analyse_individuals     Quick analysis and visualization of the
                        individuals/annotations/rows (e.g. Tss, gene)
                        from integrated Assay.
analyse_integrated_individuals
                        Quick analysis and visualization of the
                        individuals/annotations/rows (e.g. Tss, gene)
analyse_integrated_variables
                        Quick analysis and visualization of the
                        integrated Assays by integrate() function.
analyse_variables       Quick analysis and visualization of the
                        integrated Assays by integrate() function.
chart_correlation       Pairwise correlation, scatter plot and
                        histogram on selected groups.
cluster                 Cluster data points
cluster_boxplot         Comparison of clusters by boxplot
cluster_parameters      Detection of algorithm and number of clusters
create_group            Subsets an Assay dataframe into smaller groups
descriptor              Distribution of Assays as percentage of cell
                        lines
extract                 extraction of projected cooordinates from "PCA"
                        object.
extract_assay           Data extraction from "MultiAssayExperiment"
                        object
integrate_pca           Integration of multiple Assays into linear
                        combinations by PCA.
integrate_variables     Integration of an experiment/ Assay done on
                        many Cell lines/ time points into linear
                        combinations by PCA.
intersect               support function of prepareDataset
merge_cells             Storage of intersected factors from multiple
                        cell types as columns into a dataframe
plot_density            Visualization of Density of various groups on
                        Principal components
plot_density_3D         Visualization of 3D Density of various groups
                        on Principal components
plot_integrated_density
                        Visualization of Density of various groups on
                        Principal components of integrated assays
plot_integrated_density_3D
                        Visualization of 3D Density of various groups
                        on Principal components of multiple Assays
prepare_dataset         Intersects and merge data from multiple
                        experiments into a dataframe
