dsQTL

This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see dsQTL.

dsQTL, data excerpt from Degner et al. 2012 Nature letter


Bioconductor version: 3.7

dsQTL, excerpt from Degner et al. 2012 Nature letter on DNA variants associated with DnaseI hypersensitivity

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("dsQTL")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("dsQTL")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("dsQTL")
dsQTL, data excerpt from Degner et al. 2012 Nature letter PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews BiocViews, DNASeqData, ExperimentData, Genome, NCI, Project1000genomes, SequencingData
Version 0.18.0
License Artistic-2.0
Depends R (>= 2.15.0), utils, Biobase, SummarizedExperiment, GGBase(>= 3.31.1)
Imports
System Requirements
URL
See More
Suggests GGtools, rtracklayer
Linking To
Enhances
Depends On Me
Imports Me yriMulti
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package dsQTL_0.18.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/dsQTL
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/dsQTL
Package Short Url https://bioconductor.org/packages/dsQTL/
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