MutationalPatterns v0.99.6 (Release date: 2016-10-14)
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Changes:

* Renamed functions: 'mut_type_occurences' to 'mut_type_occurrences',
    'strand_occurences' to 'strand_occurrences'.

MutationalPatterns v0.99.5 (Release date: 2016-10-06)
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Changes:

* Added deprecation and defunct messages to functions that have
  changed since the v0.99.0.
* Various small vignette and reference manual updates.


MutationalPatterns v0.99.4 (Release date: 2016-10-05)
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Changes:

* Internal package loading changes.
* Removed files that do not belong to the package.

MutationalPatterns v0.99.3 (Release date: 2016-09-28)
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Changes:

* Renamed functions: 'get_mut_context' to 'mutation_context',
    'get_type_context' to 'type_context',
    'get_muts' to 'mutations_from_vcf',
    'get_strand' to 'strand_from_vcf'.
* Added an explanation for the difference between
    SomaticSignatures and MutationalPatterns in the vignette.


MutationalPatterns v0.99.2 (Release date: 2016-09-23)
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Changes:

* Renamed functions: 'vcf_to_granges' to 'read_vcfs_as_granges',
    'get_types' to 'mutation_types'.


MutationalPatterns v0.99.1 (Release date: 2016-09-13)
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Changes:

* Renamed functions: 'read_vcf' to 'vcf_to_granges'.
* Removed functions: 'bed_to_granges', 'estimate_rank', 'rename_chrom'.
* Parameter changes: 'plot_rainfall', 'vcf_to_granges'


MutationalPatterns v0.99.0 (Release date: 2016-09-12)
=====================================================

Changes:

* Package created