plotgardener
This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see plotgardener.
Coordinate-Based Genomic Visualization Package for R
Bioconductor version: 3.15
Coordinate-based genomic visualization package for R. It grants users the ability to programmatically produce complex, multi-paneled figures. Tailored for genomics, plotgardener allows users to visualize large complex genomic datasets and provides exquisite control over how plots are placed and arranged on a page.
Author: Nicole Kramer [aut, cre] , Eric S. Davis [aut]
, Craig Wenger [aut]
, Sarah Parker [ctb], Erika Deoudes [art], Michael Love [ctb], Douglas H. Phanstiel [aut, cph]
Maintainer: Nicole Kramer <nekramer at live.unc.edu>
citation("plotgardener")
):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("plotgardener")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("plotgardener")
Introduction to plotgardener | HTML | R Script |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | FunctionalGenomics, GenomeAnnotation, GenomeAssembly, HiC, Software, Visualization |
Version | 1.2.10 |
In Bioconductor since | BioC 3.14 (R-4.1) (2.5 years) |
License | MIT + file LICENSE |
Depends | R (>= 4.1.0) |
Imports | curl, data.table, dplyr, grDevices, grid, ggplotify, IRanges, methods, plyranges, purrr, Rcpp, RColorBrewer, rlang, stats, strawr, tools, utils |
System Requirements | |
URL | https://phanstiellab.github.io/plotgardener https://github.com/PhanstielLab/plotgardener |
Bug Reports | https://github.com/PhanstielLab/plotgardener/issues |
See More
Suggests | AnnotationDbi, AnnotationHub, BSgenome, BSgenome.Hsapiens.UCSC.hg19, ComplexHeatmap, GenomicFeatures, GenomeInfoDb, GenomicRanges, ggplot2, InteractionSet, knitr, org.Hs.eg.db, rtracklayer, plotgardenerData, png, rmarkdown, scales, showtext, testthat (>= 3.0.0), TxDb.Hsapiens.UCSC.hg19.knownGene |
Linking To | Rcpp |
Enhances | |
Depends On Me | |
Imports Me | Ularcirc |
Suggests Me | nullranges |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | plotgardener_1.2.10.tar.gz |
Windows Binary | plotgardener_1.2.10.zip (64-bit only) |
macOS Binary (x86_64) | plotgardener_1.2.10.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/plotgardener |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/plotgardener |
Bioc Package Browser | https://code.bioconductor.org/browse/plotgardener/ |
Package Short Url | https://bioconductor.org/packages/plotgardener/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.15 | Source Archive |