents	individual_dims
nComponents,ReducedExperiment-method	individual_dims
nFeatures	individual_dims
nFeatures,ReducedExperiment-method	individual_dims
nModules	individual_dims
nModules,ModularExperiment-method	individual_dims
nSamples	individual_dims
nSamples,ReducedExperiment-method	individual_dims
plotCommonFeatures	plotCommonFeatures
plotDendro	plotDendro
plotDendro,ModularExperiment-method	plotDendro
plotModulePreservation	plotModulePreservation
plotStability	plotStability
predict,FactorisedExperiment-method	projectData
predict,ModularExperiment-method	calcEigengenes
projectData	projectData
projectData,FactorisedExperiment,data.frame-method	projectData
projectData,FactorisedExperiment,matrix-method	projectData
projectData,FactorisedExperiment,SummarizedExperiment-method	projectData
rbind,FactorisedExperiment-method	cbind_rbind
rbind,ModularExperiment-method	cbind_rbind
rbind,ReducedExperiment-method	cbind_rbind
reduced	reduced
reduced,ReducedExperiment-method	reduced
reduced<-	reduced
reduced<-,ReducedExperiment-method	reduced
ReducedExperiment	reduced_experiment
ReducedExperiment-class	reduced_experiment
rownames<-,FactorisedExperiment-method	feature_names
rownames<-,ModularExperiment-method	feature_names
ROWNAMES<-,ReducedExperiment-method	feature_names
rownames<-,ReducedExperiment-method	feature_names
runEnrich	enrichment
runEnrich,FactorisedExperiment-method	enrichment
runEnrich,ModularExperiment-method	enrichment
runICA	runICA
runWGCNA	runWGCNA
sampleNames	sample_names
sampleNames,ReducedExperiment-method	sample_names
sampleNames<-	sample_names
sampleNames<-,ReducedExperiment-method	sample_names
show	show
show,ReducedExperiment-method	show
slice	slice
stability	stability
stability,FactorisedExperiment-method	stability
stability<-	stability
stability<-,FactorisedExperiment-method	stability
[,FactorisedExperiment,ANY,ANY,ANY-method	slice
[,ModularExperiment,ANY,ANY,ANY-method	slice
[,ReducedExperiment,ANY,ANY,ANY-method	slice
[<-,FactorisedExperiment,ANY,ANY,FactorisedExperiment-method	slice
[<-,ModularExperiment,ANY,ANY,ModularExperiment-method	slice
[<-,ReducedExperiment,ANY,ANY,ReducedExperiment-method	slice
